Wall clock time and date at job start Tue Mar 31 2020 06:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39693 * 120.00532 * 310.08244 * 3 2 1 5 5 C 1.37706 * 119.99457 * 180.02562 * 4 3 2 6 6 C 1.39664 * 120.00851 * 0.02562 * 5 4 3 7 7 C 1.47851 * 119.99847 * 179.97438 * 6 5 4 8 8 O 1.21555 * 119.99883 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99587 * 179.97438 * 7 6 5 10 10 C 1.38984 * 119.99530 * 175.53434 * 9 7 6 11 11 C 1.38690 * 120.29295 * 28.46076 * 10 9 7 12 12 C 1.38190 * 120.03413 * 180.02562 * 11 10 9 13 13 C 1.38881 * 120.62062 * 359.97438 * 12 11 10 14 14 C 1.36457 * 120.58855 * 0.02562 * 13 12 11 15 15 C 1.40742 * 119.94489 * 359.97438 * 14 13 12 16 16 C 1.41033 * 120.30480 * 180.02562 * 15 14 13 17 17 H 1.08000 * 119.99792 * 208.00805 * 16 15 14 18 18 C 1.39976 * 120.00172 * 28.00709 * 16 15 14 19 19 N 1.30845 * 119.99877 * 12.16754 * 18 16 15 20 20 Si 1.86801 * 120.00118 * 192.17086 * 18 16 15 21 21 H 1.48492 * 109.47200 * 89.99701 * 20 18 16 22 22 H 1.48502 * 109.46963 * 210.00042 * 20 18 16 23 23 H 1.48504 * 109.46940 * 330.00065 * 20 18 16 24 24 C 1.39662 * 120.00269 * 0.25186 * 6 5 4 25 25 C 1.37712 * 120.00263 * 359.48789 * 24 6 5 26 26 H 1.08001 * 119.99866 * 0.02562 * 4 3 2 27 27 H 1.08004 * 119.99915 * 179.97438 * 5 4 3 28 28 H 0.97000 * 120.00034 * 355.53335 * 9 7 6 29 29 H 1.08003 * 119.98238 * 0.02562 * 11 10 9 30 30 H 1.08005 * 119.69260 * 180.28277 * 12 11 10 31 31 H 1.08003 * 119.70869 * 179.97438 * 13 12 11 32 32 H 1.08002 * 120.02614 * 180.02562 * 14 13 12 33 33 H 0.96996 * 120.00056 * 180.02562 * 19 18 16 34 34 H 1.08002 * 119.99686 * 179.72817 * 24 6 5 35 35 H 1.08001 * 119.99994 * 180.23613 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2669 -0.7780 0.9256 5 6 4.6440 -0.7768 0.9257 6 6 5.3419 0.0032 0.0010 7 6 6.8204 0.0047 0.0017 8 8 7.4285 -0.6732 0.8068 9 7 7.4939 0.7570 -0.8911 10 6 8.8804 0.8314 -0.8314 11 6 9.6164 -0.2268 -0.3195 12 6 10.9948 -0.1470 -0.2622 13 6 11.6571 0.9869 -0.7143 14 6 10.9582 2.0428 -1.2229 15 6 9.5536 1.9875 -1.2926 16 6 8.8237 3.0742 -1.8173 17 1 7.8126 3.2566 -1.4844 18 6 9.4098 3.9164 -2.7694 19 7 10.5306 3.5692 -3.3485 20 14 8.5918 5.5361 -3.2133 21 1 9.0973 6.6076 -2.3181 22 1 8.9066 5.8795 -4.6234 23 1 7.1212 5.4087 -3.0513 24 6 4.6433 0.7861 -0.9207 25 6 3.2661 0.7811 -0.9246 26 1 2.7272 -1.3808 1.6410 27 1 5.1844 -1.3784 1.6416 28 1 7.0108 1.2465 -1.5752 29 1 9.1119 -1.1137 0.0347 30 1 11.5627 -0.9762 0.1333 31 1 12.7348 1.0337 -0.6623 32 1 11.4825 2.9200 -1.5723 33 1 10.9369 4.1530 -4.0080 34 1 5.1831 1.3926 -1.6329 35 1 2.7259 1.3836 -1.6398 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334367166.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:11:57 Heat of formation + Delta-G solvation = 29.465919 kcal Electronic energy + Delta-G solvation = -21241.055486 eV Core-core repulsion = 17975.227178 eV Total energy + Delta-G solvation = -3265.828308 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.57406 -40.07660 -38.80708 -37.45127 -35.59025 -35.48729 -32.79366 -32.14088 -31.46190 -30.09032 -27.19557 -25.97263 -23.80165 -23.35679 -22.52045 -21.25528 -19.99555 -19.32292 -18.81175 -17.87508 -17.02534 -16.42927 -16.12071 -15.97563 -15.83349 -15.51725 -15.10273 -14.78480 -14.69055 -14.56344 -14.29926 -14.08446 -13.89098 -13.57170 -13.24842 -13.22689 -13.02484 -12.83777 -12.67771 -12.12194 -12.08527 -11.96040 -11.52390 -11.06536 -11.02584 -10.49840 -10.09042 -10.06219 -9.28422 -8.80198 -8.47312 -6.28758 -0.67182 0.31829 0.88773 1.10052 1.46260 1.54536 1.55557 1.57553 1.59269 2.22610 2.24535 2.35362 2.73689 2.81281 2.90389 3.69345 3.76705 3.83762 3.88738 4.20649 4.37263 4.55540 4.62390 4.66883 4.80539 4.96486 5.06826 5.10753 5.19187 5.24653 5.29156 5.36533 5.47179 5.66704 5.81454 5.87664 6.14828 6.22508 6.28402 6.37112 6.67423 6.74283 6.97295 7.02948 7.34752 8.39421 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.014887 B = 0.004485 C = 0.003492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.381644 B = 6241.549016 C = 8015.411930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C 0.281 3.719 3 C -0.010 4.010 4 C -0.063 4.063 5 C -0.067 4.067 6 C -0.107 4.107 7 C 0.533 3.467 8 O -0.566 6.566 9 N -0.625 5.625 10 C 0.008 3.992 11 C -0.109 4.109 12 C -0.229 4.229 13 C -0.120 4.120 14 C -0.173 4.173 15 C 0.074 3.926 16 C -0.488 4.488 17 H 0.088 0.912 18 C 0.038 3.962 19 N -0.827 5.827 20 Si 0.980 3.020 21 H -0.271 1.271 22 H -0.275 1.275 23 H -0.247 1.247 24 C -0.088 4.088 25 C -0.062 4.062 26 H 0.165 0.835 27 H 0.145 0.855 28 H 0.414 0.586 29 H 0.121 0.879 30 H 0.113 0.887 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.287 0.713 34 H 0.149 0.851 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.406 -2.330 1.865 11.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.130 5.130 2 C -0.033 4.033 3 C -0.014 4.014 4 C -0.083 4.083 5 C -0.086 4.086 6 C -0.111 4.111 7 C 0.323 3.677 8 O -0.447 6.447 9 N -0.267 5.267 10 C -0.087 4.087 11 C -0.129 4.129 12 C -0.249 4.249 13 C -0.139 4.139 14 C -0.193 4.193 15 C 0.071 3.929 16 C -0.517 4.517 17 H 0.106 0.894 18 C -0.177 4.177 19 N -0.453 5.453 20 Si 0.801 3.199 21 H -0.196 1.196 22 H -0.200 1.200 23 H -0.170 1.170 24 C -0.106 4.106 25 C -0.083 4.083 26 H 0.183 0.817 27 H 0.163 0.837 28 H 0.252 0.748 29 H 0.139 0.861 30 H 0.131 0.869 31 H 0.128 0.872 32 H 0.126 0.874 33 H 0.097 0.903 34 H 0.167 0.833 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.621 -2.714 2.227 13.100 hybrid contribution 0.624 0.879 -0.604 1.236 sum -11.997 -1.835 1.622 12.244 Atomic orbital electron populations 1.81303 1.13179 1.09384 1.09127 1.25687 0.92473 0.92586 0.92594 1.16179 0.83585 1.01711 0.99903 1.21309 0.92909 0.96913 0.97157 1.21249 0.93836 0.96628 0.96908 1.20124 0.90993 1.00568 0.99378 1.18891 0.88395 0.80047 0.80371 1.90666 1.70142 1.43097 1.40787 1.42779 1.05390 1.47054 1.31486 1.17883 0.82488 0.95275 1.13024 1.21091 0.94038 0.97530 1.00277 1.20658 0.93905 0.99718 1.10631 1.20737 0.98870 0.94606 0.99687 1.20983 0.94419 0.99279 1.04588 1.17739 0.92752 0.90685 0.91766 1.19601 1.01508 1.09813 1.20821 0.89425 1.26700 0.94945 1.01919 0.94126 1.69870 1.17813 1.37024 1.20594 0.85217 0.80151 0.76836 0.77676 1.19629 1.19956 1.16976 1.21454 0.94507 0.97228 0.97430 1.21318 0.93132 0.96704 0.97103 0.81740 0.83730 0.74777 0.86084 0.86867 0.87249 0.87365 0.90258 0.83316 0.81722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -10.41 18.54 19.00 0.35 -10.06 16 2 C 0.28 5.02 15.32 88.33 1.35 6.37 16 3 C -0.01 -0.15 5.73 -21.33 -0.12 -0.27 16 4 C -0.06 -0.90 9.73 22.50 0.22 -0.69 16 5 C -0.07 -1.34 9.58 22.49 0.22 -1.13 16 6 C -0.11 -2.61 5.88 -20.04 -0.12 -2.73 16 7 C 0.53 18.62 7.64 86.79 0.66 19.29 16 8 O -0.57 -23.42 13.38 -3.89 -0.05 -23.47 16 9 N -0.62 -23.67 4.97 -304.87 -1.52 -25.19 16 10 C 0.01 0.38 6.44 38.92 0.25 0.63 16 11 C -0.11 -5.13 8.75 22.37 0.20 -4.94 16 12 C -0.23 -10.40 10.04 22.41 0.22 -10.17 16 13 C -0.12 -5.60 9.96 22.01 0.22 -5.38 16 14 C -0.17 -8.80 8.61 22.47 0.19 -8.60 16 15 C 0.07 3.74 5.57 -21.18 -0.12 3.62 16 16 C -0.49 -23.11 8.35 23.38 0.20 -22.92 16 17 H 0.09 3.78 7.27 -2.91 -0.02 3.76 16 18 C 0.04 1.73 5.23 85.26 0.45 2.18 16 19 N -0.83 -40.21 10.86 21.83 0.24 -39.98 16 20 Si 0.98 34.23 29.58 68.60 2.03 36.26 16 21 H -0.27 -9.56 7.11 99.48 0.71 -8.85 16 22 H -0.27 -9.39 7.11 99.48 0.71 -8.68 16 23 H -0.25 -7.92 7.11 99.48 0.71 -7.21 16 24 C -0.09 -1.63 9.52 22.49 0.21 -1.42 16 25 C -0.06 -0.89 9.73 22.50 0.22 -0.67 16 26 H 0.17 1.51 8.06 -2.91 -0.02 1.48 16 27 H 0.14 2.97 7.64 -2.91 -0.02 2.95 16 28 H 0.41 13.57 5.75 -92.71 -0.53 13.04 16 29 H 0.12 5.61 5.71 -2.91 -0.02 5.60 16 30 H 0.11 4.49 8.06 -2.91 -0.02 4.47 16 31 H 0.11 4.47 8.06 -2.91 -0.02 4.45 16 32 H 0.11 5.72 6.21 -2.91 -0.02 5.70 16 33 H 0.29 12.72 8.30 -92.71 -0.77 11.95 16 34 H 0.15 2.52 6.40 -2.91 -0.02 2.50 16 35 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -62.52 314.24 5.93 -56.60 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 0.63 Total: 32.65 kcal Atomic # 6 Polarization: -31.06 SS G_CDS: 4.25 Total: -26.81 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -0.93 Total: -75.23 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.05 Total: -23.47 kcal Atomic # 14 Polarization: 34.23 SS G_CDS: 2.03 Total: 36.26 kcal Total: -62.52 5.93 -56.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334367166.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.061 kcal (2) G-P(sol) polarization free energy of solvation -62.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.596 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds