Wall clock time and date at job start Tue Mar 31 2020 06:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38217 * 120.01470 * 2 1 4 4 C 1.38231 * 120.02599 * 180.27079 * 3 2 1 5 5 C 1.50696 * 119.97482 * 179.72251 * 4 3 2 6 6 H 1.08996 * 110.65480 * 341.18502 * 5 4 3 7 7 N 1.47316 * 110.59916 * 218.27268 * 5 4 3 8 8 C 1.34524 * 106.61733 * 241.47620 * 7 5 4 9 9 O 1.21545 * 123.76626 * 180.02562 * 8 7 5 10 10 N 1.33786 * 112.46391 * 359.97438 * 8 7 5 11 11 C 1.46496 * 124.18215 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47287 * 89.97583 * 11 10 8 13 13 H 1.07997 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00268 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99864 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00290 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47065 * 90.00099 * 16 14 12 18 18 H 1.48501 * 109.47423 * 209.99928 * 16 14 12 19 19 H 1.48494 * 109.47238 * 330.00231 * 16 14 12 20 20 C 1.34778 * 111.64065 * 0.02562 * 10 8 7 21 21 O 1.21234 * 127.15287 * 180.02562 * 20 10 8 22 22 C 1.38269 * 120.04877 * 359.45079 * 4 3 2 23 23 C 1.38180 * 120.02383 * 0.27504 * 22 4 3 24 24 C 1.38447 * 120.01252 * 179.71918 * 2 1 3 25 25 F 1.35101 * 120.02047 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46986 * 270.28110 * 1 2 3 27 27 H 1.09001 * 109.46956 * 30.27296 * 1 2 3 28 28 H 1.08992 * 109.47366 * 150.27621 * 1 2 3 29 29 H 1.08001 * 119.99015 * 0.02562 * 3 2 1 30 30 H 0.97004 * 126.68848 * 61.51054 * 7 5 4 31 31 H 1.08997 * 109.47120 * 209.97744 * 11 10 8 32 32 H 1.09004 * 109.47031 * 329.97169 * 11 10 8 33 33 H 0.96993 * 119.99865 * 180.02562 * 15 14 12 34 34 H 1.07994 * 119.98761 * 180.24965 * 22 4 3 35 35 H 1.08002 * 120.00851 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1971 -0.0057 5 6 4.3333 2.5026 -0.0120 6 1 3.6876 3.3171 -0.3403 7 7 5.5266 2.4089 -0.8708 8 6 6.5906 2.6206 -0.0754 9 8 7.7405 2.6128 -0.4691 10 7 6.2417 2.8419 1.1971 11 6 7.1950 3.1021 2.2786 12 6 7.4418 4.5849 2.3847 13 1 6.9386 5.2654 1.7139 14 6 8.3101 5.0728 3.3381 15 7 8.9233 4.2439 4.1547 16 14 8.6167 6.9107 3.4691 17 1 7.6380 7.5098 4.4118 18 1 9.9947 7.1484 3.9690 19 1 8.4610 7.5352 2.1309 20 6 4.9047 2.7958 1.3611 21 8 4.2875 2.9562 2.3922 22 6 4.2733 0.0004 0.0002 23 6 3.5842 -1.1973 0.0059 24 6 2.1995 -1.1988 0.0059 25 9 1.5247 -2.3692 0.0121 26 1 -0.3633 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6585 2.1322 0.0004 30 1 5.5419 2.2298 -1.8240 31 1 6.7864 2.7335 3.2195 32 1 8.1343 2.5916 2.0656 33 1 9.5339 4.5872 4.8256 34 1 5.3533 0.0018 -0.0002 35 1 4.1255 -2.1319 0.0100 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336082246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:14 Heat of formation + Delta-G solvation = -65.974652 kcal Electronic energy + Delta-G solvation = -22838.902505 eV Core-core repulsion = 19138.166358 eV Total energy + Delta-G solvation = -3700.736147 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.10368 -41.94953 -39.29732 -37.91505 -35.68822 -34.63040 -33.05087 -32.48433 -31.18918 -27.94367 -27.29249 -26.52547 -23.57714 -22.89944 -22.49426 -20.89295 -19.85226 -17.79619 -17.58709 -17.18326 -16.74300 -16.21202 -15.92000 -15.86547 -15.03354 -14.86856 -14.80976 -14.27431 -13.93907 -13.79107 -13.64952 -13.57032 -13.41867 -13.14683 -12.66789 -12.33481 -12.16058 -11.95523 -11.57357 -11.24060 -11.15301 -10.78617 -10.53766 -10.12289 -9.96740 -9.70243 -9.35196 -9.14508 -8.71643 -8.61293 -8.53586 -6.16715 -4.22236 0.80175 0.98862 2.13054 2.84611 3.28042 3.30248 3.33322 3.37110 3.53536 3.70415 4.01551 4.27623 4.37142 4.41929 4.52850 4.58091 4.90608 4.95041 5.15598 5.19660 5.29058 5.33396 5.51913 5.67043 5.79044 5.83577 5.94556 6.02378 6.19934 6.51963 6.63061 6.97984 7.08488 7.17414 7.75760 7.87586 7.98832 8.00907 8.66066 8.81562 9.42850 10.92721 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.003855 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.921911 B = 7260.734095 C = 7491.518777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.120 4.120 3 C -0.067 4.067 4 C -0.097 4.097 5 C 0.133 3.867 6 H 0.129 0.871 7 N -0.734 5.734 8 C 0.699 3.301 9 O -0.536 6.536 10 N -0.555 5.555 11 C 0.249 3.751 12 C -0.536 4.536 13 H 0.060 0.940 14 C 0.066 3.934 15 N -0.890 5.890 16 Si 0.905 3.095 17 H -0.278 1.278 18 H -0.283 1.283 19 H -0.273 1.273 20 C 0.526 3.474 21 O -0.465 6.465 22 C -0.072 4.072 23 C -0.147 4.147 24 C 0.101 3.899 25 F -0.138 7.138 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.139 0.861 30 H 0.434 0.566 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.267 0.733 34 H 0.133 0.867 35 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.507 -8.857 -10.849 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.121 4.121 3 C -0.086 4.086 4 C -0.098 4.098 5 C 0.023 3.977 6 H 0.146 0.854 7 N -0.399 5.399 8 C 0.400 3.600 9 O -0.409 6.409 10 N -0.299 5.299 11 C 0.132 3.868 12 C -0.574 4.574 13 H 0.079 0.921 14 C -0.137 4.137 15 N -0.528 5.528 16 Si 0.732 3.268 17 H -0.204 1.204 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.311 3.689 21 O -0.335 6.335 22 C -0.091 4.091 23 C -0.166 4.166 24 C 0.082 3.918 25 F -0.117 7.117 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.157 0.843 30 H 0.277 0.723 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -14.989 -8.787 -10.199 20.147 hybrid contribution 0.173 0.698 -0.271 0.768 sum -14.816 -8.089 -10.470 19.864 Atomic orbital electron populations 1.20725 0.89879 1.03308 1.03063 1.19882 0.97145 0.91661 1.03397 1.20755 0.92656 0.97627 0.97536 1.19586 0.93613 0.93538 1.03097 1.20835 0.89084 0.96833 0.90907 0.85352 1.45592 1.05034 1.78215 1.11101 1.15998 0.85004 0.77527 0.81426 1.90977 1.18000 1.55489 1.76459 1.46835 1.09366 1.62942 1.10750 1.19630 0.86804 0.98032 0.82357 1.21238 1.27032 0.91149 1.17997 0.92149 1.24899 0.95077 0.98751 0.95016 1.69921 1.28548 1.34721 1.19643 0.86380 0.77605 0.84333 0.78469 1.20376 1.20883 1.19748 1.20402 0.83000 0.76068 0.89442 1.90757 1.65190 1.46226 1.31298 1.20868 1.00636 0.90776 0.96797 1.21098 0.92155 0.99738 1.03578 1.17585 0.90029 0.80939 1.03290 1.91479 1.80376 1.45994 1.93846 0.90586 0.90766 0.91235 0.84331 0.72279 0.92935 0.92706 0.92367 0.84884 0.84392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 9.83 36.01 0.35 -0.50 16 2 C -0.12 -1.20 5.89 -104.55 -0.62 -1.82 16 3 C -0.07 -0.67 9.34 -39.59 -0.37 -1.04 16 4 C -0.10 -1.13 5.07 -104.61 -0.53 -1.66 16 5 C 0.13 1.74 3.89 -69.36 -0.27 1.47 16 6 H 0.13 1.30 8.05 -51.93 -0.42 0.88 16 7 N -0.73 -9.86 5.50 -60.33 -0.33 -10.19 16 8 C 0.70 13.61 8.61 -88.03 -0.76 12.86 16 9 O -0.54 -12.43 17.48 5.33 0.09 -12.33 16 10 N -0.56 -11.91 2.59 -122.03 -0.32 -12.22 16 11 C 0.25 6.49 5.45 -5.20 -0.03 6.46 16 12 C -0.54 -15.14 9.39 -34.44 -0.32 -15.47 16 13 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 14 C 0.07 1.86 5.46 -17.82 -0.10 1.76 16 15 N -0.89 -26.03 13.29 55.43 0.74 -25.30 16 16 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.53 9.93 7.60 -10.55 -0.08 9.85 16 21 O -0.46 -10.07 17.76 5.60 0.10 -9.97 16 22 C -0.07 -0.85 9.31 -39.59 -0.37 -1.22 16 23 C -0.15 -1.60 10.03 -39.52 -0.40 -1.99 16 24 C 0.10 1.11 7.24 -39.42 -0.29 0.83 16 25 F -0.14 -1.56 16.48 2.25 0.04 -1.52 16 26 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.07 0.44 8.09 -51.93 -0.42 0.02 16 28 H 0.07 0.51 7.64 -51.93 -0.40 0.11 16 29 H 0.14 1.08 8.05 -52.49 -0.42 0.66 16 30 H 0.43 4.40 8.96 -40.82 -0.37 4.03 16 31 H 0.05 1.44 8.00 -51.93 -0.42 1.02 16 32 H 0.05 1.52 7.86 -51.93 -0.41 1.11 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.13 1.64 7.70 -52.49 -0.40 1.23 16 35 H 0.14 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 317.73 15.07 4.79 4.79 Total: -1.00 -33.39 317.73 -7.32 -40.71 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -3.64 Total: -0.14 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -3.77 Total: 9.53 kcal Atomic # 7 Polarization: -47.80 SS G_CDS: 0.09 Total: -47.71 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.19 Total: -22.30 kcal Atomic # 9 Polarization: -1.56 SS G_CDS: 0.04 Total: -1.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -33.39 -7.32 -40.71 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336082246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.262 kcal (2) G-P(sol) polarization free energy of solvation -33.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds