Wall clock time and date at job start Tue Mar 31 2020 06:15:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86800 * 120.00010 * 2 1 4 4 H 1.48500 * 109.47313 * 85.01692 * 3 2 1 5 5 H 1.48505 * 109.46922 * 205.01802 * 3 2 1 6 6 H 1.48498 * 109.47091 * 325.01363 * 3 2 1 7 7 C 1.39929 * 119.99688 * 180.26749 * 2 1 3 8 8 H 1.08001 * 119.99710 * 197.49016 * 7 2 1 9 9 C 1.41407 * 120.00144 * 17.49590 * 7 2 1 10 10 C 1.40777 * 120.21228 * 24.36402 * 9 7 2 11 11 C 1.37633 * 119.88602 * 180.02562 * 10 9 7 12 12 C 1.38533 * 120.31978 * 359.97438 * 11 10 9 13 13 C 1.39239 * 120.43381 * 359.97438 * 12 11 10 14 14 N 1.39959 * 119.95016 * 180.02562 * 13 12 11 15 15 C 1.34773 * 120.00067 * 212.11830 * 14 13 12 16 16 O 1.21591 * 119.99797 * 5.47913 * 15 14 13 17 17 N 1.34770 * 120.00129 * 185.47981 * 15 14 13 18 18 C 1.46503 * 120.00343 * 180.02562 * 17 15 14 19 19 H 1.09003 * 108.84853 * 327.87832 * 18 17 15 20 20 C 1.52932 * 108.89052 * 209.43379 * 18 17 15 21 21 C 1.55152 * 108.96406 * 209.10279 * 20 18 17 22 22 S 1.83988 * 100.90844 * 41.43825 * 21 20 18 23 23 C 1.53710 * 108.88929 * 86.44899 * 18 17 15 24 24 C 1.38280 * 120.10058 * 359.72675 * 13 12 11 25 25 H 0.96999 * 120.00342 * 0.02562 * 1 2 3 26 26 H 1.07996 * 120.05178 * 359.97438 * 10 9 7 27 27 H 1.08000 * 119.84350 * 180.02562 * 11 10 9 28 28 H 1.08010 * 119.78446 * 179.97438 * 12 11 10 29 29 H 0.96994 * 119.99519 * 32.11639 * 14 13 12 30 30 H 0.97001 * 120.00439 * 359.97438 * 17 15 14 31 31 H 1.09005 * 109.60781 * 329.03727 * 20 18 17 32 32 H 1.09009 * 109.60458 * 89.17370 * 20 18 17 33 33 H 1.08995 * 111.13138 * 283.52815 * 21 20 18 34 34 H 1.08998 * 111.13447 * 159.34814 * 21 20 18 35 35 H 1.08998 * 110.34421 * 242.49783 * 23 18 17 36 36 H 1.09004 * 110.33787 * 4.64779 * 23 18 17 37 37 H 1.08001 * 120.15820 * 180.30031 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 2.3845 2.1073 1.3948 5 1 3.5886 1.4120 -0.5921 6 1 1.4964 2.6199 -0.8028 7 6 2.0079 -1.2118 -0.0057 8 1 3.0504 -1.2348 0.2753 9 6 1.3499 -2.4064 -0.3794 10 6 0.2134 -2.3594 -1.2089 11 6 -0.4222 -3.5262 -1.5681 12 6 0.0513 -4.7477 -1.1177 13 6 1.1749 -4.8097 -0.2976 14 7 1.6449 -6.0493 0.1511 15 6 2.2371 -6.1489 1.3576 16 8 2.2745 -5.1850 2.0979 17 7 2.7880 -7.3167 1.7436 18 6 3.4313 -7.4252 3.0553 19 1 3.8732 -6.4622 3.3115 20 6 4.5437 -8.4717 2.9763 21 6 4.7213 -9.1252 4.3722 22 16 2.9668 -9.3226 4.8900 23 6 2.3652 -7.7783 4.1048 24 6 1.8307 -3.6489 0.0691 25 1 -0.4850 0.8400 -0.0004 26 1 -0.1595 -1.4094 -1.5620 27 1 -1.2938 -3.4894 -2.2048 28 1 -0.4544 -5.6580 -1.4046 29 1 1.5443 -6.8367 -0.4063 30 1 2.7579 -8.0858 1.1532 31 1 4.2759 -9.2357 2.2463 32 1 5.4756 -7.9930 2.6754 33 1 5.2590 -8.4628 5.0506 34 1 5.2188 -10.0918 4.2933 35 1 2.2847 -6.9829 4.8457 36 1 1.4014 -7.9463 3.6241 37 1 2.7052 -3.6963 0.7012 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334730817.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:28 Heat of formation + Delta-G solvation = -27.289009 kcal Electronic energy + Delta-G solvation = -20404.142204 eV Core-core repulsion = 17271.296769 eV Total energy + Delta-G solvation = -3132.845435 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.56435 -39.36281 -37.74380 -36.14020 -34.91446 -33.62222 -31.73826 -30.44468 -29.38806 -27.24736 -25.93958 -23.51227 -22.73865 -21.78809 -21.66774 -19.63904 -19.28636 -17.83880 -17.44759 -17.34589 -16.63418 -16.41502 -16.28340 -15.66152 -15.48012 -14.99688 -14.78529 -14.68647 -14.06471 -13.77140 -13.59809 -13.25845 -13.17476 -13.07465 -12.91315 -12.80278 -12.57597 -12.21186 -12.03610 -11.89465 -11.57077 -11.32577 -11.14577 -11.01666 -10.69282 -10.24190 -9.37804 -8.78256 -8.67673 -8.60079 -6.35233 0.77046 0.94184 1.04333 1.28467 1.36433 1.47746 1.53540 1.65571 2.15282 2.22064 2.75063 3.23407 3.44979 3.74187 3.77523 3.92857 3.98365 4.19415 4.46254 4.49358 4.63076 4.65939 4.74896 4.91992 4.95985 5.06579 5.12426 5.14593 5.19593 5.33638 5.41259 5.71759 5.83835 6.07227 6.12878 6.18453 6.38008 6.70299 6.95660 7.02545 7.08349 7.57638 8.34191 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.022756 B = 0.003414 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.167024 B = 8200.599278 C = 8946.490691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.036 3.964 3 Si 0.983 3.017 4 H -0.265 1.265 5 H -0.259 1.259 6 H -0.259 1.259 7 C -0.502 4.502 8 H 0.065 0.935 9 C 0.090 3.910 10 C -0.203 4.203 11 C -0.090 4.090 12 C -0.255 4.255 13 C 0.178 3.822 14 N -0.667 5.667 15 C 0.694 3.306 16 O -0.614 6.614 17 N -0.718 5.718 18 C 0.158 3.842 19 H 0.077 0.923 20 C -0.122 4.122 21 C -0.051 4.051 22 S -0.329 6.329 23 C -0.073 4.073 24 C -0.240 4.240 25 H 0.289 0.711 26 H 0.104 0.896 27 H 0.122 0.878 28 H 0.131 0.869 29 H 0.419 0.581 30 H 0.415 0.585 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.094 0.906 37 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.705 -17.235 2.454 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.190 1.190 5 H -0.183 1.183 6 H -0.183 1.183 7 C -0.532 4.532 8 H 0.084 0.916 9 C 0.087 3.913 10 C -0.223 4.223 11 C -0.108 4.108 12 C -0.276 4.276 13 C 0.084 3.916 14 N -0.316 5.316 15 C 0.395 3.605 16 O -0.493 6.493 17 N -0.375 5.375 18 C 0.051 3.949 19 H 0.095 0.905 20 C -0.161 4.161 21 C -0.199 4.199 22 S -0.104 6.104 23 C -0.223 4.223 24 C -0.262 4.262 25 H 0.099 0.901 26 H 0.122 0.878 27 H 0.140 0.860 28 H 0.149 0.851 29 H 0.257 0.743 30 H 0.253 0.747 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.121 0.879 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 7.002 -17.130 3.799 18.892 hybrid contribution 0.420 1.249 -0.791 1.537 sum 7.422 -15.881 3.008 17.786 Atomic orbital electron populations 1.69882 1.08923 1.30522 1.35673 1.26749 0.95558 1.04431 0.91170 0.85200 0.79250 0.75939 0.79321 1.19020 1.18299 1.18332 1.19770 0.97944 0.92908 1.42546 0.91645 1.17827 0.92041 0.92397 0.89003 1.21314 1.00421 0.97617 1.02950 1.20814 0.98737 0.92145 0.99144 1.20411 0.99328 0.97977 1.09875 1.17274 0.93836 0.83738 0.96783 1.42318 1.61244 1.10101 1.17906 1.16214 0.78782 0.83862 0.81669 1.90988 1.64501 1.38905 1.54923 1.45042 1.61152 1.11643 1.19697 1.21427 0.91212 1.01365 0.80910 0.90503 1.22562 0.98112 0.97641 0.97789 1.24431 0.91822 1.06139 0.97522 1.88006 1.13533 1.33108 1.75787 1.24394 1.02063 0.95944 0.99894 1.20921 1.04435 0.92418 1.08394 0.90073 0.87817 0.85965 0.85076 0.74322 0.74670 0.87759 0.87493 0.87923 0.84593 0.89998 0.88795 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -45.13 10.92 21.82 0.24 -44.90 16 2 C 0.04 1.90 5.15 85.25 0.44 2.34 16 3 Si 0.98 40.29 29.59 68.60 2.03 42.32 16 4 H -0.27 -10.56 7.11 99.48 0.71 -9.86 16 5 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 6 H -0.26 -9.85 7.11 99.48 0.71 -9.15 16 7 C -0.50 -29.36 9.05 23.46 0.21 -29.15 16 8 H 0.07 3.79 7.91 -2.91 -0.02 3.76 16 9 C 0.09 5.23 5.57 -21.31 -0.12 5.11 16 10 C -0.20 -11.03 8.70 22.75 0.20 -10.83 16 11 C -0.09 -4.11 10.02 22.20 0.22 -3.89 16 12 C -0.25 -10.65 9.96 22.58 0.22 -10.43 16 13 C 0.18 7.97 6.29 38.09 0.24 8.21 16 14 N -0.67 -22.39 5.35 -317.33 -1.70 -24.09 16 15 C 0.69 24.19 8.27 179.06 1.48 25.67 16 16 O -0.61 -28.84 13.56 -4.00 -0.05 -28.89 16 17 N -0.72 -16.01 4.86 -456.77 -2.22 -18.23 16 18 C 0.16 3.31 2.98 45.21 0.13 3.44 16 19 H 0.08 2.05 7.45 -2.39 -0.02 2.03 16 20 C -0.12 -1.44 5.98 31.31 0.19 -1.26 16 21 C -0.05 -0.58 7.52 72.72 0.55 -0.04 16 22 S -0.33 -6.50 23.23 -56.49 -1.31 -7.81 16 23 C -0.07 -1.69 7.11 72.22 0.51 -1.18 16 24 C -0.24 -13.00 8.40 22.85 0.19 -12.81 16 25 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 26 H 0.10 5.84 6.13 -2.91 -0.02 5.82 16 27 H 0.12 4.76 8.06 -2.91 -0.02 4.74 16 28 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 29 H 0.42 9.74 8.83 -92.71 -0.82 8.92 16 30 H 0.42 5.93 8.37 -92.71 -0.78 5.16 16 31 H 0.10 0.89 7.72 -2.38 -0.02 0.88 16 32 H 0.11 1.04 8.14 -2.38 -0.02 1.02 16 33 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.14 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 36 H 0.09 2.34 7.89 -2.38 -0.02 2.32 16 37 H 0.09 4.98 6.34 -2.91 -0.02 4.96 16 Total: -1.00 -74.73 321.45 0.98 -73.75 By element: Atomic # 1 Polarization: 33.14 SS G_CDS: -0.48 Total: 32.65 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: 4.47 Total: -24.81 kcal Atomic # 7 Polarization: -83.54 SS G_CDS: -3.68 Total: -87.22 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.05 Total: -28.89 kcal Atomic # 14 Polarization: 40.29 SS G_CDS: 2.03 Total: 42.32 kcal Atomic # 16 Polarization: -6.50 SS G_CDS: -1.31 Total: -7.81 kcal Total: -74.73 0.98 -73.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334730817.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.459 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds