Wall clock time and date at job start Tue Mar 31 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86809 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47005 * 239.99794 * 3 2 1 5 5 H 1.48500 * 109.46846 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46788 * 119.99847 * 3 2 1 7 7 C 1.40031 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00225 * 197.30367 * 7 2 1 9 9 C 1.41543 * 119.99756 * 17.30080 * 7 2 1 10 10 C 1.41176 * 120.99456 * 203.43971 * 9 7 2 11 11 C 1.37587 * 119.01676 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10799 * 0.02562 * 11 10 9 13 13 C 1.32473 * 122.23040 * 359.97438 * 12 11 10 14 14 N 1.39464 * 119.58035 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00058 * 354.81132 * 14 13 12 16 16 O 1.21284 * 119.99738 * 4.84545 * 15 14 13 17 17 C 1.50698 * 120.00071 * 184.84420 * 15 14 13 18 18 H 1.09002 * 109.38739 * 300.19115 * 17 15 14 19 19 C 1.52583 * 109.38844 * 180.49824 * 17 15 14 20 20 C 1.52581 * 110.72856 * 169.17482 * 19 17 15 21 21 C 1.53100 * 109.95403 * 70.66910 * 20 19 17 22 22 S 1.81745 * 108.84325 * 296.97918 * 21 20 19 23 23 C 1.53089 * 109.39133 * 60.00019 * 17 15 14 24 24 C 1.38601 * 120.83888 * 0.02562 * 13 12 11 25 25 H 0.97000 * 120.00676 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.49159 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.44796 * 180.02562 * 11 10 9 28 28 H 0.96995 * 120.00410 * 174.80784 * 14 13 12 29 29 H 1.09003 * 109.22604 * 289.49509 * 19 17 15 30 30 H 1.08998 * 109.22798 * 48.85111 * 19 17 15 31 31 H 1.09001 * 109.38687 * 310.52496 * 20 19 17 32 32 H 1.08999 * 109.31086 * 190.76636 * 20 19 17 33 33 H 1.09001 * 109.57592 * 177.17145 * 21 20 19 34 34 H 1.09004 * 109.57513 * 56.78505 * 21 20 19 35 35 H 1.08999 * 109.57927 * 302.97805 * 23 17 15 36 36 H 1.09002 * 109.57991 * 63.23576 * 23 17 15 37 37 H 1.07998 * 120.60079 * 179.72739 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2337 0.2787 9 6 1.3479 -2.4109 -0.3635 10 6 1.8249 -3.6654 0.0746 11 6 1.1523 -4.8044 -0.3040 12 7 0.0754 -4.7395 -1.0661 13 6 -0.4125 -3.5881 -1.5033 14 7 -1.5531 -3.5840 -2.3058 15 6 -2.0911 -4.7489 -2.7183 16 8 -1.6370 -5.8009 -2.3208 17 6 -3.2568 -4.7441 -3.6733 18 1 -4.0924 -4.2094 -3.2216 19 6 -3.6772 -6.1813 -3.9666 20 6 -5.0093 -6.2134 -4.7099 21 6 -4.8221 -5.6995 -6.1399 22 16 -4.2896 -3.9631 -6.0748 23 6 -2.8474 -4.0441 -4.9717 24 6 0.1969 -2.3875 -1.1742 25 1 -0.4851 0.8400 -0.0004 26 1 2.7047 -3.7300 0.6976 27 1 1.5109 -5.7676 0.0274 28 1 -1.9593 -2.7428 -2.5671 29 1 -2.9131 -6.6610 -4.5784 30 1 -3.7772 -6.7249 -3.0271 31 1 -5.7292 -5.5815 -4.1897 32 1 -5.3812 -7.2375 -4.7392 33 1 -5.7658 -5.7721 -6.6805 34 1 -4.0626 -6.2957 -6.6457 35 1 -2.5009 -3.0349 -4.7490 36 1 -2.0478 -4.6067 -5.4536 37 1 -0.2016 -1.4513 -1.5363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335187927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:20 Heat of formation + Delta-G solvation = -14.030726 kcal Electronic energy + Delta-G solvation = -20639.258463 eV Core-core repulsion = 17506.987950 eV Total energy + Delta-G solvation = -3132.270513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.93845 -38.13142 -36.21359 -34.38048 -33.82065 -31.93308 -30.56486 -28.55590 -27.35812 -26.03666 -24.28201 -22.14272 -21.92040 -20.66677 -19.50044 -17.73722 -17.50013 -16.31177 -15.79436 -15.55171 -15.17891 -14.84546 -14.26384 -14.22368 -14.06675 -13.72743 -13.53302 -13.25543 -12.95999 -12.76343 -12.62486 -12.25007 -11.65940 -11.51674 -11.45496 -11.25451 -11.13480 -10.99388 -10.90960 -10.33529 -10.21027 -9.98132 -9.77931 -9.38119 -9.30980 -8.05386 -7.88985 -7.73765 -7.08963 -6.85004 -4.65142 1.56293 2.25186 2.53260 2.76792 2.98619 3.01204 3.16752 3.40337 3.56212 3.81577 4.49245 4.53072 4.61476 4.64291 4.73774 4.93580 5.08032 5.24329 5.30634 5.49423 5.52113 5.63217 5.69608 5.73593 5.97617 6.00269 6.15810 6.54230 6.60561 6.77088 6.90565 7.06033 7.34865 7.41346 7.72072 7.88345 8.16665 8.37624 8.65722 8.70216 8.82434 9.64833 10.01880 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.003863 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.600038 B = 7246.868111 C = 8288.157732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.079 3.921 3 Si 0.911 3.089 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.556 5.556 13 C 0.336 3.664 14 N -0.657 5.657 15 C 0.504 3.496 16 O -0.477 6.477 17 C -0.107 4.107 18 H 0.106 0.894 19 C -0.111 4.111 20 C -0.121 4.121 21 C -0.084 4.084 22 S -0.261 6.261 23 C -0.072 4.072 24 C -0.244 4.244 25 H 0.283 0.717 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.407 0.593 29 H 0.070 0.930 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.110 0.890 36 H 0.090 0.910 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.973 -4.062 -9.381 13.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C -0.140 4.140 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.135 3.865 10 C -0.309 4.309 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.111 3.889 14 N -0.303 5.303 15 C 0.287 3.713 16 O -0.347 6.347 17 C -0.131 4.131 18 H 0.124 0.876 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.232 4.232 22 S -0.034 6.034 23 C -0.221 4.221 24 C -0.269 4.269 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.242 0.758 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -9.784 -4.602 -9.917 14.672 hybrid contribution 1.115 1.124 0.776 1.764 sum -8.668 -3.478 -9.141 13.069 Atomic orbital electron populations 1.69764 1.07727 1.29608 1.34041 1.25957 0.94756 1.01505 0.91805 0.86313 0.80172 0.79820 0.80166 1.18673 1.20199 1.18836 1.19560 0.98094 0.90785 1.40248 0.89965 1.17551 0.89804 0.92256 0.86843 1.21890 1.05370 0.93857 1.09753 1.21758 0.91043 0.96831 0.93890 1.67217 1.15719 1.26469 1.18104 1.18188 0.87369 0.90891 0.92438 1.43466 1.27623 1.09016 1.50154 1.20459 0.84354 0.84417 0.82089 1.90781 1.59600 1.30227 1.54080 1.21580 0.98084 0.98964 0.94433 0.87586 1.21343 0.96653 0.94624 1.02242 1.21754 0.98231 1.02173 0.93786 1.23503 1.04667 0.94562 1.00488 1.86890 1.38529 1.13865 1.64127 1.23435 0.97705 1.05177 0.95744 1.21528 1.02554 0.95563 1.07290 0.90588 0.87987 0.85909 0.75768 0.91147 0.89681 0.90468 0.90457 0.87824 0.89760 0.87175 0.89148 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.08 10.93 55.55 0.61 -18.48 16 2 C 0.08 1.89 5.19 -17.35 -0.09 1.80 16 3 Si 0.91 17.67 29.59 -169.99 -5.03 12.64 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 7 C -0.46 -11.60 9.12 -37.65 -0.34 -11.94 16 8 H 0.08 2.00 7.90 -52.48 -0.41 1.59 16 9 C 0.14 3.74 5.61 -106.55 -0.60 3.15 16 10 C -0.28 -6.95 9.90 -38.70 -0.38 -7.33 16 11 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 12 N -0.56 -14.04 7.85 -12.52 -0.10 -14.14 16 13 C 0.34 8.01 7.42 -154.70 -1.15 6.87 16 14 N -0.66 -12.48 5.22 -11.49 -0.06 -12.54 16 15 C 0.50 9.06 7.10 -10.98 -0.08 8.98 16 16 O -0.48 -10.55 14.03 5.55 0.08 -10.47 16 17 C -0.11 -1.36 2.37 -91.94 -0.22 -1.58 16 18 H 0.11 1.22 8.05 -51.93 -0.42 0.80 16 19 C -0.11 -1.29 4.38 -27.16 -0.12 -1.41 16 20 C -0.12 -1.06 5.75 -26.89 -0.15 -1.21 16 21 C -0.08 -0.72 6.45 37.21 0.24 -0.48 16 22 S -0.26 -2.85 22.33 -107.50 -2.40 -5.25 16 23 C -0.07 -0.84 5.66 37.20 0.21 -0.63 16 24 C -0.24 -6.10 8.62 -38.48 -0.33 -6.43 16 25 H 0.28 6.23 8.29 -40.82 -0.34 5.89 16 26 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 28 H 0.41 6.42 8.23 -40.82 -0.34 6.08 16 29 H 0.07 0.87 8.08 -51.93 -0.42 0.45 16 30 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 31 H 0.08 0.67 8.05 -51.93 -0.42 0.25 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.11 1.23 7.60 -51.93 -0.39 0.84 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 37 H 0.13 3.14 6.20 -52.49 -0.33 2.82 16 LS Contribution 318.78 15.07 4.80 4.80 Total: -1.00 -30.25 318.78 -10.11 -40.36 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -4.80 Total: 10.66 kcal Atomic # 6 Polarization: -4.37 SS G_CDS: -3.21 Total: -7.58 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.45 Total: -45.16 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.47 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.40 Total: -5.25 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.25 -10.11 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.327 kcal (2) G-P(sol) polarization free energy of solvation -30.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds