Wall clock time and date at job start Tue Mar 31 2020 06:12:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39696 * 120.20153 * 358.34847 * 3 2 1 5 5 C 1.37828 * 119.91778 * 180.02562 * 4 3 2 6 6 C 1.38554 * 120.33232 * 359.97438 * 5 4 3 7 7 C 1.38048 * 120.41332 * 0.02562 * 6 5 4 8 8 C 1.38837 * 120.07431 * 359.97438 * 7 6 5 9 9 N 1.39264 * 120.17016 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00023 * 24.85193 * 9 8 7 11 11 O 1.21599 * 119.99645 * 5.57605 * 10 9 8 12 12 C 1.47575 * 120.00003 * 185.57987 * 10 9 8 13 13 C 1.40045 * 119.89911 * 359.72149 * 12 10 9 14 14 C 1.36304 * 120.10264 * 179.75890 * 13 12 10 15 15 C 1.40901 * 119.89256 * 0.53756 * 14 13 12 16 16 C 1.41088 * 120.09974 * 179.69366 * 15 14 13 17 17 H 1.07990 * 120.00159 * 214.94195 * 16 15 14 18 18 C 1.40238 * 119.99928 * 34.94400 * 16 15 14 19 19 N 1.30643 * 120.00038 * 355.19967 * 18 16 15 20 20 Si 1.86801 * 120.00176 * 175.19800 * 18 16 15 21 21 H 1.48503 * 109.47070 * 89.99777 * 20 18 16 22 22 H 1.48495 * 109.47164 * 210.00125 * 20 18 16 23 23 H 1.48506 * 109.47051 * 330.00281 * 20 18 16 24 24 C 1.40899 * 119.79994 * 359.71738 * 15 14 13 25 25 C 1.36298 * 119.89448 * 359.97438 * 24 15 14 26 26 H 1.08002 * 120.04371 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83483 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.79253 * 179.72153 * 6 5 4 29 29 H 1.08000 * 119.96573 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00357 * 204.84805 * 9 8 7 31 31 H 1.07996 * 119.94638 * 0.02562 * 13 12 10 32 32 H 1.07993 * 120.05121 * 180.25272 * 14 13 12 33 33 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 34 34 H 1.07997 * 120.05473 * 179.97438 * 24 15 14 35 35 H 1.08000 * 119.95116 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.2059 0.0348 5 6 4.6495 -1.1984 0.0351 6 6 5.3428 0.0007 0.0006 7 6 4.6617 1.2010 -0.0340 8 6 3.2734 1.2133 -0.0350 9 7 2.5842 2.4230 -0.0704 10 6 3.1713 3.5180 -0.5927 11 8 4.2613 3.4283 -1.1243 12 6 2.4914 4.8257 -0.5195 13 6 1.2335 4.9254 0.0881 14 6 0.6039 6.1321 0.1624 15 6 1.2156 7.2781 -0.3833 16 6 0.5650 8.5281 -0.3145 17 1 0.6686 9.2360 -1.1235 18 6 -0.2163 8.8513 0.8043 19 7 -0.4185 7.9612 1.7390 20 14 -0.9678 10.5545 0.9583 21 1 -2.3123 10.5612 0.3277 22 1 -1.0926 10.9125 2.3940 23 1 -0.0959 11.5439 0.2753 24 6 2.4788 7.1719 -0.9984 25 6 3.1036 5.9622 -1.0624 26 1 2.7357 -2.1433 0.0622 27 1 5.1919 -2.1320 0.0616 28 1 6.4227 -0.0035 0.0057 29 1 5.2093 2.1314 -0.0613 30 1 1.6817 2.4775 0.2808 31 1 0.7636 4.0457 0.5022 32 1 -0.3642 6.2088 0.6348 33 1 -0.9586 8.1849 2.5131 34 1 2.9513 8.0475 -1.4184 35 1 4.0721 5.8798 -1.5333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336155082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:50 Heat of formation + Delta-G solvation = 37.749297 kcal Electronic energy + Delta-G solvation = -21083.258896 eV Core-core repulsion = 17817.789782 eV Total energy + Delta-G solvation = -3265.469114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.54212 -38.63416 -37.25462 -36.39537 -34.61114 -33.92926 -31.33197 -30.80794 -29.60201 -29.28779 -26.08911 -23.90351 -23.36248 -21.74108 -21.04209 -19.81498 -19.09097 -17.67831 -17.45287 -16.75098 -15.59786 -15.29598 -15.17631 -14.62846 -14.21118 -14.12616 -14.03853 -13.73289 -13.30569 -13.14349 -12.90344 -12.81293 -12.42841 -12.26683 -11.96208 -11.76664 -11.70045 -11.47783 -11.33652 -11.02184 -10.73661 -10.45591 -10.12680 -9.68994 -9.52222 -9.25994 -8.96890 -8.09387 -7.86636 -7.55487 -6.98886 -4.75244 0.71411 1.26060 2.02540 2.61654 2.85972 2.89585 2.92348 2.94927 2.96983 3.27929 3.55831 3.71994 3.85125 3.93234 4.47185 4.74477 4.88704 5.16809 5.31057 5.37427 5.41140 5.60909 5.87306 5.88798 6.13624 6.14622 6.19217 6.39266 6.49164 6.64458 6.75892 6.85685 6.95331 7.00976 7.31668 7.39481 7.47440 7.61412 7.76069 7.81356 7.96792 8.31433 8.54112 8.60358 8.62690 9.89056 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003387 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.557744 B = 8266.065434 C = 9029.607058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.419 5.419 2 C 0.254 3.746 3 C -0.083 4.083 4 C -0.048 4.048 5 C -0.156 4.156 6 C -0.066 4.066 7 C -0.141 4.141 8 C 0.222 3.778 9 N -0.678 5.678 10 C 0.572 3.428 11 O -0.544 6.544 12 C -0.281 4.281 13 C -0.067 4.067 14 C -0.164 4.164 15 C 0.128 3.872 16 C -0.442 4.442 17 H 0.085 0.915 18 C 0.069 3.931 19 N -0.786 5.786 20 Si 0.922 3.078 21 H -0.266 1.266 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.228 4.228 25 C -0.023 4.023 26 H 0.132 0.868 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.158 0.842 30 H 0.410 0.590 31 H 0.088 0.912 32 H 0.133 0.867 33 H 0.286 0.714 34 H 0.102 0.898 35 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.122 -11.143 0.455 12.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.095 5.095 2 C -0.061 4.061 3 C -0.090 4.090 4 C -0.069 4.069 5 C -0.175 4.175 6 C -0.086 4.086 7 C -0.161 4.161 8 C 0.121 3.879 9 N -0.320 5.320 10 C 0.370 3.630 11 O -0.425 6.425 12 C -0.286 4.286 13 C -0.087 4.087 14 C -0.184 4.184 15 C 0.125 3.875 16 C -0.471 4.471 17 H 0.103 0.897 18 C -0.151 4.151 19 N -0.411 5.411 20 Si 0.746 3.254 21 H -0.191 1.191 22 H -0.199 1.199 23 H -0.183 1.183 24 C -0.247 4.247 25 C -0.042 4.042 26 H 0.149 0.851 27 H 0.147 0.853 28 H 0.148 0.852 29 H 0.176 0.824 30 H 0.248 0.752 31 H 0.106 0.894 32 H 0.151 0.849 33 H 0.097 0.903 34 H 0.120 0.880 35 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 4.951 -11.094 0.319 12.153 hybrid contribution -0.468 0.673 0.444 0.932 sum 4.483 -10.421 0.763 11.370 Atomic orbital electron populations 1.81271 1.11841 1.06693 1.09674 1.25632 0.92600 0.94257 0.93603 1.15781 0.84226 0.93652 1.15363 1.20899 0.94271 0.95579 0.96157 1.20967 0.93466 0.98495 1.04553 1.21300 1.00364 0.91729 0.95167 1.21532 0.91856 1.00592 1.02110 1.17855 0.91901 0.84183 0.93947 1.43726 1.19272 1.07831 1.61162 1.18792 0.84803 0.83735 0.75624 1.90615 1.21426 1.85847 1.44580 1.18806 0.99743 0.91409 1.18595 1.20556 0.93643 0.97206 0.97266 1.21288 1.01514 0.90710 1.04857 1.17893 0.89573 0.92884 0.87154 1.19840 1.23349 1.00517 1.03357 0.89704 1.26109 0.93968 0.99918 0.95078 1.69662 1.28919 1.34802 1.07673 0.86063 0.79862 0.80930 0.78545 1.19081 1.19893 1.18284 1.20863 0.96780 0.96289 1.10813 1.20370 0.97573 0.91597 0.94662 0.85060 0.85258 0.85162 0.82448 0.75208 0.89441 0.84936 0.90301 0.87960 0.87699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -6.72 18.54 41.83 0.78 -5.94 16 2 C 0.25 3.60 14.26 -22.47 -0.32 3.28 16 3 C -0.08 -1.06 5.75 -106.64 -0.61 -1.67 16 4 C -0.05 -0.47 9.75 -39.19 -0.38 -0.85 16 5 C -0.16 -1.35 10.02 -39.61 -0.40 -1.75 16 6 C -0.07 -0.67 10.03 -39.53 -0.40 -1.06 16 7 C -0.14 -1.91 8.70 -39.43 -0.34 -2.26 16 8 C 0.22 3.25 6.43 -83.47 -0.54 2.71 16 9 N -0.68 -11.30 5.09 -10.59 -0.05 -11.35 16 10 C 0.57 11.27 7.56 -12.45 -0.09 11.18 16 11 O -0.54 -11.33 13.48 5.28 0.07 -11.26 16 12 C -0.28 -6.07 5.89 -104.73 -0.62 -6.69 16 13 C -0.07 -1.46 9.47 -39.60 -0.37 -1.84 16 14 C -0.16 -3.95 8.61 -39.27 -0.34 -4.29 16 15 C 0.13 3.16 5.55 -106.80 -0.59 2.57 16 16 C -0.44 -10.72 9.03 -37.75 -0.34 -11.06 16 17 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 18 C 0.07 1.58 5.43 -17.31 -0.09 1.48 16 19 N -0.79 -18.63 10.59 55.56 0.59 -18.04 16 20 Si 0.92 17.21 29.56 -169.99 -5.03 12.19 16 21 H -0.27 -4.90 7.11 56.52 0.40 -4.50 16 22 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 23 H -0.26 -4.80 7.11 56.52 0.40 -4.40 16 24 C -0.23 -5.24 9.73 -39.27 -0.38 -5.62 16 25 C -0.02 -0.50 9.52 -39.60 -0.38 -0.88 16 26 H 0.13 0.96 8.06 -52.49 -0.42 0.53 16 27 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 28 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 29 H 0.16 2.44 5.78 -52.49 -0.30 2.14 16 30 H 0.41 6.54 5.91 -40.82 -0.24 6.30 16 31 H 0.09 1.66 6.39 -52.49 -0.34 1.33 16 32 H 0.13 3.28 6.13 -52.49 -0.32 2.96 16 33 H 0.29 6.15 8.29 -40.82 -0.34 5.81 16 34 H 0.10 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.10 2.18 7.63 -52.49 -0.40 1.78 16 LS Contribution 314.54 15.07 4.74 4.74 Total: -1.00 -26.97 314.54 -7.95 -34.91 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -2.84 Total: 11.50 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: -6.20 Total: -16.74 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 1.31 Total: -35.33 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.07 Total: -11.26 kcal Atomic # 14 Polarization: 17.21 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -26.97 -7.95 -34.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336155082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.663 kcal (2) G-P(sol) polarization free energy of solvation -26.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds