Wall clock time and date at job start Tue Mar 31 2020 06:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30736 * 1 3 3 Si 1.86800 * 120.00110 * 2 1 4 4 H 1.48497 * 109.46977 * 239.99850 * 3 2 1 5 5 H 1.48504 * 109.46794 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47155 * 119.99707 * 3 2 1 7 7 C 1.40038 * 120.00070 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00137 * 196.41476 * 7 2 1 9 9 C 1.41546 * 119.99714 * 16.41611 * 7 2 1 10 10 C 1.41179 * 120.99423 * 203.77795 * 9 7 2 11 11 C 1.37583 * 119.01457 * 180.02562 * 10 9 7 12 12 N 1.32079 * 121.10845 * 0.02594 * 11 10 9 13 13 C 1.32465 * 122.23553 * 359.97136 * 12 11 10 14 14 N 1.39472 * 119.58488 * 180.02562 * 13 12 11 15 15 C 1.34779 * 119.99499 * 5.21476 * 14 13 12 16 16 O 1.21276 * 120.00278 * 355.10804 * 15 14 13 17 17 C 1.50698 * 119.99793 * 175.11005 * 15 14 13 18 18 H 1.09005 * 109.38872 * 59.79929 * 17 15 14 19 19 C 1.52582 * 109.31038 * 179.55098 * 17 15 14 20 20 C 1.52581 * 110.72639 * 190.77528 * 19 17 15 21 21 C 1.53101 * 109.95527 * 289.32597 * 20 19 17 22 22 S 1.81743 * 108.84245 * 63.02693 * 21 20 19 23 23 C 1.53091 * 109.39242 * 300.00065 * 17 15 14 24 24 C 1.38598 * 120.83703 * 0.27920 * 13 12 11 25 25 H 0.96997 * 120.00386 * 0.02562 * 1 2 3 26 26 H 1.07998 * 120.49083 * 0.04159 * 10 9 7 27 27 H 1.07993 * 119.44423 * 179.97438 * 11 10 9 28 28 H 0.96993 * 120.00050 * 185.21244 * 14 13 12 29 29 H 1.09001 * 109.22721 * 70.45383 * 19 17 15 30 30 H 1.08999 * 109.22782 * 311.09654 * 19 17 15 31 31 H 1.09000 * 109.39423 * 169.17975 * 20 19 17 32 32 H 1.08996 * 109.39040 * 49.47573 * 20 19 17 33 33 H 1.09003 * 109.57328 * 182.83212 * 21 20 19 34 34 H 1.09002 * 109.57372 * 303.21521 * 21 20 19 35 35 H 1.09003 * 109.58050 * 57.11750 * 23 17 15 36 36 H 1.08999 * 109.68009 * 296.79853 * 23 17 15 37 37 H 1.08003 * 120.60029 * 179.72811 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6963 -1.2125 5 1 1.2763 2.7464 -0.0006 6 1 3.0951 1.6964 1.2125 7 6 2.0076 -1.2128 0.0005 8 1 3.0545 -1.2317 0.2648 9 6 1.3431 -2.4137 -0.3454 10 6 1.8219 -3.6643 0.1018 11 6 1.1445 -4.8061 -0.2592 12 7 0.0614 -4.7475 -1.0128 13 6 -0.4285 -3.6001 -1.4579 14 7 -1.5764 -3.6025 -2.2500 15 6 -2.2400 -4.7545 -2.4713 16 8 -1.7913 -5.8021 -2.0564 17 6 -3.5395 -4.7410 -3.2342 18 1 -3.3695 -4.3350 -4.2314 19 6 -4.0707 -6.1666 -3.3514 20 6 -5.2348 -6.2299 -4.3358 21 6 -6.4642 -5.5422 -3.7361 22 16 -6.0837 -3.7847 -3.4729 23 6 -4.5539 -3.8645 -2.4949 24 6 0.1883 -2.3975 -1.1508 25 1 -0.4850 0.8400 -0.0004 26 1 2.7066 -3.7237 0.7183 27 1 1.5049 -5.7664 0.0786 28 1 -1.8972 -2.7751 -2.6416 29 1 -4.4098 -6.5049 -2.3723 30 1 -3.2707 -6.8203 -3.6990 31 1 -5.4715 -7.2721 -4.5498 32 1 -4.9540 -5.7267 -5.2610 33 1 -7.3057 -5.6349 -4.4228 34 1 -6.7149 -6.0084 -2.7832 35 1 -4.1472 -2.8609 -2.3704 36 1 -4.7677 -4.2957 -1.5169 37 1 -0.2119 -1.4645 -1.5194 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000335187928.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:21 Heat of formation + Delta-G solvation = -30.599174 kcal Electronic energy + Delta-G solvation = -20656.779331 eV Core-core repulsion = 17523.790356 eV Total energy + Delta-G solvation = -3132.988975 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.47414 -39.82796 -37.31167 -36.13543 -35.54724 -32.94644 -32.42036 -30.28936 -28.24594 -27.92710 -25.47707 -23.86949 -23.32699 -21.97959 -20.92964 -19.48409 -18.79750 -17.63206 -17.34361 -16.97335 -16.54846 -16.09105 -15.88770 -15.71555 -15.35709 -15.17917 -14.66807 -14.55401 -14.33868 -14.12148 -13.92302 -13.73327 -13.20564 -12.93488 -12.67908 -12.58102 -12.43378 -12.08857 -12.00294 -11.96199 -11.86883 -11.50889 -11.15817 -11.02268 -10.62821 -9.96781 -9.61399 -8.89525 -8.72531 -8.66141 -6.58214 0.65757 0.76073 0.98974 1.40741 1.42381 1.51696 1.57064 1.86532 2.11784 2.19337 2.78950 3.52970 3.55387 3.57781 3.74102 3.87524 4.04229 4.09792 4.28789 4.32765 4.50275 4.60646 4.72662 4.79054 4.82693 4.84342 4.90875 5.02145 5.05911 5.11146 5.20546 5.28736 5.46429 5.61949 5.88670 6.11594 6.43980 6.57169 6.77677 6.81288 7.25265 7.80995 8.24518 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.003918 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.284556 B = 7144.179700 C = 8271.946970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.810 5.810 2 C 0.042 3.958 3 Si 0.987 3.013 4 H -0.259 1.259 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.486 4.486 8 H 0.084 0.916 9 C 0.115 3.885 10 C -0.299 4.299 11 C 0.113 3.887 12 N -0.579 5.579 13 C 0.333 3.667 14 N -0.651 5.651 15 C 0.503 3.497 16 O -0.520 6.520 17 C -0.090 4.090 18 H 0.127 0.873 19 C -0.109 4.109 20 C -0.111 4.111 21 C -0.079 4.079 22 S -0.272 6.272 23 C -0.070 4.070 24 C -0.261 4.261 25 H 0.293 0.707 26 H 0.115 0.885 27 H 0.149 0.851 28 H 0.421 0.579 29 H 0.059 0.941 30 H 0.071 0.929 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.127 0.873 34 H 0.087 0.913 35 H 0.111 0.889 36 H 0.080 0.920 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.473 -3.282 -8.437 14.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.176 4.176 3 Si 0.807 3.193 4 H -0.184 1.184 5 H -0.189 1.189 6 H -0.184 1.184 7 C -0.516 4.516 8 H 0.102 0.898 9 C 0.107 3.893 10 C -0.323 4.323 11 C -0.040 4.040 12 N -0.299 5.299 13 C 0.107 3.893 14 N -0.298 5.298 15 C 0.288 3.712 16 O -0.393 6.393 17 C -0.113 4.113 18 H 0.145 0.855 19 C -0.147 4.147 20 C -0.150 4.150 21 C -0.227 4.227 22 S -0.044 6.044 23 C -0.219 4.219 24 C -0.287 4.287 25 H 0.104 0.896 26 H 0.133 0.867 27 H 0.167 0.833 28 H 0.259 0.741 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.103 0.897 33 H 0.145 0.855 34 H 0.106 0.894 35 H 0.129 0.871 36 H 0.099 0.901 37 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -12.498 -3.800 -8.728 15.710 hybrid contribution 1.533 0.845 0.942 1.988 sum -10.964 -2.955 -7.786 13.768 Atomic orbital electron populations 1.69791 1.09050 1.31148 1.33567 1.26807 0.95550 1.04538 0.90712 0.85180 0.78791 0.75218 0.80138 1.18374 1.18932 1.18429 1.19865 0.98153 0.91665 1.41946 0.89783 1.17988 0.90686 0.93284 0.87377 1.22081 1.05961 0.93782 1.10503 1.22206 0.90519 0.97868 0.93454 1.67340 1.16246 1.27209 1.19133 1.18449 0.88115 0.90269 0.92464 1.43516 1.24762 1.12142 1.49351 1.21403 0.86430 0.83090 0.80277 1.90751 1.68173 1.31331 1.49007 1.21558 0.89888 0.99339 1.00519 0.85541 1.21345 0.99010 0.93586 1.00768 1.21703 0.92138 1.02751 0.98392 1.23622 1.01932 0.91738 1.05379 1.86967 1.31976 1.14275 1.71197 1.23328 0.94656 1.03781 1.00104 1.21533 1.03085 0.95772 1.08268 0.89594 0.86676 0.83328 0.74113 0.92258 0.91075 0.88332 0.89723 0.85521 0.89407 0.87075 0.90150 0.85794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.40 10.91 21.84 0.24 -39.17 16 2 C 0.04 1.97 5.21 85.29 0.44 2.41 16 3 Si 0.99 35.57 29.59 68.60 2.03 37.60 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.49 16 5 H -0.27 -8.97 7.11 99.48 0.71 -8.27 16 6 H -0.26 -9.17 7.11 99.48 0.71 -8.46 16 7 C -0.49 -25.08 9.12 23.52 0.21 -24.86 16 8 H 0.08 4.15 7.90 -2.91 -0.02 4.12 16 9 C 0.11 6.13 5.60 -21.11 -0.12 6.01 16 10 C -0.30 -14.92 9.90 22.84 0.23 -14.69 16 11 C 0.11 5.49 11.15 84.50 0.94 6.43 16 12 N -0.58 -29.82 7.85 -193.55 -1.52 -31.34 16 13 C 0.33 16.23 7.42 132.75 0.98 17.22 16 14 N -0.65 -25.00 5.22 -308.66 -1.61 -26.61 16 15 C 0.50 18.18 7.10 87.66 0.62 18.80 16 16 O -0.52 -23.44 14.02 -3.02 -0.04 -23.48 16 17 C -0.09 -2.20 2.37 -11.65 -0.03 -2.23 16 18 H 0.13 2.61 8.06 -2.38 -0.02 2.60 16 19 C -0.11 -2.42 4.37 30.32 0.13 -2.29 16 20 C -0.11 -1.63 5.75 30.49 0.18 -1.45 16 21 C -0.08 -1.14 6.45 72.02 0.46 -0.68 16 22 S -0.27 -5.47 22.33 -56.49 -1.26 -6.73 16 23 C -0.07 -1.61 5.66 72.01 0.41 -1.20 16 24 C -0.26 -13.40 8.62 22.98 0.20 -13.20 16 25 H 0.29 12.75 8.29 -92.71 -0.77 11.98 16 26 H 0.12 5.24 8.06 -2.91 -0.02 5.22 16 27 H 0.15 6.20 8.06 -2.91 -0.02 6.18 16 28 H 0.42 13.24 8.24 -92.71 -0.76 12.47 16 29 H 0.06 1.44 8.08 -2.39 -0.02 1.43 16 30 H 0.07 1.79 7.70 -2.39 -0.02 1.77 16 31 H 0.10 1.10 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.17 8.06 -2.39 -0.02 1.15 16 33 H 0.13 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.11 2.53 7.60 -2.39 -0.02 2.51 16 36 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.12 6.30 6.20 -2.91 -0.02 6.28 16 Total: -1.00 -66.18 318.77 2.83 -63.36 By element: Atomic # 1 Polarization: 35.78 SS G_CDS: 0.33 Total: 36.11 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 4.67 Total: -9.74 kcal Atomic # 7 Polarization: -94.22 SS G_CDS: -2.89 Total: -97.11 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.04 Total: -23.48 kcal Atomic # 14 Polarization: 35.57 SS G_CDS: 2.03 Total: 37.60 kcal Atomic # 16 Polarization: -5.47 SS G_CDS: -1.26 Total: -6.73 kcal Total: -66.18 2.83 -63.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335187928.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.757 kcal (2) G-P(sol) polarization free energy of solvation -66.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds