Wall clock time and date at job start Tue Mar 31 2020 06:15:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47218 * 240.00130 * 3 2 1 5 5 H 1.48498 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47072 * 120.00160 * 3 2 1 7 7 C 1.39935 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 185.48670 * 7 2 1 9 9 C 1.41405 * 120.00060 * 5.48709 * 7 2 1 10 10 C 1.40779 * 120.20954 * 34.30922 * 9 7 2 11 11 C 1.37636 * 119.88419 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.32315 * 0.02562 * 11 10 9 13 13 C 1.39245 * 120.42693 * 359.97438 * 12 11 10 14 14 N 1.39955 * 119.94389 * 179.72112 * 13 12 11 15 15 C 1.34783 * 119.99368 * 145.38632 * 14 13 12 16 16 O 1.21580 * 120.00489 * 354.44120 * 15 14 13 17 17 N 1.34777 * 119.99501 * 174.44292 * 15 14 13 18 18 C 1.46376 * 119.64803 * 185.27475 * 17 15 14 19 19 C 1.53755 * 109.20679 * 114.91392 * 18 17 15 20 20 S 1.81741 * 108.75370 * 57.83112 * 19 18 17 21 21 C 1.81742 * 102.30677 * 305.34713 * 20 19 18 22 22 C 1.46382 * 119.64955 * 5.54977 * 17 15 14 23 23 C 1.38273 * 120.10681 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00166 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.05631 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.83872 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.78298 * 180.02562 * 12 11 10 28 28 H 0.96994 * 120.00060 * 325.38597 * 14 13 12 29 29 H 1.08992 * 109.47436 * 234.92069 * 18 17 15 30 30 H 1.08999 * 109.46581 * 354.90929 * 18 17 15 31 31 H 1.09011 * 109.69915 * 297.99728 * 19 18 17 32 32 H 1.08997 * 109.62788 * 177.63088 * 19 18 17 33 33 H 1.08991 * 109.58596 * 294.74362 * 21 20 19 34 34 H 1.09003 * 109.69137 * 174.39724 * 21 20 19 35 35 H 1.09009 * 109.46686 * 5.09154 * 22 17 15 36 36 H 1.09000 * 109.46746 * 125.07841 * 22 17 15 37 37 H 1.07998 * 120.16462 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0842 -1.2139 0.0900 9 6 1.3058 -2.4337 -0.1160 10 6 0.1425 -2.5097 -0.9053 11 6 -0.5354 -3.7026 -1.0145 12 6 -0.0790 -4.8297 -0.3508 13 6 1.0701 -4.7695 0.4334 14 7 1.5188 -5.9129 1.1042 15 6 2.8403 -6.1277 1.2598 16 8 3.6436 -5.3835 0.7315 17 7 3.2712 -7.1677 2.0009 18 6 4.7028 -7.3275 2.2611 19 6 4.9652 -7.1590 3.7667 20 16 3.9755 -8.3845 4.6731 21 6 2.2958 -8.0540 4.0626 22 6 2.3032 -8.1287 2.5321 23 6 1.7655 -3.5805 0.5547 24 1 -0.4850 0.8400 0.0004 25 1 -0.2173 -1.6336 -1.4242 26 1 -1.4279 -3.7600 -1.6198 27 1 -0.6175 -5.7613 -0.4429 28 1 0.8789 -6.5507 1.4571 29 1 5.0212 -8.3202 1.9432 30 1 5.2593 -6.5724 1.7060 31 1 4.6788 -6.1547 4.0794 32 1 6.0233 -7.3183 3.9740 33 1 1.9814 -7.0594 4.3784 34 1 1.6070 -8.7987 4.4614 35 1 1.3095 -7.8912 2.1520 36 1 2.5810 -9.1351 2.2187 37 1 2.6566 -3.5326 1.1630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000334739820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:27 Heat of formation + Delta-G solvation = 6.146361 kcal Electronic energy + Delta-G solvation = -20853.323846 eV Core-core repulsion = 17721.928277 eV Total energy + Delta-G solvation = -3131.395569 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.41568 -37.71556 -36.21141 -34.61052 -33.12707 -31.84549 -30.22122 -29.79593 -27.83922 -25.27407 -23.98561 -23.53858 -21.22051 -20.89999 -19.44842 -18.59281 -17.47904 -16.46890 -16.03577 -15.45678 -15.33055 -14.80288 -14.66170 -14.45576 -14.24823 -13.93694 -13.61504 -13.12530 -13.01462 -12.81160 -12.57668 -12.15939 -11.94835 -11.66322 -11.24689 -11.18341 -11.08249 -10.94480 -10.46899 -10.20920 -10.04754 -9.70908 -9.48229 -9.23022 -9.00237 -8.93830 -7.90650 -7.37430 -6.90706 -6.60510 -4.34624 1.47585 2.23889 2.59494 2.79258 2.92120 3.11562 3.15815 3.21591 3.56614 3.95585 4.02552 4.41925 4.66806 4.72324 4.78836 4.86657 4.90110 5.16015 5.24491 5.48164 5.56658 5.68173 5.70544 6.19430 6.32877 6.34885 6.67450 6.73272 7.02053 7.09211 7.19274 7.31042 7.64675 7.75003 7.95355 8.12758 8.20866 8.32896 8.67883 8.84464 8.98278 8.99723 10.33505 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.003935 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.991104 B = 7114.536573 C = 7869.706550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.074 3.926 3 Si 0.912 3.088 4 H -0.265 1.265 5 H -0.279 1.279 6 H -0.267 1.267 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.121 3.879 10 C -0.158 4.158 11 C -0.096 4.096 12 C -0.252 4.252 13 C 0.160 3.840 14 N -0.680 5.680 15 C 0.701 3.299 16 O -0.559 6.559 17 N -0.638 5.638 18 C 0.129 3.871 19 C -0.099 4.099 20 S -0.262 6.262 21 C -0.103 4.103 22 C 0.112 3.888 23 C -0.200 4.200 24 H 0.278 0.722 25 H 0.119 0.881 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.393 0.607 29 H 0.079 0.921 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.089 0.911 34 H 0.115 0.885 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.177 -14.326 6.563 16.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.438 5.438 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.192 1.192 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.119 3.881 10 C -0.178 4.178 11 C -0.116 4.116 12 C -0.274 4.274 13 C 0.068 3.932 14 N -0.328 5.328 15 C 0.403 3.597 16 O -0.434 6.434 17 N -0.378 5.378 18 C 0.004 3.996 19 C -0.249 4.249 20 S -0.036 6.036 21 C -0.252 4.252 22 C -0.014 4.014 23 C -0.222 4.222 24 H 0.089 0.911 25 H 0.136 0.864 26 H 0.111 0.889 27 H 0.107 0.893 28 H 0.229 0.771 29 H 0.098 0.902 30 H 0.127 0.873 31 H 0.108 0.892 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.134 0.866 35 H 0.107 0.893 36 H 0.103 0.897 37 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.935 -14.370 6.960 16.445 hybrid contribution -0.525 1.245 -0.419 1.415 sum 3.411 -13.125 6.541 15.056 Atomic orbital electron populations 1.69764 1.07268 1.28893 1.37898 1.25832 0.94868 1.00976 0.92495 0.86311 0.79889 0.80259 0.79849 1.18960 1.20443 1.19160 1.19490 0.94909 0.90028 1.45119 0.90582 1.17498 0.91280 0.91598 0.87766 1.21370 0.98589 0.96243 1.01567 1.20484 0.98557 0.93274 0.99236 1.20060 1.01315 0.98209 1.07793 1.17262 0.95972 0.84341 0.95580 1.42818 1.04989 1.25298 1.59737 1.15917 0.83243 0.80949 0.79597 1.90971 1.53519 1.47651 1.51267 1.47174 1.07173 1.27505 1.55903 1.21566 0.80748 1.03738 0.93543 1.24011 1.02437 1.00651 0.97755 1.86786 1.05376 1.50420 1.60973 1.23876 0.96314 1.06459 0.98594 1.21659 0.93531 0.94238 0.91951 1.21092 1.03302 0.91817 1.05957 0.91103 0.86358 0.88896 0.89280 0.77061 0.90248 0.87263 0.89240 0.86667 0.89199 0.86630 0.89322 0.89650 0.87591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.44 10.96 55.55 0.61 -20.83 16 2 C 0.07 1.91 5.31 -17.35 -0.09 1.81 16 3 Si 0.91 19.46 29.56 -169.99 -5.03 14.44 16 4 H -0.26 -5.60 7.11 56.52 0.40 -5.19 16 5 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 6 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 7 C -0.46 -12.87 9.04 -37.74 -0.34 -13.22 16 8 H 0.08 2.08 7.85 -52.48 -0.41 1.67 16 9 C 0.12 3.35 5.50 -106.85 -0.59 2.76 16 10 C -0.16 -4.14 8.62 -38.84 -0.33 -4.47 16 11 C -0.10 -2.23 10.02 -39.69 -0.40 -2.63 16 12 C -0.25 -5.48 9.97 -39.10 -0.39 -5.87 16 13 C 0.16 3.62 6.24 -83.76 -0.52 3.10 16 14 N -0.68 -12.11 5.24 -14.27 -0.07 -12.19 16 15 C 0.70 12.65 7.98 -86.91 -0.69 11.96 16 16 O -0.56 -12.61 13.44 5.30 0.07 -12.54 16 17 N -0.64 -8.36 2.78 -179.00 -0.50 -8.85 16 18 C 0.13 1.48 6.27 -3.72 -0.02 1.46 16 19 C -0.10 -1.01 6.68 37.55 0.25 -0.76 16 20 S -0.26 -2.67 22.29 -107.50 -2.40 -5.07 16 21 C -0.10 -0.91 6.67 37.28 0.25 -0.67 16 22 C 0.11 1.05 6.19 -3.98 -0.02 1.02 16 23 C -0.20 -5.20 8.39 -38.69 -0.32 -5.53 16 24 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 25 H 0.12 3.19 6.46 -52.49 -0.34 2.85 16 26 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 27 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 28 H 0.39 5.43 6.20 -40.82 -0.25 5.18 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.11 1.45 6.87 -51.93 -0.36 1.09 16 31 H 0.09 1.05 8.14 -51.92 -0.42 0.62 16 32 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 34 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.09 0.74 5.48 -51.92 -0.28 0.46 16 36 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.11 2.86 6.52 -52.49 -0.34 2.52 16 LS Contribution 315.11 15.07 4.75 4.75 Total: -1.00 -31.39 315.11 -10.30 -41.69 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -4.50 Total: 9.62 kcal Atomic # 6 Polarization: -7.79 SS G_CDS: -3.23 Total: -11.03 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.04 Total: -41.87 kcal Atomic # 8 Polarization: -12.61 SS G_CDS: 0.07 Total: -12.54 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.03 Total: 14.44 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.40 Total: -5.07 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.39 -10.30 -41.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334739820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.839 kcal (2) G-P(sol) polarization free energy of solvation -31.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds