Wall clock time and date at job start Tue Mar 31 2020 06:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38217 * 120.01470 * 2 1 4 4 C 1.38231 * 120.02599 * 180.27079 * 3 2 1 5 5 C 1.50696 * 119.97482 * 179.72251 * 4 3 2 6 6 H 1.08996 * 110.65480 * 341.18502 * 5 4 3 7 7 N 1.47316 * 110.59916 * 218.27268 * 5 4 3 8 8 C 1.34524 * 106.61733 * 241.47620 * 7 5 4 9 9 O 1.21545 * 123.76626 * 180.02562 * 8 7 5 10 10 N 1.33786 * 112.46391 * 359.97438 * 8 7 5 11 11 C 1.46496 * 124.18215 * 180.02562 * 10 8 7 12 12 C 1.50694 * 109.47287 * 89.97583 * 11 10 8 13 13 H 1.07997 * 120.00003 * 0.02562 * 12 11 10 14 14 C 1.37873 * 120.00268 * 180.02562 * 12 11 10 15 15 N 1.31524 * 119.99864 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00290 * 179.97438 * 14 12 11 17 17 H 1.48504 * 109.47065 * 90.00099 * 16 14 12 18 18 H 1.48501 * 109.47423 * 209.99928 * 16 14 12 19 19 H 1.48494 * 109.47238 * 330.00231 * 16 14 12 20 20 C 1.34778 * 111.64065 * 0.02562 * 10 8 7 21 21 O 1.21234 * 127.15287 * 180.02562 * 20 10 8 22 22 C 1.38269 * 120.04877 * 359.45079 * 4 3 2 23 23 C 1.38180 * 120.02383 * 0.27504 * 22 4 3 24 24 C 1.38447 * 120.01252 * 179.71918 * 2 1 3 25 25 F 1.35101 * 120.02047 * 359.97438 * 24 2 1 26 26 H 1.08999 * 109.46986 * 270.28110 * 1 2 3 27 27 H 1.09001 * 109.46956 * 30.27296 * 1 2 3 28 28 H 1.08992 * 109.47366 * 150.27621 * 1 2 3 29 29 H 1.08001 * 119.99015 * 0.02562 * 3 2 1 30 30 H 0.97004 * 126.68848 * 61.51054 * 7 5 4 31 31 H 1.08997 * 109.47120 * 209.97744 * 11 10 8 32 32 H 1.09004 * 109.47031 * 329.97169 * 11 10 8 33 33 H 0.96993 * 119.99865 * 180.02562 * 15 14 12 34 34 H 1.07994 * 119.98761 * 180.24965 * 22 4 3 35 35 H 1.08002 * 120.00851 * 179.97438 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1968 0.0000 4 6 3.5807 1.1971 -0.0057 5 6 4.3333 2.5026 -0.0120 6 1 3.6876 3.3171 -0.3403 7 7 5.5266 2.4089 -0.8708 8 6 6.5906 2.6206 -0.0754 9 8 7.7405 2.6128 -0.4691 10 7 6.2417 2.8419 1.1971 11 6 7.1950 3.1021 2.2786 12 6 7.4418 4.5849 2.3847 13 1 6.9386 5.2654 1.7139 14 6 8.3101 5.0728 3.3381 15 7 8.9233 4.2439 4.1547 16 14 8.6167 6.9107 3.4691 17 1 7.6380 7.5098 4.4118 18 1 9.9947 7.1484 3.9690 19 1 8.4610 7.5352 2.1309 20 6 4.9047 2.7958 1.3611 21 8 4.2875 2.9562 2.3922 22 6 4.2733 0.0004 0.0002 23 6 3.5842 -1.1973 0.0059 24 6 2.1995 -1.1988 0.0059 25 9 1.5247 -2.3692 0.0121 26 1 -0.3633 0.0050 1.0276 27 1 -0.3633 0.8875 -0.5181 28 1 -0.3634 -0.8924 -0.5095 29 1 1.6585 2.1322 0.0004 30 1 5.5419 2.2298 -1.8240 31 1 6.7864 2.7335 3.2195 32 1 8.1343 2.5916 2.0656 33 1 9.5339 4.5872 4.8256 34 1 5.3533 0.0018 -0.0002 35 1 4.1255 -2.1319 0.0100 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336082246.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:13 Heat of formation + Delta-G solvation = -88.194741 kcal Electronic energy + Delta-G solvation = -22839.866040 eV Core-core repulsion = 19138.166358 eV Total energy + Delta-G solvation = -3701.699682 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96338 -43.41571 -40.24412 -39.49703 -37.18229 -36.34535 -34.58818 -33.73082 -32.21337 -29.88923 -28.08805 -27.70590 -25.53933 -24.02912 -23.63632 -22.00233 -21.36328 -19.05019 -18.97601 -18.61271 -18.02067 -17.67026 -17.25676 -16.82338 -16.74263 -16.34485 -16.08440 -15.71493 -15.24198 -15.11286 -14.91929 -14.39794 -14.36890 -14.24093 -14.04117 -13.69519 -13.41515 -13.14504 -13.00543 -12.75419 -12.69009 -12.41019 -12.03298 -11.98116 -11.84029 -11.25330 -10.72275 -10.70233 -10.43586 -9.95596 -9.60556 -8.32529 -6.47450 -0.10189 0.17599 0.64192 1.36484 1.40451 1.42572 1.52622 2.08048 2.19204 2.36972 2.43920 3.00491 3.10681 3.21824 3.36635 3.61891 3.78064 3.97388 4.17671 4.31505 4.34997 4.58815 4.66438 4.75756 4.80240 4.93558 4.97435 5.05118 5.08534 5.19938 5.27545 5.32839 5.57293 5.81317 5.83877 5.86960 6.29426 6.45991 6.59372 7.15530 7.26988 8.77430 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.028278 B = 0.003855 C = 0.003737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 989.921911 B = 7260.734095 C = 7491.518777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.119 4.119 3 C -0.059 4.059 4 C -0.107 4.107 5 C 0.156 3.844 6 H 0.176 0.824 7 N -0.699 5.699 8 C 0.698 3.302 9 O -0.581 6.581 10 N -0.571 5.571 11 C 0.264 3.736 12 C -0.556 4.556 13 H 0.058 0.942 14 C 0.013 3.987 15 N -0.923 5.923 16 Si 0.975 3.025 17 H -0.268 1.268 18 H -0.275 1.275 19 H -0.267 1.267 20 C 0.517 3.483 21 O -0.498 6.498 22 C -0.085 4.085 23 C -0.152 4.152 24 C 0.091 3.909 25 F -0.141 7.141 26 H 0.080 0.920 27 H 0.096 0.904 28 H 0.070 0.930 29 H 0.170 0.830 30 H 0.454 0.546 31 H 0.029 0.971 32 H 0.026 0.974 33 H 0.272 0.728 34 H 0.121 0.879 35 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.816 -7.796 -12.235 22.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.120 4.120 3 C -0.077 4.077 4 C -0.108 4.108 5 C 0.047 3.953 6 H 0.193 0.807 7 N -0.366 5.366 8 C 0.399 3.601 9 O -0.458 6.458 10 N -0.315 5.315 11 C 0.144 3.856 12 C -0.594 4.594 13 H 0.076 0.924 14 C -0.187 4.187 15 N -0.561 5.561 16 Si 0.798 3.202 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.191 1.191 20 C 0.305 3.695 21 O -0.370 6.370 22 C -0.103 4.103 23 C -0.170 4.170 24 C 0.071 3.929 25 F -0.120 7.120 26 H 0.098 0.902 27 H 0.115 0.885 28 H 0.089 0.911 29 H 0.187 0.813 30 H 0.302 0.698 31 H 0.047 0.953 32 H 0.045 0.955 33 H 0.081 0.919 34 H 0.139 0.861 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.363 -7.757 -11.645 22.299 hybrid contribution 0.819 0.245 0.178 0.873 sum -16.544 -7.512 -11.468 21.486 Atomic orbital electron populations 1.20813 0.87955 1.04563 1.03669 1.20206 0.98580 0.91115 1.02123 1.21049 0.91800 0.98929 0.95931 1.19482 0.94352 0.92253 1.04734 1.20893 0.88614 0.99298 0.86458 0.80682 1.45341 1.03501 1.76168 1.11553 1.16054 0.85460 0.77366 0.81198 1.90943 1.20131 1.57665 1.77027 1.46740 1.10175 1.63770 1.10805 1.19017 0.86628 0.96897 0.83015 1.21518 1.27529 0.92032 1.18339 0.92412 1.25870 0.94567 1.03850 0.94432 1.70034 1.28977 1.36963 1.20152 0.85304 0.77929 0.78175 0.78785 1.19284 1.19977 1.19094 1.21343 0.81924 0.74739 0.91484 1.90728 1.65497 1.47491 1.33278 1.20853 1.00230 0.91514 0.97742 1.21208 0.92466 0.99953 1.03399 1.17806 0.90168 0.81386 1.03493 1.91473 1.80368 1.46269 1.93881 0.90189 0.88503 0.91091 0.81287 0.69831 0.95313 0.95546 0.91941 0.86073 0.83359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.33 9.83 71.24 0.70 -0.63 16 2 C -0.12 -2.03 5.89 -19.82 -0.12 -2.15 16 3 C -0.06 -0.97 9.34 22.26 0.21 -0.76 16 4 C -0.11 -2.22 5.07 -19.86 -0.10 -2.32 16 5 C 0.16 3.65 3.89 43.62 0.17 3.82 16 6 H 0.18 2.67 8.05 -2.39 -0.02 2.65 16 7 N -0.70 -17.51 5.50 -463.21 -2.55 -20.06 16 8 C 0.70 27.36 8.61 179.44 1.55 28.90 16 9 O -0.58 -27.65 17.48 -3.86 -0.07 -27.72 16 10 N -0.57 -25.09 2.59 -777.23 -2.01 -27.10 16 11 C 0.26 14.47 5.45 85.63 0.47 14.94 16 12 C -0.56 -32.25 9.39 25.60 0.24 -32.01 16 13 H 0.06 3.29 7.81 -2.91 -0.02 3.27 16 14 C 0.01 0.75 5.46 84.65 0.46 1.21 16 15 N -0.92 -55.28 13.29 21.45 0.28 -54.99 16 16 Si 0.97 44.48 29.54 68.60 2.03 46.51 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 19 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 20 C 0.52 19.33 7.60 87.94 0.67 20.00 16 21 O -0.50 -21.63 17.76 -2.89 -0.05 -21.68 16 22 C -0.08 -1.91 9.31 22.26 0.21 -1.71 16 23 C -0.15 -3.13 10.03 22.31 0.22 -2.91 16 24 C 0.09 1.84 7.24 22.38 0.16 2.00 16 25 F -0.14 -2.96 16.48 44.97 0.74 -2.22 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.07 0.83 7.64 -2.39 -0.02 0.81 16 29 H 0.17 1.73 8.05 -2.91 -0.02 1.71 16 30 H 0.45 8.00 8.96 -92.71 -0.83 7.17 16 31 H 0.03 1.68 8.00 -2.39 -0.02 1.66 16 32 H 0.03 1.57 7.86 -2.39 -0.02 1.55 16 33 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 34 H 0.12 2.99 7.70 -2.91 -0.02 2.96 16 35 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 Total: -1.00 -75.54 317.73 3.53 -72.02 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: 0.31 Total: 6.85 kcal Atomic # 6 Polarization: 23.55 SS G_CDS: 4.84 Total: 28.39 kcal Atomic # 7 Polarization: -97.88 SS G_CDS: -4.27 Total: -102.15 kcal Atomic # 8 Polarization: -49.28 SS G_CDS: -0.12 Total: -49.40 kcal Atomic # 9 Polarization: -2.96 SS G_CDS: 0.74 Total: -2.22 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -75.54 3.53 -72.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336082246.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.178 kcal (2) G-P(sol) polarization free energy of solvation -75.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds