Wall clock time and date at job start Tue Mar 31 2020 06:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48497 * 109.46977 * 239.99850 * 3 2 1 5 5 H 1.48504 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99707 * 3 2 1 7 7 C 1.40038 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00137 * 196.41476 * 7 2 1 9 9 C 1.41546 * 119.99714 * 16.41611 * 7 2 1 10 10 C 1.41179 * 120.99423 * 203.77795 * 9 7 2 11 11 C 1.37583 * 119.01457 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.10845 * 0.02594 * 11 10 9 13 13 C 1.32465 * 122.23553 * 359.97136 * 12 11 10 14 14 N 1.39472 * 119.58488 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99499 * 5.21476 * 14 13 12 16 16 O 1.21276 * 120.00278 * 355.10804 * 15 14 13 17 17 C 1.50698 * 119.99793 * 175.11005 * 15 14 13 18 18 H 1.09005 * 109.38872 * 59.79929 * 17 15 14 19 19 C 1.52582 * 109.31038 * 179.55098 * 17 15 14 20 20 C 1.52581 * 110.72639 * 190.77528 * 19 17 15 21 21 C 1.53101 * 109.95527 * 289.32597 * 20 19 17 22 22 S 1.81743 * 108.84245 * 63.02693 * 21 20 19 23 23 C 1.53091 * 109.39242 * 300.00065 * 17 15 14 24 24 C 1.38598 * 120.83703 * 0.27920 * 13 12 11 25 25 H 0.96997 * 120.00386 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.49083 * 0.04159 * 10 9 7 27 27 H 1.07993 * 119.44423 * 179.97438 * 11 10 9 28 28 H 0.96993 * 120.00050 * 185.21244 * 14 13 12 29 29 H 1.09001 * 109.22721 * 70.45383 * 19 17 15 30 30 H 1.08999 * 109.22782 * 311.09654 * 19 17 15 31 31 H 1.09000 * 109.39423 * 169.17975 * 20 19 17 32 32 H 1.08996 * 109.39040 * 49.47573 * 20 19 17 33 33 H 1.09003 * 109.57328 * 182.83212 * 21 20 19 34 34 H 1.09002 * 109.57372 * 303.21521 * 21 20 19 35 35 H 1.09003 * 109.58050 * 57.11750 * 23 17 15 36 36 H 1.08999 * 109.68009 * 296.79853 * 23 17 15 37 37 H 1.08003 * 120.60029 * 179.72811 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0545 -1.2317 0.2648 9 6 1.3431 -2.4137 -0.3454 10 6 1.8219 -3.6643 0.1018 11 6 1.1445 -4.8061 -0.2592 12 7 0.0614 -4.7475 -1.0128 13 6 -0.4285 -3.6001 -1.4579 14 7 -1.5764 -3.6025 -2.2500 15 6 -2.2400 -4.7545 -2.4713 16 8 -1.7913 -5.8021 -2.0564 17 6 -3.5395 -4.7410 -3.2342 18 1 -3.3695 -4.3350 -4.2314 19 6 -4.0707 -6.1666 -3.3514 20 6 -5.2348 -6.2299 -4.3358 21 6 -6.4642 -5.5422 -3.7361 22 16 -6.0837 -3.7847 -3.4729 23 6 -4.5539 -3.8645 -2.4949 24 6 0.1883 -2.3975 -1.1508 25 1 -0.4850 0.8400 -0.0004 26 1 2.7066 -3.7237 0.7183 27 1 1.5049 -5.7664 0.0786 28 1 -1.8972 -2.7751 -2.6416 29 1 -4.4098 -6.5049 -2.3723 30 1 -3.2707 -6.8203 -3.6990 31 1 -5.4715 -7.2721 -4.5498 32 1 -4.9540 -5.7267 -5.2610 33 1 -7.3057 -5.6349 -4.4228 34 1 -6.7149 -6.0084 -2.7832 35 1 -4.1472 -2.8609 -2.3704 36 1 -4.7677 -4.2957 -1.5169 37 1 -0.2119 -1.4645 -1.5194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335187928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:22 Heat of formation + Delta-G solvation = -13.994652 kcal Electronic energy + Delta-G solvation = -20656.059305 eV Core-core repulsion = 17523.790356 eV Total energy + Delta-G solvation = -3132.268949 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.93741 -38.13256 -36.20650 -34.37821 -33.81874 -31.92162 -30.56280 -28.55630 -27.34426 -26.03532 -24.27360 -22.14043 -21.91892 -20.66490 -19.49802 -17.73665 -17.48943 -16.30604 -15.79421 -15.52820 -15.18890 -14.82801 -14.24948 -14.22921 -14.07075 -13.71721 -13.52444 -13.24702 -12.94074 -12.76529 -12.63033 -12.24328 -11.64422 -11.51135 -11.45535 -11.25050 -11.13327 -10.97661 -10.90463 -10.33970 -10.20992 -9.95848 -9.78960 -9.38688 -9.30504 -8.04419 -7.87574 -7.74039 -7.07857 -6.85070 -4.65272 1.58067 2.26666 2.53592 2.76904 2.98750 3.01346 3.16746 3.40452 3.56578 3.81808 4.50409 4.53942 4.61561 4.66147 4.74580 4.94467 5.08842 5.25412 5.32108 5.50900 5.53815 5.64020 5.69556 5.74275 5.97849 6.00297 6.16396 6.54130 6.60672 6.77038 6.90606 7.06350 7.34782 7.41395 7.72229 7.88449 8.16629 8.37740 8.65771 8.70434 8.82482 9.64673 10.02594 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.003918 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.284556 B = 7144.179700 C = 8271.946970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.079 3.921 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.277 1.277 6 H -0.264 1.264 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.144 3.856 10 C -0.285 4.285 11 C 0.119 3.881 12 N -0.555 5.555 13 C 0.335 3.665 14 N -0.657 5.657 15 C 0.505 3.495 16 O -0.477 6.477 17 C -0.107 4.107 18 H 0.106 0.894 19 C -0.111 4.111 20 C -0.120 4.120 21 C -0.084 4.084 22 S -0.262 6.262 23 C -0.072 4.072 24 C -0.243 4.243 25 H 0.283 0.717 26 H 0.102 0.898 27 H 0.123 0.877 28 H 0.407 0.593 29 H 0.070 0.930 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.330 -3.980 -7.374 13.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.413 5.413 2 C -0.141 4.141 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.136 3.864 10 C -0.308 4.308 11 C -0.035 4.035 12 N -0.275 5.275 13 C 0.111 3.889 14 N -0.302 5.302 15 C 0.287 3.713 16 O -0.347 6.347 17 C -0.130 4.130 18 H 0.124 0.876 19 C -0.149 4.149 20 C -0.159 4.159 21 C -0.233 4.233 22 S -0.034 6.034 23 C -0.221 4.221 24 C -0.269 4.269 25 H 0.094 0.906 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.242 0.758 29 H 0.089 0.911 30 H 0.103 0.897 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.102 0.898 35 H 0.129 0.871 36 H 0.109 0.891 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -11.320 -4.502 -7.648 14.384 hybrid contribution 1.239 1.117 0.601 1.773 sum -10.080 -3.385 -7.047 12.757 Atomic orbital electron populations 1.69758 1.07705 1.29577 1.34229 1.25957 0.94773 1.01497 0.91825 0.86304 0.80146 0.79813 0.80150 1.18682 1.20205 1.18846 1.19561 0.97764 0.90667 1.40705 0.89977 1.17555 0.89864 0.92262 0.86760 1.21897 1.05191 0.93922 1.09833 1.21754 0.90913 0.96805 0.94068 1.67206 1.15479 1.26615 1.18178 1.18189 0.87197 0.90850 0.92664 1.43462 1.25992 1.10736 1.50057 1.20459 0.85418 0.84322 0.81107 1.90778 1.66776 1.29932 1.47204 1.21578 0.92873 0.97968 1.00586 0.87630 1.21342 0.98209 0.94933 1.00383 1.21750 0.93649 1.01232 0.99286 1.23502 1.01280 0.93934 1.04536 1.86890 1.33131 1.11691 1.71726 1.23442 0.94075 1.04126 1.00419 1.21544 1.02504 0.95511 1.07322 0.90605 0.87982 0.85905 0.75806 0.91126 0.89702 0.90477 0.90509 0.87838 0.89757 0.87084 0.89121 0.85452 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.13 10.91 55.55 0.61 -18.53 16 2 C 0.08 1.88 5.21 -17.34 -0.09 1.79 16 3 Si 0.91 17.69 29.59 -169.99 -5.03 12.66 16 4 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 5 H -0.28 -5.23 7.11 56.52 0.40 -4.83 16 6 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 7 C -0.46 -11.60 9.12 -37.65 -0.34 -11.94 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 9 C 0.14 3.75 5.60 -106.55 -0.60 3.15 16 10 C -0.28 -6.94 9.90 -38.70 -0.38 -7.32 16 11 C 0.12 2.84 11.15 -17.68 -0.20 2.64 16 12 N -0.56 -14.02 7.85 -12.53 -0.10 -14.12 16 13 C 0.34 8.01 7.42 -154.70 -1.15 6.86 16 14 N -0.66 -12.47 5.22 -11.49 -0.06 -12.53 16 15 C 0.50 9.08 7.10 -10.99 -0.08 9.00 16 16 O -0.48 -10.56 14.02 5.56 0.08 -10.48 16 17 C -0.11 -1.36 2.37 -91.94 -0.22 -1.58 16 18 H 0.11 1.20 8.06 -51.93 -0.42 0.78 16 19 C -0.11 -1.30 4.37 -27.16 -0.12 -1.42 16 20 C -0.12 -1.06 5.75 -26.89 -0.15 -1.21 16 21 C -0.08 -0.74 6.45 37.21 0.24 -0.50 16 22 S -0.26 -2.91 22.33 -107.50 -2.40 -5.31 16 23 C -0.07 -0.86 5.66 37.20 0.21 -0.65 16 24 C -0.24 -6.08 8.62 -38.48 -0.33 -6.42 16 25 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 26 H 0.10 2.28 8.06 -52.49 -0.42 1.86 16 27 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 28 H 0.41 6.38 8.24 -40.82 -0.34 6.04 16 29 H 0.07 0.88 8.08 -51.93 -0.42 0.46 16 30 H 0.08 1.10 7.70 -51.93 -0.40 0.70 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 33 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.11 1.30 7.60 -51.93 -0.39 0.91 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.13 3.15 6.20 -52.48 -0.33 2.83 16 LS Contribution 318.77 15.07 4.80 4.80 Total: -1.00 -30.25 318.77 -10.11 -40.36 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -4.80 Total: 10.76 kcal Atomic # 6 Polarization: -4.40 SS G_CDS: -3.21 Total: -7.61 kcal Atomic # 7 Polarization: -45.63 SS G_CDS: 0.45 Total: -45.18 kcal Atomic # 8 Polarization: -10.56 SS G_CDS: 0.08 Total: -10.48 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.66 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -2.40 Total: -5.31 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -30.25 -10.11 -40.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.365 kcal (2) G-P(sol) polarization free energy of solvation -30.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds