Wall clock time and date at job start Tue Mar 31 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30735 * 1 3 3 Si 1.86809 * 119.99815 * 2 1 4 4 H 1.48498 * 109.47005 * 239.99794 * 3 2 1 5 5 H 1.48500 * 109.46846 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.46788 * 119.99847 * 3 2 1 7 7 C 1.40031 * 120.00238 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00225 * 197.30367 * 7 2 1 9 9 C 1.41543 * 119.99756 * 17.30080 * 7 2 1 10 10 C 1.41176 * 120.99456 * 203.43971 * 9 7 2 11 11 C 1.37587 * 119.01676 * 180.02562 * 10 9 7 12 12 N 1.32090 * 121.10799 * 0.02562 * 11 10 9 13 13 C 1.32473 * 122.23040 * 359.97438 * 12 11 10 14 14 N 1.39464 * 119.58035 * 179.97438 * 13 12 11 15 15 C 1.34780 * 120.00058 * 354.81132 * 14 13 12 16 16 O 1.21284 * 119.99738 * 4.84545 * 15 14 13 17 17 C 1.50698 * 120.00071 * 184.84420 * 15 14 13 18 18 H 1.09002 * 109.38739 * 300.19115 * 17 15 14 19 19 C 1.52583 * 109.38844 * 180.49824 * 17 15 14 20 20 C 1.52581 * 110.72856 * 169.17482 * 19 17 15 21 21 C 1.53100 * 109.95403 * 70.66910 * 20 19 17 22 22 S 1.81745 * 108.84325 * 296.97918 * 21 20 19 23 23 C 1.53089 * 109.39133 * 60.00019 * 17 15 14 24 24 C 1.38601 * 120.83888 * 0.02562 * 13 12 11 25 25 H 0.97000 * 120.00676 * 0.02562 * 1 2 3 26 26 H 1.08000 * 120.49159 * 0.02562 * 10 9 7 27 27 H 1.07994 * 119.44796 * 180.02562 * 11 10 9 28 28 H 0.96995 * 120.00410 * 174.80784 * 14 13 12 29 29 H 1.09003 * 109.22604 * 289.49509 * 19 17 15 30 30 H 1.08998 * 109.22798 * 48.85111 * 19 17 15 31 31 H 1.09001 * 109.38687 * 310.52496 * 20 19 17 32 32 H 1.08999 * 109.31086 * 190.76636 * 20 19 17 33 33 H 1.09001 * 109.57592 * 177.17145 * 21 20 19 34 34 H 1.09004 * 109.57513 * 56.78505 * 21 20 19 35 35 H 1.08999 * 109.57927 * 302.97805 * 23 17 15 36 36 H 1.09002 * 109.57991 * 63.23576 * 23 17 15 37 37 H 1.07998 * 120.60079 * 179.72739 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.0951 1.6965 -1.2125 5 1 1.2763 2.7465 -0.0006 6 1 3.0950 1.6965 1.2125 7 6 2.0076 -1.2127 0.0005 8 1 3.0509 -1.2337 0.2787 9 6 1.3479 -2.4109 -0.3635 10 6 1.8249 -3.6654 0.0746 11 6 1.1523 -4.8044 -0.3040 12 7 0.0754 -4.7395 -1.0661 13 6 -0.4125 -3.5881 -1.5033 14 7 -1.5531 -3.5840 -2.3058 15 6 -2.0911 -4.7489 -2.7183 16 8 -1.6370 -5.8009 -2.3208 17 6 -3.2568 -4.7441 -3.6733 18 1 -4.0924 -4.2094 -3.2216 19 6 -3.6772 -6.1813 -3.9666 20 6 -5.0093 -6.2134 -4.7099 21 6 -4.8221 -5.6995 -6.1399 22 16 -4.2896 -3.9631 -6.0748 23 6 -2.8474 -4.0441 -4.9717 24 6 0.1969 -2.3875 -1.1742 25 1 -0.4851 0.8400 -0.0004 26 1 2.7047 -3.7300 0.6976 27 1 1.5109 -5.7676 0.0274 28 1 -1.9593 -2.7428 -2.5671 29 1 -2.9131 -6.6610 -4.5784 30 1 -3.7772 -6.7249 -3.0271 31 1 -5.7292 -5.5815 -4.1897 32 1 -5.3812 -7.2375 -4.7392 33 1 -5.7658 -5.7721 -6.6805 34 1 -4.0626 -6.2957 -6.6457 35 1 -2.5009 -3.0349 -4.7490 36 1 -2.0478 -4.6067 -5.4536 37 1 -0.2016 -1.4513 -1.5363 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335187927.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:20 Heat of formation + Delta-G solvation = -30.623380 kcal Electronic energy + Delta-G solvation = -20639.977974 eV Core-core repulsion = 17506.987950 eV Total energy + Delta-G solvation = -3132.990025 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.47258 -39.82509 -37.31374 -36.13734 -35.54733 -32.94746 -32.42145 -30.28774 -28.24373 -27.92781 -25.47542 -23.86942 -23.32648 -21.97915 -20.92895 -19.48420 -18.80014 -17.62327 -17.34447 -16.99594 -16.53087 -16.09025 -15.90952 -15.69337 -15.36020 -15.17910 -14.66745 -14.54451 -14.34310 -14.12782 -13.91783 -13.73554 -13.20645 -12.94348 -12.66690 -12.59699 -12.43187 -12.08259 -12.00135 -11.96342 -11.86755 -11.50660 -11.15471 -11.02388 -10.62610 -9.97688 -9.60933 -8.90394 -8.72667 -8.65768 -6.58004 0.65992 0.76290 0.98988 1.40586 1.42645 1.51634 1.57309 1.86060 2.11836 2.19234 2.78588 3.53027 3.55416 3.57705 3.74112 3.87480 4.04270 4.10186 4.28775 4.32893 4.50284 4.60161 4.72661 4.79071 4.82577 4.84297 4.90907 5.02028 5.05895 5.11268 5.20385 5.28470 5.46459 5.62009 5.88387 6.11557 6.43953 6.57185 6.77696 6.81122 7.25271 7.81114 8.24020 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021724 B = 0.003863 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.600038 B = 7246.868111 C = 8288.157732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.042 3.958 3 Si 0.986 3.014 4 H -0.260 1.260 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.300 4.300 11 C 0.113 3.887 12 N -0.580 5.580 13 C 0.333 3.667 14 N -0.651 5.651 15 C 0.503 3.497 16 O -0.520 6.520 17 C -0.091 4.091 18 H 0.124 0.876 19 C -0.109 4.109 20 C -0.112 4.112 21 C -0.078 4.078 22 S -0.272 6.272 23 C -0.070 4.070 24 C -0.262 4.262 25 H 0.294 0.706 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.421 0.579 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.126 0.874 34 H 0.088 0.912 35 H 0.112 0.888 36 H 0.083 0.917 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.138 -3.319 -10.373 14.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.176 4.176 3 Si 0.806 3.194 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.324 4.324 11 C -0.040 4.040 12 N -0.300 5.300 13 C 0.107 3.893 14 N -0.298 5.298 15 C 0.288 3.712 16 O -0.393 6.393 17 C -0.114 4.114 18 H 0.142 0.858 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.226 4.226 22 S -0.045 6.045 23 C -0.218 4.218 24 C -0.287 4.287 25 H 0.105 0.895 26 H 0.133 0.867 27 H 0.167 0.833 28 H 0.259 0.741 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.102 0.898 32 H 0.116 0.884 33 H 0.144 0.856 34 H 0.107 0.893 35 H 0.130 0.870 36 H 0.101 0.899 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -10.983 -3.855 -10.929 15.966 hybrid contribution 1.427 0.838 1.082 1.977 sum -9.556 -3.018 -9.847 14.049 Atomic orbital electron populations 1.69793 1.09061 1.31200 1.33342 1.26804 0.95535 1.04531 0.90702 0.85189 0.78820 0.75243 0.80131 1.18437 1.18882 1.18401 1.19863 0.98479 0.91799 1.41483 0.89793 1.17983 0.90623 0.93274 0.87465 1.22075 1.06142 0.93716 1.10436 1.22209 0.90646 0.97900 0.93275 1.67350 1.16507 1.27066 1.19049 1.18449 0.88299 0.90304 0.92228 1.43521 1.26449 1.10468 1.49349 1.21403 0.84829 0.83183 0.81775 1.90753 1.61234 1.31594 1.55682 1.21557 0.95866 1.00401 0.93578 0.85794 1.21345 0.98240 0.93313 1.01806 1.21706 0.96272 1.03687 0.93368 1.23617 1.05815 0.92545 1.00647 1.86974 1.37703 1.16265 1.63526 1.23332 0.98240 1.05016 0.95229 1.21518 1.03147 0.95822 1.08238 0.89547 0.86689 0.83339 0.74110 0.92077 0.91225 0.89850 0.88356 0.85572 0.89288 0.86955 0.89868 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.23 10.93 21.84 0.24 -38.99 16 2 C 0.04 1.99 5.19 85.29 0.44 2.43 16 3 Si 0.99 35.53 29.59 68.60 2.03 37.56 16 4 H -0.26 -9.23 7.11 99.48 0.71 -8.53 16 5 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 6 H -0.26 -9.15 7.11 99.48 0.71 -8.44 16 7 C -0.49 -25.08 9.12 23.52 0.21 -24.86 16 8 H 0.08 4.14 7.90 -2.91 -0.02 4.12 16 9 C 0.11 6.12 5.61 -21.12 -0.12 6.01 16 10 C -0.30 -14.95 9.90 22.84 0.23 -14.72 16 11 C 0.11 5.50 11.15 84.50 0.94 6.44 16 12 N -0.58 -29.85 7.85 -193.53 -1.52 -31.37 16 13 C 0.33 16.24 7.42 132.75 0.98 17.23 16 14 N -0.65 -25.01 5.22 -308.65 -1.61 -26.62 16 15 C 0.50 18.15 7.10 87.66 0.62 18.77 16 16 O -0.52 -23.42 14.03 -3.04 -0.04 -23.46 16 17 C -0.09 -2.22 2.37 -11.65 -0.03 -2.25 16 18 H 0.12 2.63 8.05 -2.39 -0.02 2.61 16 19 C -0.11 -2.41 4.38 30.32 0.13 -2.28 16 20 C -0.11 -1.64 5.75 30.49 0.18 -1.46 16 21 C -0.08 -1.11 6.45 72.02 0.46 -0.65 16 22 S -0.27 -5.35 22.33 -56.49 -1.26 -6.61 16 23 C -0.07 -1.54 5.66 72.01 0.41 -1.13 16 24 C -0.26 -13.43 8.62 22.98 0.20 -13.23 16 25 H 0.29 12.71 8.29 -92.71 -0.77 11.94 16 26 H 0.12 5.24 8.06 -2.91 -0.02 5.21 16 27 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 28 H 0.42 13.30 8.23 -92.71 -0.76 12.53 16 29 H 0.06 1.46 8.08 -2.39 -0.02 1.44 16 30 H 0.07 1.77 7.70 -2.39 -0.02 1.75 16 31 H 0.08 1.18 8.05 -2.39 -0.02 1.16 16 32 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.13 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.11 2.41 7.60 -2.39 -0.02 2.39 16 36 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 37 H 0.12 6.28 6.20 -2.91 -0.02 6.26 16 Total: -1.00 -66.11 318.78 2.83 -63.28 By element: Atomic # 1 Polarization: 35.60 SS G_CDS: 0.33 Total: 35.92 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 4.66 Total: -9.71 kcal Atomic # 7 Polarization: -94.09 SS G_CDS: -2.89 Total: -96.98 kcal Atomic # 8 Polarization: -23.42 SS G_CDS: -0.04 Total: -23.46 kcal Atomic # 14 Polarization: 35.53 SS G_CDS: 2.03 Total: 37.56 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -1.26 Total: -6.61 kcal Total: -66.11 2.83 -63.28 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187927.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.657 kcal (2) G-P(sol) polarization free energy of solvation -66.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds