Wall clock time and date at job start Tue Mar 31 2020 06:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39696 * 120.20153 * 358.34847 * 3 2 1 5 5 C 1.37828 * 119.91778 * 180.02562 * 4 3 2 6 6 C 1.38554 * 120.33232 * 359.97438 * 5 4 3 7 7 C 1.38048 * 120.41332 * 0.02562 * 6 5 4 8 8 C 1.38837 * 120.07431 * 359.97438 * 7 6 5 9 9 N 1.39264 * 120.17016 * 180.02562 * 8 7 6 10 10 C 1.34780 * 120.00023 * 24.85193 * 9 8 7 11 11 O 1.21599 * 119.99645 * 5.57605 * 10 9 8 12 12 C 1.47575 * 120.00003 * 185.57987 * 10 9 8 13 13 C 1.40045 * 119.89911 * 359.72149 * 12 10 9 14 14 C 1.36304 * 120.10264 * 179.75890 * 13 12 10 15 15 C 1.40901 * 119.89256 * 0.53756 * 14 13 12 16 16 C 1.41088 * 120.09974 * 179.69366 * 15 14 13 17 17 H 1.07990 * 120.00159 * 214.94195 * 16 15 14 18 18 C 1.40238 * 119.99928 * 34.94400 * 16 15 14 19 19 N 1.30643 * 120.00038 * 355.19967 * 18 16 15 20 20 Si 1.86801 * 120.00176 * 175.19800 * 18 16 15 21 21 H 1.48503 * 109.47070 * 89.99777 * 20 18 16 22 22 H 1.48495 * 109.47164 * 210.00125 * 20 18 16 23 23 H 1.48506 * 109.47051 * 330.00281 * 20 18 16 24 24 C 1.40899 * 119.79994 * 359.71738 * 15 14 13 25 25 C 1.36298 * 119.89448 * 359.97438 * 24 15 14 26 26 H 1.08002 * 120.04371 * 359.97438 * 4 3 2 27 27 H 1.07998 * 119.83483 * 180.02562 * 5 4 3 28 28 H 1.07995 * 119.79253 * 179.72153 * 6 5 4 29 29 H 1.08000 * 119.96573 * 180.02562 * 7 6 5 30 30 H 0.96996 * 120.00357 * 204.84805 * 9 8 7 31 31 H 1.07996 * 119.94638 * 0.02562 * 13 12 10 32 32 H 1.07993 * 120.05121 * 180.25272 * 14 13 12 33 33 H 0.97001 * 119.99931 * 179.97438 * 19 18 16 34 34 H 1.07997 * 120.05473 * 179.97438 * 24 15 14 35 35 H 1.08000 * 119.95116 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2713 -1.2059 0.0348 5 6 4.6495 -1.1984 0.0351 6 6 5.3428 0.0007 0.0006 7 6 4.6617 1.2010 -0.0340 8 6 3.2734 1.2133 -0.0350 9 7 2.5842 2.4230 -0.0704 10 6 3.1713 3.5180 -0.5927 11 8 4.2613 3.4283 -1.1243 12 6 2.4914 4.8257 -0.5195 13 6 1.2335 4.9254 0.0881 14 6 0.6039 6.1321 0.1624 15 6 1.2156 7.2781 -0.3833 16 6 0.5650 8.5281 -0.3145 17 1 0.6686 9.2360 -1.1235 18 6 -0.2163 8.8513 0.8043 19 7 -0.4185 7.9612 1.7390 20 14 -0.9678 10.5545 0.9583 21 1 -2.3123 10.5612 0.3277 22 1 -1.0926 10.9125 2.3940 23 1 -0.0959 11.5439 0.2753 24 6 2.4788 7.1719 -0.9984 25 6 3.1036 5.9622 -1.0624 26 1 2.7357 -2.1433 0.0622 27 1 5.1919 -2.1320 0.0616 28 1 6.4227 -0.0035 0.0057 29 1 5.2093 2.1314 -0.0613 30 1 1.6817 2.4775 0.2808 31 1 0.7636 4.0457 0.5022 32 1 -0.3642 6.2088 0.6348 33 1 -0.9586 8.1849 2.5131 34 1 2.9513 8.0475 -1.4184 35 1 4.0721 5.8798 -1.5333 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336155082.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:49 Heat of formation + Delta-G solvation = 24.723131 kcal Electronic energy + Delta-G solvation = -21083.823753 eV Core-core repulsion = 17817.789782 eV Total energy + Delta-G solvation = -3266.033971 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 292.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.81629 -39.95966 -38.88049 -37.52189 -35.92589 -35.66043 -32.38648 -32.27010 -31.38582 -30.52494 -27.76683 -24.87733 -24.68860 -23.21933 -22.74908 -21.26421 -20.21400 -19.40824 -18.70077 -18.08807 -17.23139 -16.52432 -16.21216 -16.01280 -15.82480 -15.41185 -15.21319 -15.02273 -14.86503 -14.51471 -14.18090 -13.99869 -13.94124 -13.71876 -13.48699 -13.33806 -12.88367 -12.70407 -12.59690 -12.46566 -12.36039 -11.78598 -11.62570 -11.47033 -11.19607 -10.74326 -9.92308 -9.67283 -9.43717 -9.08874 -8.70587 -6.58184 -0.27484 0.18155 0.53049 1.07170 1.38636 1.40186 1.50268 1.52763 1.92003 1.98267 2.00626 2.16181 2.71855 2.81807 2.95083 3.56741 3.78309 3.97434 4.15439 4.22296 4.37873 4.43279 4.46061 4.50027 4.87170 4.96052 4.99073 5.06325 5.16798 5.25543 5.33916 5.45722 5.54683 5.58115 5.70825 5.84405 5.96459 5.97462 6.17353 6.26361 6.39528 6.50807 6.74477 6.81555 7.08823 8.19975 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.027006 B = 0.003387 C = 0.003100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.557744 B = 8266.065434 C = 9029.607058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.458 5.458 2 C 0.271 3.729 3 C -0.088 4.088 4 C -0.038 4.038 5 C -0.134 4.134 6 C -0.056 4.056 7 C -0.160 4.160 8 C 0.189 3.811 9 N -0.673 5.673 10 C 0.577 3.423 11 O -0.558 6.558 12 C -0.285 4.285 13 C -0.063 4.063 14 C -0.186 4.186 15 C 0.101 3.899 16 C -0.475 4.475 17 H 0.087 0.913 18 C 0.030 3.970 19 N -0.816 5.816 20 Si 0.994 3.006 21 H -0.260 1.260 22 H -0.267 1.267 23 H -0.256 1.256 24 C -0.237 4.237 25 C -0.030 4.030 26 H 0.163 0.837 27 H 0.174 0.826 28 H 0.160 0.840 29 H 0.133 0.867 30 H 0.411 0.589 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.293 0.707 34 H 0.113 0.887 35 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -13.397 0.685 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.135 5.135 2 C -0.043 4.043 3 C -0.095 4.095 4 C -0.058 4.058 5 C -0.152 4.152 6 C -0.075 4.075 7 C -0.181 4.181 8 C 0.090 3.910 9 N -0.315 5.315 10 C 0.373 3.627 11 O -0.439 6.439 12 C -0.290 4.290 13 C -0.082 4.082 14 C -0.206 4.206 15 C 0.098 3.902 16 C -0.503 4.503 17 H 0.105 0.895 18 C -0.186 4.186 19 N -0.441 5.441 20 Si 0.814 3.186 21 H -0.185 1.185 22 H -0.192 1.192 23 H -0.180 1.180 24 C -0.257 4.257 25 C -0.049 4.049 26 H 0.180 0.820 27 H 0.191 0.809 28 H 0.177 0.823 29 H 0.151 0.849 30 H 0.248 0.752 31 H 0.128 0.872 32 H 0.137 0.863 33 H 0.104 0.896 34 H 0.131 0.869 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 6.172 -13.403 0.551 14.766 hybrid contribution -0.671 1.093 0.369 1.335 sum 5.500 -12.310 0.920 13.514 Atomic orbital electron populations 1.81287 1.13001 1.07944 1.11244 1.25887 0.92833 0.93118 0.92471 1.15915 0.83321 0.94143 1.16121 1.21354 0.94991 0.95415 0.94053 1.21469 0.93015 0.99540 1.01222 1.21667 1.01907 0.90833 0.93057 1.21456 0.91472 1.01285 1.03849 1.18057 0.92468 0.83679 0.96782 1.43462 1.19204 1.08111 1.60762 1.18437 0.84508 0.83920 0.75838 1.90608 1.21847 1.86226 1.45257 1.19119 0.99639 0.92635 1.17565 1.20738 0.93624 0.97301 0.96546 1.21263 1.01504 0.91612 1.06186 1.18219 0.90466 0.93492 0.88009 1.20094 1.25015 1.00797 1.04429 0.89454 1.26970 0.93812 1.03652 0.94188 1.69721 1.29488 1.36656 1.08245 0.85006 0.78952 0.75979 0.78692 1.18455 1.19177 1.17970 1.21029 0.96556 0.97143 1.10933 1.20558 0.98029 0.91592 0.94721 0.81951 0.80883 0.82257 0.84911 0.75154 0.87213 0.86259 0.89619 0.86903 0.86583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -14.51 18.54 19.01 0.35 -14.15 16 2 C 0.27 7.39 14.26 88.34 1.26 8.64 16 3 C -0.09 -2.06 5.75 -21.17 -0.12 -2.18 16 4 C -0.04 -0.56 9.75 22.53 0.22 -0.34 16 5 C -0.13 -1.60 10.02 22.25 0.22 -1.37 16 6 C -0.06 -0.91 10.03 22.30 0.22 -0.69 16 7 C -0.16 -4.15 8.70 22.37 0.19 -3.95 16 8 C 0.19 5.36 6.43 38.61 0.25 5.60 16 9 N -0.67 -22.53 5.09 -305.69 -1.56 -24.09 16 10 C 0.58 23.00 7.56 86.71 0.66 23.65 16 11 O -0.56 -23.46 13.48 -4.03 -0.05 -23.51 16 12 C -0.29 -12.59 5.89 -19.94 -0.12 -12.70 16 13 C -0.06 -2.82 9.47 22.26 0.21 -2.61 16 14 C -0.19 -9.32 8.61 22.47 0.19 -9.13 16 15 C 0.10 5.19 5.55 -21.28 -0.12 5.07 16 16 C -0.48 -23.83 9.03 23.46 0.21 -23.62 16 17 H 0.09 4.16 7.85 -2.92 -0.02 4.13 16 18 C 0.03 1.41 5.43 85.36 0.46 1.87 16 19 N -0.82 -39.78 10.59 21.87 0.23 -39.55 16 20 Si 0.99 35.49 29.56 68.60 2.03 37.51 16 21 H -0.26 -8.97 7.11 99.48 0.71 -8.26 16 22 H -0.27 -9.16 7.11 99.48 0.71 -8.45 16 23 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 24 C -0.24 -11.25 9.73 22.47 0.22 -11.03 16 25 C -0.03 -1.35 9.52 22.26 0.21 -1.14 16 26 H 0.16 1.49 8.06 -2.91 -0.02 1.47 16 27 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 28 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 29 H 0.13 4.12 5.78 -2.91 -0.02 4.11 16 30 H 0.41 13.24 5.91 -92.71 -0.55 12.69 16 31 H 0.11 4.27 6.39 -2.91 -0.02 4.25 16 32 H 0.12 6.22 6.13 -2.91 -0.02 6.20 16 33 H 0.29 12.86 8.29 -92.71 -0.77 12.09 16 34 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 35 H 0.12 4.89 7.63 -2.91 -0.02 4.87 16 Total: -1.00 -61.36 314.54 5.79 -55.57 By element: Atomic # 1 Polarization: 31.53 SS G_CDS: 0.61 Total: 32.14 kcal Atomic # 6 Polarization: -28.10 SS G_CDS: 4.18 Total: -23.92 kcal Atomic # 7 Polarization: -76.82 SS G_CDS: -0.97 Total: -77.79 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 35.49 SS G_CDS: 2.03 Total: 37.51 kcal Total: -61.36 5.79 -55.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336155082.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.291 kcal (2) G-P(sol) polarization free energy of solvation -61.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds