Wall clock time and date at job start Tue Mar 31 2020 06:29:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38219 * 120.01278 * 2 1 4 4 C 1.38222 * 120.02353 * 179.72456 * 3 2 1 5 5 C 1.50697 * 119.97673 * 180.30075 * 4 3 2 6 6 H 1.09011 * 110.53173 * 23.08119 * 5 4 3 7 7 N 1.47305 * 110.60376 * 146.07619 * 5 4 3 8 8 C 1.34526 * 106.62315 * 118.52702 * 7 5 4 9 9 O 1.21541 * 123.77578 * 180.02562 * 8 7 5 10 10 N 1.33796 * 112.45068 * 0.02562 * 8 7 5 11 11 C 1.46510 * 124.17288 * 179.97438 * 10 8 7 12 12 C 1.50698 * 109.46863 * 270.03917 * 11 10 8 13 13 H 1.08000 * 120.00313 * 0.02562 * 12 11 10 14 14 C 1.37880 * 119.99654 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99954 * 179.97438 * 14 12 11 16 16 Si 1.86796 * 119.99914 * 0.02562 * 14 12 11 17 17 H 1.48498 * 109.47280 * 90.00132 * 16 14 12 18 18 H 1.48506 * 109.47068 * 210.00177 * 16 14 12 19 19 H 1.48501 * 109.47558 * 329.99518 * 16 14 12 20 20 C 1.34762 * 111.65032 * 0.02562 * 10 8 7 21 21 O 1.21237 * 127.15975 * 180.02562 * 20 10 8 22 22 C 1.38269 * 120.05037 * 0.54740 * 4 3 2 23 23 C 1.38172 * 120.02670 * 359.73245 * 22 4 3 24 24 C 1.38435 * 120.01209 * 180.27447 * 2 1 3 25 25 F 1.35106 * 120.02680 * 359.97438 * 24 2 1 26 26 H 1.09002 * 109.47152 * 269.72415 * 1 2 3 27 27 H 1.09001 * 109.46980 * 149.72515 * 1 2 3 28 28 H 1.09004 * 109.47113 * 29.72496 * 1 2 3 29 29 H 1.07998 * 119.98766 * 359.97438 * 3 2 1 30 30 H 0.97002 * 126.69398 * 298.51182 * 7 5 4 31 31 H 1.08998 * 109.46907 * 30.04181 * 11 10 8 32 32 H 1.09001 * 109.46795 * 150.03759 * 11 10 8 33 33 H 0.96998 * 119.99681 * 180.02562 * 15 14 12 34 34 H 1.08006 * 119.98414 * 179.74997 * 22 4 3 35 35 H 1.07997 * 120.01183 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5806 1.1971 0.0058 5 6 4.3333 2.5026 0.0126 6 1 3.7090 3.3018 0.4125 7 7 5.5802 2.3781 0.7870 8 6 6.5900 2.6218 -0.0678 9 8 7.7633 2.6000 0.2487 10 7 6.1583 2.8910 -1.3052 11 6 7.0389 3.1939 -2.4363 12 6 7.2798 4.6801 -2.5013 13 1 6.8231 5.3336 -1.7727 14 6 8.0833 5.2056 -3.4909 15 7 8.2932 6.5027 -3.5479 16 14 8.8726 4.0754 -4.7514 17 1 7.9640 3.9214 -5.9158 18 1 10.1608 4.6603 -5.2027 19 1 9.1207 2.7460 -4.1378 20 6 4.8135 2.8501 -1.3826 21 8 4.1300 3.0482 -2.3641 22 6 4.2733 0.0004 0.0001 23 6 3.5843 -1.1972 -0.0058 24 6 2.1995 -1.1987 -0.0057 25 9 1.5247 -2.3692 -0.0108 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 -0.8875 -0.5181 28 1 -0.3633 0.8925 -0.5096 29 1 1.6584 2.1322 -0.0004 30 1 5.6580 2.1625 1.7295 31 1 7.9895 2.6771 -2.3052 32 1 6.5690 2.8612 -3.3618 33 1 8.8581 6.8723 -4.2443 34 1 5.3533 0.0019 0.0005 35 1 4.1255 -2.1318 -0.0106 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336082245.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:12 Heat of formation + Delta-G solvation = -84.248147 kcal Electronic energy + Delta-G solvation = -22889.764458 eV Core-core repulsion = 19188.235913 eV Total energy + Delta-G solvation = -3701.528545 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.95598 -43.45819 -40.25247 -39.53311 -37.21273 -36.38459 -34.60726 -33.73803 -32.24251 -30.48996 -28.10097 -27.73926 -25.19136 -24.07143 -23.63043 -21.94744 -21.35335 -19.39756 -19.01967 -18.62283 -18.06020 -17.77146 -17.27665 -16.78856 -16.72655 -16.34866 -16.15453 -15.69374 -15.30591 -15.11562 -14.90065 -14.60093 -14.34364 -14.24164 -14.07065 -13.95708 -13.50938 -13.26560 -13.01148 -12.76603 -12.58906 -12.33679 -12.03687 -11.94030 -11.81245 -11.28865 -10.88329 -10.74176 -10.45832 -9.95137 -9.60151 -8.40274 -6.49137 -0.09858 0.18166 0.61704 1.29831 1.34409 1.39987 1.46721 2.05460 2.15490 2.27388 2.43247 2.93230 3.09248 3.21103 3.34396 3.62171 3.78411 3.96282 4.16263 4.28483 4.32402 4.51717 4.58530 4.70082 4.76477 4.79786 4.86295 4.94906 5.09036 5.19682 5.26491 5.27411 5.33093 5.81478 5.83801 6.04711 6.21568 6.44574 6.50489 7.10059 7.20187 8.76274 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025392 B = 0.004054 C = 0.003976 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.465409 B = 6904.936637 C = 7040.889788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.120 4.120 3 C -0.061 4.061 4 C -0.106 4.106 5 C 0.155 3.845 6 H 0.171 0.829 7 N -0.699 5.699 8 C 0.700 3.300 9 O -0.578 6.578 10 N -0.569 5.569 11 C 0.228 3.772 12 C -0.551 4.551 13 H 0.033 0.967 14 C 0.020 3.980 15 N -0.936 5.936 16 Si 0.945 3.055 17 H -0.258 1.258 18 H -0.273 1.273 19 H -0.245 1.245 20 C 0.519 3.481 21 O -0.494 6.494 22 C -0.082 4.082 23 C -0.150 4.150 24 C 0.090 3.910 25 F -0.142 7.142 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.164 0.836 30 H 0.454 0.546 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.273 0.727 34 H 0.128 0.872 35 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.615 -15.989 10.111 24.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.121 4.121 3 C -0.080 4.080 4 C -0.108 4.108 5 C 0.046 3.954 6 H 0.188 0.812 7 N -0.365 5.365 8 C 0.401 3.599 9 O -0.454 6.454 10 N -0.312 5.312 11 C 0.108 3.892 12 C -0.589 4.589 13 H 0.051 0.949 14 C -0.180 4.180 15 N -0.575 5.575 16 Si 0.766 3.234 17 H -0.183 1.183 18 H -0.198 1.198 19 H -0.168 1.168 20 C 0.307 3.693 21 O -0.366 6.366 22 C -0.101 4.101 23 C -0.168 4.168 24 C 0.071 3.929 25 F -0.120 7.120 26 H 0.108 0.892 27 H 0.086 0.914 28 H 0.107 0.893 29 H 0.182 0.818 30 H 0.302 0.698 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.146 0.854 35 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -15.237 -15.767 9.561 23.920 hybrid contribution 0.775 -0.104 -0.322 0.846 sum -14.462 -15.871 9.238 23.375 Atomic orbital electron populations 1.20814 0.88140 1.04162 1.03957 1.20176 0.98494 0.91173 1.02208 1.21012 0.92017 0.98818 0.96119 1.19455 0.94201 0.92273 1.04876 1.20862 0.87723 0.99044 0.87744 0.81171 1.45320 1.03620 1.75046 1.12558 1.16019 0.85498 0.77376 0.81055 1.90948 1.17232 1.58034 1.79200 1.46470 1.09756 1.63142 1.11848 1.19589 0.90066 0.95822 0.83772 1.21306 1.31526 0.91418 1.14636 0.94880 1.25790 0.95915 0.96792 0.99510 1.70017 1.38968 1.13334 1.35179 0.85756 0.78652 0.79786 0.79175 1.18296 1.19819 1.16828 1.21309 0.81700 0.74910 0.91396 1.90736 1.61036 1.47239 1.37557 1.20878 1.00481 0.91161 0.97569 1.21227 0.92291 1.00063 1.03238 1.17816 0.90302 0.81268 1.03491 1.91476 1.80426 1.46230 1.93880 0.89236 0.91431 0.89299 0.81807 0.69757 0.93092 0.93005 0.91817 0.85387 0.83096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.34 9.84 71.24 0.70 -0.63 16 2 C -0.12 -1.98 5.89 -19.82 -0.12 -2.10 16 3 C -0.06 -1.00 9.35 22.26 0.21 -0.79 16 4 C -0.11 -2.10 5.08 -19.86 -0.10 -2.20 16 5 C 0.15 3.55 3.89 43.63 0.17 3.72 16 6 H 0.17 2.73 8.07 -2.38 -0.02 2.71 16 7 N -0.70 -16.98 5.34 -463.20 -2.47 -19.45 16 8 C 0.70 26.34 8.62 179.44 1.55 27.88 16 9 O -0.58 -26.35 17.48 -3.84 -0.07 -26.42 16 10 N -0.57 -23.71 2.59 -777.19 -2.01 -25.72 16 11 C 0.23 11.23 4.52 85.63 0.39 11.61 16 12 C -0.55 -32.51 9.94 25.60 0.25 -32.25 16 13 H 0.03 2.17 8.06 -2.91 -0.02 2.15 16 14 C 0.02 1.15 5.47 84.66 0.46 1.61 16 15 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 16 Si 0.94 43.51 27.47 68.60 1.88 45.40 16 17 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 18 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 19 H -0.24 -10.48 6.54 99.48 0.65 -9.83 16 20 C 0.52 18.66 7.63 87.94 0.67 19.33 16 21 O -0.49 -20.55 17.76 -2.90 -0.05 -20.60 16 22 C -0.08 -1.67 9.35 22.26 0.21 -1.46 16 23 C -0.15 -2.78 10.03 22.31 0.22 -2.56 16 24 C 0.09 1.72 7.24 22.37 0.16 1.88 16 25 F -0.14 -2.82 16.48 44.97 0.74 -2.08 16 26 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.07 0.84 7.64 -2.39 -0.02 0.82 16 28 H 0.09 0.82 8.08 -2.38 -0.02 0.80 16 29 H 0.16 1.83 8.06 -2.91 -0.02 1.81 16 30 H 0.45 7.74 8.96 -92.71 -0.83 6.91 16 31 H 0.05 2.51 6.92 -2.39 -0.02 2.49 16 32 H 0.05 2.47 7.43 -2.39 -0.02 2.45 16 33 H 0.27 15.73 8.31 -92.71 -0.77 14.96 16 34 H 0.13 2.71 7.57 -2.91 -0.02 2.68 16 35 H 0.15 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -77.49 313.98 3.36 -74.13 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: 0.26 Total: 8.91 kcal Atomic # 6 Polarization: 19.27 SS G_CDS: 4.78 Total: 24.05 kcal Atomic # 7 Polarization: -99.21 SS G_CDS: -4.19 Total: -103.39 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: -0.12 Total: -47.02 kcal Atomic # 9 Polarization: -2.82 SS G_CDS: 0.74 Total: -2.08 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 1.88 Total: 45.40 kcal Total: -77.49 3.36 -74.13 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336082245.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.122 kcal (2) G-P(sol) polarization free energy of solvation -77.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds