Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48495 * 109.47016 * 274.98959 * 3 2 1 5 5 H 1.48500 * 109.46839 * 34.98631 * 3 2 1 6 6 H 1.48495 * 109.46950 * 154.98450 * 3 2 1 7 7 C 1.39932 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 151.98996 * 7 2 1 9 9 C 1.41402 * 119.99933 * 331.98697 * 7 2 1 10 10 C 1.40779 * 120.21488 * 337.90386 * 9 7 2 11 11 C 1.37634 * 119.88765 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.32222 * 359.71902 * 11 10 9 13 13 C 1.39248 * 120.42704 * 0.55454 * 12 11 10 14 14 N 1.39950 * 119.94568 * 179.72309 * 13 12 11 15 15 C 1.34780 * 119.99853 * 140.87208 * 14 13 12 16 16 O 1.21579 * 120.00120 * 354.42015 * 15 14 13 17 17 N 1.34783 * 119.99682 * 174.68906 * 15 14 13 18 18 C 1.46499 * 119.99619 * 180.02562 * 17 15 14 19 19 H 1.08998 * 108.83197 * 34.30438 * 18 17 15 20 20 C 1.52331 * 108.86869 * 152.83056 * 18 17 15 21 21 C 1.54253 * 112.59075 * 120.81659 * 20 18 17 22 22 S 1.83957 * 102.58026 * 24.53214 * 21 20 18 23 23 C 1.54256 * 108.87041 * 275.76844 * 18 17 15 24 24 C 1.38279 * 120.10234 * 359.44881 * 13 12 11 25 25 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.05274 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.84357 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.78585 * 180.30532 * 12 11 10 29 29 H 0.96996 * 120.00118 * 320.86990 * 14 13 12 30 30 H 0.96998 * 120.00037 * 0.02562 * 17 15 14 31 31 H 1.08998 * 108.87540 * 241.63997 * 20 18 17 32 32 H 1.09011 * 108.86936 * 359.97438 * 20 18 17 33 33 H 1.09000 * 110.79063 * 142.80636 * 21 20 18 34 34 H 1.08998 * 110.78998 * 266.25856 * 21 20 18 35 35 H 1.09004 * 110.78393 * 332.92733 * 23 18 17 36 36 H 1.09000 * 110.78415 * 96.37963 * 23 18 17 37 37 H 1.07997 * 120.15558 * 180.24708 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3844 2.1073 -1.3947 5 1 1.4965 2.6199 0.8028 6 1 3.5886 1.4120 0.5920 7 6 2.0079 -1.2119 -0.0005 8 1 2.9930 -1.2665 -0.4398 9 6 1.4250 -2.3649 0.5741 10 6 0.4002 -2.2388 1.5310 11 6 -0.1627 -3.3657 2.0856 12 6 0.2702 -4.6247 1.7026 13 6 1.2868 -4.7648 0.7614 14 7 1.7203 -6.0415 0.3861 15 6 2.0292 -6.2970 -0.9007 16 8 1.8355 -5.4508 -1.7520 17 7 2.5479 -7.4925 -1.2446 18 6 2.8842 -7.7701 -2.6432 19 1 3.2353 -6.8498 -3.1099 20 6 4.0040 -8.8019 -2.6852 21 6 3.6042 -10.0794 -3.4517 22 16 2.2770 -9.4750 -4.5731 23 6 1.6140 -8.2482 -3.3763 24 6 1.8648 -3.6446 0.1929 25 1 -0.4850 0.8401 0.0004 26 1 0.0563 -1.2594 1.8294 27 1 -0.9492 -3.2681 2.8194 28 1 -0.1810 -5.5032 2.1398 29 1 1.7985 -6.7424 1.0520 30 1 2.6985 -8.1691 -0.5661 31 1 4.8742 -8.3584 -3.1690 32 1 4.2724 -9.0727 -1.6639 33 1 4.4471 -10.4672 -4.0238 34 1 3.2184 -10.8359 -2.7684 35 1 0.9208 -8.7213 -2.6807 36 1 1.1345 -7.4206 -3.8991 37 1 2.6506 -3.7523 -0.5400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334730820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -7.325314 kcal Electronic energy + Delta-G solvation = -20387.247910 eV Core-core repulsion = 17255.268166 eV Total energy + Delta-G solvation = -3131.979745 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.09245 -37.76212 -36.47403 -34.38499 -33.20952 -32.45038 -29.83881 -29.42390 -27.81458 -25.34861 -25.15495 -22.05165 -20.89364 -20.60687 -20.10551 -18.18528 -17.67425 -16.94359 -15.99630 -15.60792 -15.12122 -15.05531 -14.70538 -14.39412 -14.10870 -13.98010 -13.43026 -13.09211 -12.87464 -12.39662 -12.23724 -12.10796 -11.88080 -11.66692 -11.40135 -11.24156 -11.05672 -10.69163 -10.51317 -10.35360 -10.11909 -9.74780 -9.58865 -9.24676 -9.03981 -8.81585 -7.95225 -7.47629 -6.90838 -6.82457 -4.28897 1.60640 2.02522 2.72485 2.86020 3.03896 3.09489 3.12967 3.24696 3.65110 3.95645 4.22988 4.44206 4.50282 4.58908 4.60502 4.83665 4.98945 5.23398 5.27254 5.50835 5.69765 5.72604 5.80647 6.25427 6.43075 6.47625 6.77781 6.79723 7.04811 7.06908 7.19845 7.34307 7.67914 7.84196 7.99744 8.08702 8.24504 8.41280 8.64259 8.89120 8.97595 9.04392 10.14862 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.296774 B = 8325.064244 C = 8973.428810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.084 3.916 3 Si 0.900 3.100 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.259 1.259 7 C -0.463 4.463 8 H 0.079 0.921 9 C 0.124 3.876 10 C -0.184 4.184 11 C -0.086 4.086 12 C -0.269 4.269 13 C 0.173 3.827 14 N -0.682 5.682 15 C 0.696 3.304 16 O -0.560 6.560 17 N -0.748 5.748 18 C 0.163 3.837 19 H 0.105 0.895 20 C -0.133 4.133 21 C -0.066 4.066 22 S -0.297 6.297 23 C -0.073 4.073 24 C -0.212 4.212 25 H 0.282 0.718 26 H 0.109 0.891 27 H 0.091 0.909 28 H 0.087 0.913 29 H 0.393 0.607 30 H 0.392 0.608 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.113 0.887 37 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.069 -16.045 -1.348 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.400 5.400 2 C -0.136 4.136 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.182 1.182 7 C -0.492 4.492 8 H 0.097 0.903 9 C 0.120 3.880 10 C -0.203 4.203 11 C -0.105 4.105 12 C -0.290 4.290 13 C 0.081 3.919 14 N -0.329 5.329 15 C 0.397 3.603 16 O -0.435 6.435 17 N -0.406 5.406 18 C 0.055 3.945 19 H 0.123 0.877 20 C -0.173 4.173 21 C -0.215 4.215 22 S -0.072 6.072 23 C -0.222 4.222 24 C -0.233 4.233 25 H 0.092 0.908 26 H 0.127 0.873 27 H 0.109 0.891 28 H 0.106 0.894 29 H 0.227 0.773 30 H 0.227 0.773 31 H 0.107 0.893 32 H 0.102 0.898 33 H 0.125 0.875 34 H 0.108 0.892 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 5.374 -15.410 -3.335 16.658 hybrid contribution 0.562 0.315 1.727 1.844 sum 5.936 -15.095 -1.607 16.300 Atomic orbital electron populations 1.69916 1.07914 1.29541 1.32596 1.25910 0.94451 1.01372 0.91860 0.86450 0.81221 0.80868 0.79136 1.19521 1.19962 1.18238 1.19515 1.02941 0.92789 1.33912 0.90270 1.17417 0.90034 0.91372 0.89133 1.21136 1.01979 0.96980 1.00252 1.20400 0.98540 0.92562 0.99035 1.19988 1.03758 0.96400 1.08882 1.17184 0.95365 0.81708 0.97660 1.42586 1.69924 1.13099 1.07270 1.16027 0.78701 0.82246 0.83364 1.91014 1.57914 1.45811 1.48715 1.45459 1.70219 1.15988 1.08914 1.21394 0.91739 1.00016 0.81373 0.87729 1.22248 0.99035 0.93878 1.02100 1.24112 0.98954 0.99449 0.98939 1.88100 1.42074 1.50246 1.26761 1.24738 1.00251 0.99167 0.98086 1.20798 1.06043 0.91025 1.05464 0.90756 0.87288 0.89125 0.89432 0.77308 0.77347 0.89274 0.89800 0.87496 0.89174 0.88881 0.86879 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.48 11.47 55.55 0.64 -19.84 16 2 C 0.08 2.17 4.90 -17.35 -0.09 2.08 16 3 Si 0.90 18.85 29.64 -169.99 -5.04 13.81 16 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 5 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 6 H -0.26 -5.38 7.11 56.52 0.40 -4.98 16 7 C -0.46 -12.74 8.99 -37.74 -0.34 -13.08 16 8 H 0.08 2.12 7.98 -52.48 -0.42 1.71 16 9 C 0.12 3.41 5.57 -106.85 -0.60 2.81 16 10 C -0.18 -4.83 8.75 -38.84 -0.34 -5.17 16 11 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 12 C -0.27 -5.95 9.97 -39.10 -0.39 -6.34 16 13 C 0.17 3.92 6.16 -83.76 -0.52 3.40 16 14 N -0.68 -11.94 5.33 -14.27 -0.08 -12.02 16 15 C 0.70 12.29 8.21 -86.91 -0.71 11.58 16 16 O -0.56 -12.82 14.06 5.30 0.07 -12.75 16 17 N -0.75 -8.85 4.93 -58.37 -0.29 -9.13 16 18 C 0.16 1.81 2.93 -67.62 -0.20 1.61 16 19 H 0.10 1.43 7.52 -51.93 -0.39 1.04 16 20 C -0.13 -1.00 6.09 -26.42 -0.16 -1.17 16 21 C -0.07 -0.47 7.46 37.81 0.28 -0.19 16 22 S -0.30 -3.24 23.26 -107.50 -2.50 -5.74 16 23 C -0.07 -0.85 7.04 37.81 0.27 -0.58 16 24 C -0.21 -5.51 8.39 -38.68 -0.32 -5.83 16 25 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 26 H 0.11 2.92 6.37 -52.48 -0.33 2.58 16 27 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 28 H 0.09 1.68 8.06 -52.48 -0.42 1.26 16 29 H 0.39 5.17 8.84 -40.82 -0.36 4.81 16 30 H 0.39 3.26 8.24 -40.82 -0.34 2.92 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.08 0.50 7.44 -51.92 -0.39 0.11 16 33 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.09 1.05 8.05 -51.93 -0.42 0.63 16 36 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.10 2.71 6.83 -52.49 -0.36 2.35 16 LS Contribution 322.76 15.07 4.86 4.86 Total: -1.00 -32.10 322.76 -10.51 -42.61 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -4.68 Total: 11.50 kcal Atomic # 6 Polarization: -9.79 SS G_CDS: -3.51 Total: -13.30 kcal Atomic # 7 Polarization: -41.27 SS G_CDS: 0.27 Total: -41.00 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: 0.07 Total: -12.75 kcal Atomic # 14 Polarization: 18.85 SS G_CDS: -5.04 Total: 13.81 kcal Atomic # 16 Polarization: -3.24 SS G_CDS: -2.50 Total: -5.74 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.10 -10.51 -42.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334730820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.285 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds