Wall clock time and date at job start Tue Mar 31 2020 06:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30823 * 1 3 3 Si 1.86800 * 119.99974 * 2 1 4 4 H 1.48500 * 109.47218 * 240.00130 * 3 2 1 5 5 H 1.48498 * 109.47069 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47072 * 120.00160 * 3 2 1 7 7 C 1.39935 * 120.00054 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99588 * 185.48670 * 7 2 1 9 9 C 1.41405 * 120.00060 * 5.48709 * 7 2 1 10 10 C 1.40779 * 120.20954 * 34.30922 * 9 7 2 11 11 C 1.37636 * 119.88419 * 179.97438 * 10 9 7 12 12 C 1.38536 * 120.32315 * 0.02562 * 11 10 9 13 13 C 1.39245 * 120.42693 * 359.97438 * 12 11 10 14 14 N 1.39955 * 119.94389 * 179.72112 * 13 12 11 15 15 C 1.34783 * 119.99368 * 145.38632 * 14 13 12 16 16 O 1.21580 * 120.00489 * 354.44120 * 15 14 13 17 17 N 1.34777 * 119.99501 * 174.44292 * 15 14 13 18 18 C 1.46376 * 119.64803 * 185.27475 * 17 15 14 19 19 C 1.53755 * 109.20679 * 114.91392 * 18 17 15 20 20 S 1.81741 * 108.75370 * 57.83112 * 19 18 17 21 21 C 1.81742 * 102.30677 * 305.34713 * 20 19 18 22 22 C 1.46382 * 119.64955 * 5.54977 * 17 15 14 23 23 C 1.38273 * 120.10681 * 359.97438 * 13 12 11 24 24 H 0.97000 * 120.00166 * 359.97438 * 1 2 3 25 25 H 1.07997 * 120.05631 * 359.97438 * 10 9 7 26 26 H 1.08002 * 119.83872 * 179.97438 * 11 10 9 27 27 H 1.07996 * 119.78298 * 180.02562 * 12 11 10 28 28 H 0.96994 * 120.00060 * 325.38597 * 14 13 12 29 29 H 1.08992 * 109.47436 * 234.92069 * 18 17 15 30 30 H 1.08999 * 109.46581 * 354.90929 * 18 17 15 31 31 H 1.09011 * 109.69915 * 297.99728 * 19 18 17 32 32 H 1.08997 * 109.62788 * 177.63088 * 19 18 17 33 33 H 1.08991 * 109.58596 * 294.74362 * 21 20 19 34 34 H 1.09003 * 109.69137 * 174.39724 * 21 20 19 35 35 H 1.09009 * 109.46686 * 5.09154 * 22 17 15 36 36 H 1.09000 * 109.46746 * 125.07841 * 22 17 15 37 37 H 1.07998 * 120.16462 * 179.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.0960 1.6964 -1.2125 5 1 1.2772 2.7464 0.0006 6 1 3.0960 1.6964 1.2125 7 6 2.0079 -1.2119 0.0005 8 1 3.0842 -1.2139 0.0900 9 6 1.3058 -2.4337 -0.1160 10 6 0.1425 -2.5097 -0.9053 11 6 -0.5354 -3.7026 -1.0145 12 6 -0.0790 -4.8297 -0.3508 13 6 1.0701 -4.7695 0.4334 14 7 1.5188 -5.9129 1.1042 15 6 2.8403 -6.1277 1.2598 16 8 3.6436 -5.3835 0.7315 17 7 3.2712 -7.1677 2.0009 18 6 4.7028 -7.3275 2.2611 19 6 4.9652 -7.1590 3.7667 20 16 3.9755 -8.3845 4.6731 21 6 2.2958 -8.0540 4.0626 22 6 2.3032 -8.1287 2.5321 23 6 1.7655 -3.5805 0.5547 24 1 -0.4850 0.8400 0.0004 25 1 -0.2173 -1.6336 -1.4242 26 1 -1.4279 -3.7600 -1.6198 27 1 -0.6175 -5.7613 -0.4429 28 1 0.8789 -6.5507 1.4571 29 1 5.0212 -8.3202 1.9432 30 1 5.2593 -6.5724 1.7060 31 1 4.6788 -6.1547 4.0794 32 1 6.0233 -7.3183 3.9740 33 1 1.9814 -7.0594 4.3784 34 1 1.6070 -8.7987 4.4614 35 1 1.3095 -7.8912 2.1520 36 1 2.5810 -9.1351 2.2187 37 1 2.6566 -3.5326 1.1630 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334739820.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:26 Heat of formation + Delta-G solvation = -12.404462 kcal Electronic energy + Delta-G solvation = -20854.128270 eV Core-core repulsion = 17721.928277 eV Total energy + Delta-G solvation = -3132.199993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.80401 -39.39507 -37.53392 -36.30207 -34.90916 -32.79581 -31.73197 -31.34624 -29.48338 -27.24051 -24.89984 -24.68339 -22.91547 -22.62676 -20.84978 -20.00596 -19.15003 -17.58849 -17.48471 -16.98741 -16.68302 -16.46991 -16.04224 -15.78897 -15.26644 -15.10033 -14.81943 -14.70328 -14.50801 -13.98171 -13.88127 -13.60707 -13.43692 -12.98303 -12.90264 -12.83096 -12.74249 -12.21038 -12.13244 -11.89113 -11.54376 -11.24429 -11.07826 -10.89383 -10.77586 -10.04431 -9.32096 -8.78928 -8.68386 -8.52039 -6.40267 0.68241 0.90335 1.00245 1.35984 1.44025 1.46959 1.47927 1.54038 2.06344 2.22635 2.76000 2.80133 3.61944 3.68745 3.79649 4.01049 4.01899 4.15054 4.32649 4.46012 4.55767 4.60148 4.62398 4.74465 4.83791 5.01008 5.08867 5.11023 5.12089 5.31569 5.40700 5.61516 5.80571 5.95246 6.06266 6.12838 6.36844 6.68906 6.84226 6.95393 7.00682 7.46364 8.41483 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021819 B = 0.003935 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.991104 B = 7114.536573 C = 7869.706550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.036 3.964 3 Si 0.982 3.018 4 H -0.262 1.262 5 H -0.261 1.261 6 H -0.266 1.266 7 C -0.509 4.509 8 H 0.060 0.940 9 C 0.090 3.910 10 C -0.183 4.183 11 C -0.094 4.094 12 C -0.238 4.238 13 C 0.168 3.832 14 N -0.668 5.668 15 C 0.696 3.304 16 O -0.612 6.612 17 N -0.628 5.628 18 C 0.127 3.873 19 C -0.094 4.094 20 S -0.267 6.267 21 C -0.098 4.098 22 C 0.107 3.893 23 C -0.225 4.225 24 H 0.286 0.714 25 H 0.102 0.898 26 H 0.127 0.873 27 H 0.136 0.864 28 H 0.415 0.585 29 H 0.106 0.894 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.076 0.924 34 H 0.146 0.854 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.076 -16.584 7.103 18.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.177 4.177 3 Si 0.803 3.197 4 H -0.186 1.186 5 H -0.185 1.185 6 H -0.191 1.191 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.087 3.913 10 C -0.203 4.203 11 C -0.112 4.112 12 C -0.259 4.259 13 C 0.075 3.925 14 N -0.319 5.319 15 C 0.398 3.602 16 O -0.491 6.491 17 N -0.366 5.366 18 C 0.002 3.998 19 C -0.243 4.243 20 S -0.041 6.041 21 C -0.247 4.247 22 C -0.017 4.017 23 C -0.247 4.247 24 H 0.097 0.903 25 H 0.120 0.880 26 H 0.145 0.855 27 H 0.153 0.847 28 H 0.256 0.744 29 H 0.124 0.876 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.154 0.846 33 H 0.094 0.906 34 H 0.164 0.836 35 H 0.121 0.879 36 H 0.129 0.871 37 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 2.812 -16.716 7.547 18.555 hybrid contribution -0.207 1.723 -0.534 1.815 sum 2.605 -14.993 7.013 16.756 Atomic orbital electron populations 1.69812 1.08408 1.30188 1.38059 1.26614 0.95760 1.03896 0.91437 0.85263 0.78715 0.75984 0.79727 1.18636 1.18534 1.19064 1.19654 0.94468 0.91755 1.48141 0.92185 1.17814 0.92424 0.92247 0.88788 1.21313 0.99161 0.97259 1.02541 1.20869 0.99008 0.92404 0.98965 1.20508 1.00431 0.99476 1.05481 1.17313 0.95520 0.84644 0.95051 1.42561 1.05635 1.24371 1.59380 1.16140 0.82750 0.81505 0.79758 1.90948 1.54770 1.49863 1.53503 1.47224 1.08545 1.26472 1.54326 1.21707 0.79618 1.04291 0.94169 1.23928 1.03927 0.99727 0.96704 1.86839 1.06268 1.49753 1.61207 1.23930 0.95939 1.06724 0.98087 1.21994 0.93229 0.94308 0.92203 1.21022 1.03413 0.93392 1.06908 0.90323 0.88007 0.85544 0.84667 0.74404 0.87593 0.89736 0.91354 0.84634 0.90570 0.83584 0.87903 0.87067 0.90059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -45.50 10.96 21.82 0.24 -45.26 16 2 C 0.04 1.91 5.31 85.25 0.45 2.36 16 3 Si 0.98 41.02 29.56 68.60 2.03 43.05 16 4 H -0.26 -10.71 7.11 99.48 0.71 -10.00 16 5 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 6 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 7 C -0.51 -29.99 9.04 23.46 0.21 -29.78 16 8 H 0.06 3.55 7.85 -2.91 -0.02 3.53 16 9 C 0.09 5.21 5.50 -21.31 -0.12 5.09 16 10 C -0.18 -9.82 8.62 22.75 0.20 -9.63 16 11 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 12 C -0.24 -9.71 9.97 22.58 0.23 -9.49 16 13 C 0.17 7.51 6.24 38.09 0.24 7.75 16 14 N -0.67 -22.83 5.24 -317.33 -1.66 -24.50 16 15 C 0.70 24.99 7.98 179.05 1.43 26.42 16 16 O -0.61 -28.74 13.44 -3.97 -0.05 -28.80 16 17 N -0.63 -15.52 2.78 -838.51 -2.33 -17.85 16 18 C 0.13 2.79 6.27 86.66 0.54 3.33 16 19 C -0.09 -1.82 6.68 72.24 0.48 -1.34 16 20 S -0.27 -4.83 22.29 -56.49 -1.26 -6.09 16 21 C -0.10 -1.44 6.67 72.06 0.48 -0.96 16 22 C 0.11 1.63 6.19 86.48 0.53 2.17 16 23 C -0.23 -12.25 8.39 22.85 0.19 -12.06 16 24 H 0.29 14.07 8.30 -92.71 -0.77 13.30 16 25 H 0.10 5.71 6.46 -2.91 -0.02 5.69 16 26 H 0.13 4.76 8.06 -2.91 -0.02 4.73 16 27 H 0.14 4.30 8.06 -2.91 -0.02 4.28 16 28 H 0.42 10.13 6.20 -92.71 -0.57 9.56 16 29 H 0.11 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.08 2.33 6.87 -2.39 -0.02 2.31 16 31 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 32 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 33 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.15 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.10 1.29 5.48 -2.38 -0.01 1.28 16 36 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.08 4.72 6.52 -2.91 -0.02 4.70 16 Total: -1.00 -73.05 315.11 2.57 -70.48 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.52 Total: 29.06 kcal Atomic # 6 Polarization: -25.19 SS G_CDS: 5.09 Total: -20.10 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -3.75 Total: -87.60 kcal Atomic # 8 Polarization: -28.74 SS G_CDS: -0.05 Total: -28.80 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.26 Total: -6.09 kcal Total: -73.05 2.57 -70.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334739820.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.071 kcal (2) G-P(sol) polarization free energy of solvation -73.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds