Wall clock time and date at job start Tue Mar 31 2020 06:15:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30827 * 1 3 3 Si 1.86804 * 120.00248 * 2 1 4 4 H 1.48495 * 109.47016 * 274.98959 * 3 2 1 5 5 H 1.48500 * 109.46839 * 34.98631 * 3 2 1 6 6 H 1.48495 * 109.46950 * 154.98450 * 3 2 1 7 7 C 1.39932 * 119.99706 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00048 * 151.98996 * 7 2 1 9 9 C 1.41402 * 119.99933 * 331.98697 * 7 2 1 10 10 C 1.40779 * 120.21488 * 337.90386 * 9 7 2 11 11 C 1.37634 * 119.88765 * 179.97438 * 10 9 7 12 12 C 1.38537 * 120.32222 * 359.71902 * 11 10 9 13 13 C 1.39248 * 120.42704 * 0.55454 * 12 11 10 14 14 N 1.39950 * 119.94568 * 179.72309 * 13 12 11 15 15 C 1.34780 * 119.99853 * 140.87208 * 14 13 12 16 16 O 1.21579 * 120.00120 * 354.42015 * 15 14 13 17 17 N 1.34783 * 119.99682 * 174.68906 * 15 14 13 18 18 C 1.46499 * 119.99619 * 180.02562 * 17 15 14 19 19 H 1.08998 * 108.83197 * 34.30438 * 18 17 15 20 20 C 1.52331 * 108.86869 * 152.83056 * 18 17 15 21 21 C 1.54253 * 112.59075 * 120.81659 * 20 18 17 22 22 S 1.83957 * 102.58026 * 24.53214 * 21 20 18 23 23 C 1.54256 * 108.87041 * 275.76844 * 18 17 15 24 24 C 1.38279 * 120.10234 * 359.44881 * 13 12 11 25 25 H 0.97001 * 119.99911 * 359.97438 * 1 2 3 26 26 H 1.08007 * 120.05274 * 359.97438 * 10 9 7 27 27 H 1.08001 * 119.84357 * 180.02562 * 11 10 9 28 28 H 1.08003 * 119.78585 * 180.30532 * 12 11 10 29 29 H 0.96996 * 120.00118 * 320.86990 * 14 13 12 30 30 H 0.96998 * 120.00037 * 0.02562 * 17 15 14 31 31 H 1.08998 * 108.87540 * 241.63997 * 20 18 17 32 32 H 1.09011 * 108.86936 * 359.97438 * 20 18 17 33 33 H 1.09000 * 110.79063 * 142.80636 * 21 20 18 34 34 H 1.08998 * 110.78998 * 266.25856 * 21 20 18 35 35 H 1.09004 * 110.78393 * 332.92733 * 23 18 17 36 36 H 1.09000 * 110.78415 * 96.37963 * 23 18 17 37 37 H 1.07997 * 120.15558 * 180.24708 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3844 2.1073 -1.3947 5 1 1.4965 2.6199 0.8028 6 1 3.5886 1.4120 0.5920 7 6 2.0079 -1.2119 -0.0005 8 1 2.9930 -1.2665 -0.4398 9 6 1.4250 -2.3649 0.5741 10 6 0.4002 -2.2388 1.5310 11 6 -0.1627 -3.3657 2.0856 12 6 0.2702 -4.6247 1.7026 13 6 1.2868 -4.7648 0.7614 14 7 1.7203 -6.0415 0.3861 15 6 2.0292 -6.2970 -0.9007 16 8 1.8355 -5.4508 -1.7520 17 7 2.5479 -7.4925 -1.2446 18 6 2.8842 -7.7701 -2.6432 19 1 3.2353 -6.8498 -3.1099 20 6 4.0040 -8.8019 -2.6852 21 6 3.6042 -10.0794 -3.4517 22 16 2.2770 -9.4750 -4.5731 23 6 1.6140 -8.2482 -3.3763 24 6 1.8648 -3.6446 0.1929 25 1 -0.4850 0.8401 0.0004 26 1 0.0563 -1.2594 1.8294 27 1 -0.9492 -3.2681 2.8194 28 1 -0.1810 -5.5032 2.1398 29 1 1.7985 -6.7424 1.0520 30 1 2.6985 -8.1691 -0.5661 31 1 4.8742 -8.3584 -3.1690 32 1 4.2724 -9.0727 -1.6639 33 1 4.4471 -10.4672 -4.0238 34 1 3.2184 -10.8359 -2.7684 35 1 0.9208 -8.7213 -2.6807 36 1 1.1345 -7.4206 -3.8991 37 1 2.6506 -3.7523 -0.5400 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334730820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:30 Heat of formation + Delta-G solvation = -28.301171 kcal Electronic energy + Delta-G solvation = -20388.157491 eV Core-core repulsion = 17255.268166 eV Total energy + Delta-G solvation = -3132.889326 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.52631 -39.36638 -37.75437 -36.14046 -34.93876 -33.57502 -31.77570 -30.47256 -29.42196 -27.23931 -26.09235 -23.55800 -22.73805 -21.71563 -21.59246 -19.67432 -19.32978 -17.98456 -17.40020 -17.06532 -16.58973 -16.42589 -16.37902 -15.63476 -15.42610 -15.16952 -14.80754 -14.67662 -14.27212 -13.97868 -13.57329 -13.29138 -13.13430 -12.92825 -12.80200 -12.67069 -12.56476 -12.22639 -12.08064 -11.90389 -11.58762 -11.30459 -11.18971 -11.04506 -10.66793 -10.18376 -9.43165 -8.82194 -8.74271 -8.71441 -6.33028 0.76728 0.93224 1.03505 1.26197 1.35995 1.46207 1.55124 1.71420 2.15253 2.20946 2.67852 3.28700 3.43151 3.73408 3.74183 3.85478 4.08997 4.14410 4.47213 4.52286 4.63631 4.66048 4.79463 4.82388 5.02711 5.04728 5.09173 5.12894 5.22157 5.31596 5.41710 5.72337 5.83131 6.05910 6.07711 6.18539 6.36554 6.67040 6.92546 7.01540 7.09996 7.60137 8.26434 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023439 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.296774 B = 8325.064244 C = 8973.428810 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.045 3.955 3 Si 0.977 3.023 4 H -0.263 1.263 5 H -0.258 1.258 6 H -0.258 1.258 7 C -0.509 4.509 8 H 0.067 0.933 9 C 0.094 3.906 10 C -0.210 4.210 11 C -0.085 4.085 12 C -0.258 4.258 13 C 0.181 3.819 14 N -0.669 5.669 15 C 0.694 3.306 16 O -0.618 6.618 17 N -0.718 5.718 18 C 0.163 3.837 19 H 0.072 0.928 20 C -0.126 4.126 21 C -0.047 4.047 22 S -0.340 6.340 23 C -0.068 4.068 24 C -0.239 4.239 25 H 0.292 0.708 26 H 0.095 0.905 27 H 0.123 0.877 28 H 0.131 0.869 29 H 0.419 0.581 30 H 0.416 0.584 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.128 0.872 34 H 0.112 0.888 35 H 0.099 0.901 36 H 0.083 0.917 37 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.731 -18.355 0.105 19.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.172 4.172 3 Si 0.797 3.203 4 H -0.188 1.188 5 H -0.182 1.182 6 H -0.182 1.182 7 C -0.538 4.538 8 H 0.085 0.915 9 C 0.091 3.909 10 C -0.230 4.230 11 C -0.104 4.104 12 C -0.279 4.279 13 C 0.088 3.912 14 N -0.319 5.319 15 C 0.394 3.606 16 O -0.496 6.496 17 N -0.377 5.377 18 C 0.055 3.945 19 H 0.090 0.910 20 C -0.165 4.165 21 C -0.194 4.194 22 S -0.115 6.115 23 C -0.217 4.217 24 C -0.261 4.261 25 H 0.103 0.897 26 H 0.113 0.887 27 H 0.141 0.859 28 H 0.148 0.852 29 H 0.257 0.743 30 H 0.255 0.745 31 H 0.114 0.886 32 H 0.131 0.869 33 H 0.146 0.854 34 H 0.131 0.869 35 H 0.118 0.882 36 H 0.101 0.899 37 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 6.056 -17.825 -1.853 18.916 hybrid contribution 0.338 0.818 1.259 1.539 sum 6.394 -17.007 -0.593 18.179 Atomic orbital electron populations 1.69932 1.09334 1.31089 1.33086 1.26757 0.95227 1.04530 0.90712 0.85297 0.79578 0.75963 0.79488 1.18826 1.18222 1.18205 1.19724 1.03121 0.94668 1.36268 0.91515 1.17760 0.91021 0.92141 0.89955 1.21124 1.02924 0.97594 1.01348 1.20790 0.98565 0.92211 0.98856 1.20424 1.02455 0.97411 1.07587 1.17227 0.94529 0.82859 0.96612 1.42306 1.69519 1.11988 1.08042 1.16250 0.78451 0.83157 0.82698 1.90996 1.60121 1.48188 1.50316 1.45174 1.68119 1.14420 1.10001 1.21505 0.92697 1.00035 0.80241 0.90985 1.22177 0.97221 0.93002 1.04083 1.24283 0.97654 0.99366 0.98110 1.88275 1.44396 1.50200 1.28579 1.24553 1.00460 0.98557 0.98169 1.20759 1.06827 0.92181 1.06322 0.89750 0.88661 0.85929 0.85159 0.74289 0.74544 0.88617 0.86889 0.85420 0.86933 0.88236 0.89855 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -44.17 11.47 21.82 0.25 -43.92 16 2 C 0.05 2.40 4.90 85.25 0.42 2.82 16 3 Si 0.98 39.73 29.64 68.60 2.03 41.76 16 4 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 5 H -0.26 -9.72 7.11 99.48 0.71 -9.02 16 6 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 7 C -0.51 -29.71 8.99 23.46 0.21 -29.50 16 8 H 0.07 3.87 7.98 -2.91 -0.02 3.84 16 9 C 0.09 5.45 5.57 -21.31 -0.12 5.33 16 10 C -0.21 -11.34 8.75 22.75 0.20 -11.14 16 11 C -0.09 -3.91 10.02 22.20 0.22 -3.68 16 12 C -0.26 -10.79 9.97 22.58 0.23 -10.56 16 13 C 0.18 8.13 6.16 38.10 0.23 8.37 16 14 N -0.67 -22.33 5.33 -317.33 -1.69 -24.02 16 15 C 0.69 24.22 8.21 179.05 1.47 25.69 16 16 O -0.62 -29.45 14.06 -3.97 -0.06 -29.51 16 17 N -0.72 -15.65 4.93 -456.83 -2.25 -17.91 16 18 C 0.16 3.48 2.93 45.20 0.13 3.61 16 19 H 0.07 2.06 7.52 -2.39 -0.02 2.04 16 20 C -0.13 -1.49 6.09 30.80 0.19 -1.31 16 21 C -0.05 -0.50 7.46 72.41 0.54 0.04 16 22 S -0.34 -7.08 23.26 -56.49 -1.31 -8.39 16 23 C -0.07 -1.58 7.04 72.41 0.51 -1.07 16 24 C -0.24 -12.98 8.39 22.85 0.19 -12.78 16 25 H 0.29 14.15 8.30 -92.71 -0.77 13.38 16 26 H 0.10 5.30 6.37 -2.91 -0.02 5.28 16 27 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 28 H 0.13 4.36 8.06 -2.91 -0.02 4.33 16 29 H 0.42 9.54 8.84 -92.71 -0.82 8.72 16 30 H 0.42 5.30 8.24 -92.71 -0.76 4.54 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.11 0.77 7.44 -2.38 -0.02 0.75 16 33 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.10 2.15 8.05 -2.39 -0.02 2.13 16 36 H 0.08 2.42 8.14 -2.39 -0.02 2.40 16 37 H 0.08 4.48 6.83 -2.91 -0.02 4.46 16 Total: -1.00 -76.06 322.76 0.92 -75.14 By element: Atomic # 1 Polarization: 31.51 SS G_CDS: -0.47 Total: 31.03 kcal Atomic # 6 Polarization: -28.60 SS G_CDS: 4.42 Total: -24.18 kcal Atomic # 7 Polarization: -82.16 SS G_CDS: -3.69 Total: -85.85 kcal Atomic # 8 Polarization: -29.45 SS G_CDS: -0.06 Total: -29.51 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.76 kcal Atomic # 16 Polarization: -7.08 SS G_CDS: -1.31 Total: -8.39 kcal Total: -76.06 0.92 -75.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334730820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.836 kcal (2) G-P(sol) polarization free energy of solvation -76.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds