Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47594 * 270.00312 * 3 2 1 5 5 H 1.48503 * 109.47248 * 30.00440 * 3 2 1 6 6 H 1.48501 * 109.47115 * 149.99961 * 3 2 1 7 7 C 1.40034 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 197.06757 * 7 2 1 9 9 C 1.41543 * 119.99719 * 17.06757 * 7 2 1 10 10 C 1.41177 * 120.99921 * 23.73936 * 9 7 2 11 11 C 1.37590 * 119.01800 * 180.30083 * 10 9 7 12 12 N 1.32084 * 121.10550 * 359.72034 * 11 10 9 13 13 C 1.32466 * 122.23594 * 0.02562 * 12 11 10 14 14 N 1.39465 * 119.58254 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99995 * 355.10817 * 14 13 12 16 16 O 1.21284 * 120.00040 * 4.83363 * 15 14 13 17 17 C 1.50697 * 120.00070 * 184.84084 * 15 14 13 18 18 H 1.08997 * 109.57750 * 29.74059 * 17 15 14 19 19 C 1.53100 * 109.57655 * 149.99801 * 17 15 14 20 20 C 1.52583 * 109.95473 * 182.82796 * 19 17 15 21 21 C 1.52582 * 110.72866 * 289.32750 * 20 19 17 22 22 C 1.53088 * 109.95793 * 70.67558 * 21 20 19 23 23 S 1.81749 * 109.57539 * 269.35402 * 17 15 14 24 24 C 1.38597 * 120.83859 * 359.97438 * 13 12 11 25 25 H 0.97004 * 119.99867 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.49134 * 0.04024 * 10 9 7 27 27 H 1.08001 * 119.44847 * 179.74549 * 11 10 9 28 28 H 0.97003 * 120.00003 * 175.10969 * 14 13 12 29 29 H 1.08999 * 109.38942 * 302.97836 * 19 17 15 30 30 H 1.09002 * 109.38940 * 62.68284 * 19 17 15 31 31 H 1.09003 * 109.22354 * 49.64664 * 20 19 17 32 32 H 1.08999 * 109.22146 * 169.00011 * 20 19 17 33 33 H 1.09002 * 109.38777 * 190.82429 * 21 20 19 34 34 H 1.09001 * 109.38871 * 310.52123 * 21 20 19 35 35 H 1.09000 * 109.57845 * 56.77681 * 22 21 20 36 36 H 1.08998 * 109.57913 * 177.17229 * 22 21 20 37 37 H 1.08001 * 120.60230 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0519 -1.2334 0.2739 9 6 1.3466 -2.4113 -0.3609 10 6 0.1927 -2.3892 -1.1739 11 6 -0.4211 -3.5783 -1.4941 12 7 0.0549 -4.7308 -1.0586 13 6 1.1366 -4.8063 -0.2978 14 7 1.5907 -6.0531 0.1316 15 6 0.8763 -7.1621 -0.1443 16 8 -0.1144 -7.0878 -0.8401 17 6 1.3082 -8.4945 0.4118 18 1 1.8212 -8.3448 1.3618 19 6 0.0802 -9.3833 0.6264 20 6 0.5002 -10.7088 1.2547 21 6 1.2671 -11.5637 0.2502 22 6 2.6455 -10.9516 -0.0121 23 16 2.4261 -9.3121 -0.7652 24 6 1.8229 -3.6620 0.0770 25 1 -0.4850 0.8401 0.0004 26 1 -0.2049 -1.4525 -1.5357 27 1 -1.3067 -3.5691 -2.1123 28 1 2.4207 -6.1221 0.6289 29 1 -0.6225 -8.8760 1.2873 30 1 -0.4006 -9.5739 -0.3331 31 1 1.1364 -10.5113 2.1176 32 1 -0.3886 -11.2488 1.5811 33 1 1.3884 -12.5705 0.6500 34 1 0.7087 -11.6120 -0.6847 35 1 3.1859 -10.8515 0.9293 36 1 3.2069 -11.5932 -0.6913 37 1 2.7047 -3.7281 0.6971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336228790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = -11.350448 kcal Electronic energy + Delta-G solvation = -20343.539514 eV Core-core repulsion = 17211.385227 eV Total energy + Delta-G solvation = -3132.154287 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.75876 -37.99001 -36.64733 -34.50706 -33.59232 -31.83773 -30.69279 -28.87509 -27.46039 -26.00640 -23.96519 -21.88617 -21.63374 -20.84357 -19.73521 -17.96415 -17.32329 -16.65706 -15.94326 -15.30218 -15.04110 -14.95343 -14.25561 -14.23015 -14.03476 -13.89219 -13.49138 -13.28260 -12.95902 -12.84264 -12.42420 -12.10138 -11.78171 -11.64395 -11.42991 -11.26908 -11.12695 -10.98946 -10.82874 -10.38789 -10.05395 -9.85818 -9.73840 -9.42110 -9.35966 -8.05999 -7.80227 -7.73243 -7.05196 -6.83698 -4.62637 1.29692 2.28119 2.65595 2.75259 3.01510 3.04528 3.20075 3.42663 3.59199 3.84204 4.39153 4.48220 4.62134 4.65791 4.68063 4.91255 5.00197 5.14911 5.31885 5.39018 5.58457 5.67981 5.74002 5.74657 5.88264 5.99370 6.13452 6.56607 6.57733 6.77240 6.89837 7.11086 7.38927 7.47009 7.75011 7.86342 8.15945 8.43882 8.63634 8.72871 8.80708 9.68354 10.05048 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.003169 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.977320 B = 8833.985447 C = 9138.985472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.078 3.922 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.277 1.277 6 H -0.261 1.261 7 C -0.456 4.456 8 H 0.082 0.918 9 C 0.146 3.854 10 C -0.225 4.225 11 C 0.104 3.896 12 N -0.555 5.555 13 C 0.349 3.651 14 N -0.654 5.654 15 C 0.519 3.481 16 O -0.461 6.461 17 C -0.077 4.077 18 H 0.103 0.897 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.089 4.089 23 S -0.221 6.221 24 C -0.303 4.303 25 H 0.284 0.716 26 H 0.127 0.873 27 H 0.124 0.876 28 H 0.407 0.593 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.106 0.894 37 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.074 -15.738 3.740 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.408 5.408 2 C -0.142 4.142 3 Si 0.737 3.263 4 H -0.191 1.191 5 H -0.202 1.202 6 H -0.185 1.185 7 C -0.487 4.487 8 H 0.100 0.900 9 C 0.138 3.862 10 C -0.248 4.248 11 C -0.047 4.047 12 N -0.274 5.274 13 C 0.122 3.878 14 N -0.300 5.300 15 C 0.300 3.700 16 O -0.329 6.329 17 C -0.209 4.209 18 H 0.122 0.878 19 C -0.145 4.145 20 C -0.166 4.166 21 C -0.162 4.162 22 C -0.237 4.237 23 S 0.005 5.995 24 C -0.329 4.329 25 H 0.095 0.905 26 H 0.145 0.855 27 H 0.141 0.859 28 H 0.242 0.758 29 H 0.096 0.904 30 H 0.107 0.893 31 H 0.082 0.918 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.124 0.876 37 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.117 -15.969 2.065 16.401 hybrid contribution 0.829 1.122 1.777 2.259 sum 3.946 -14.847 3.842 15.836 Atomic orbital electron populations 1.69785 1.07735 1.29627 1.33665 1.25974 0.94763 1.01566 0.91874 0.86232 0.80436 0.80136 0.79483 1.19089 1.20186 1.18488 1.19576 0.97959 0.90727 1.40425 0.90006 1.17570 0.90284 0.91435 0.86931 1.22209 1.00687 0.98202 1.03694 1.21891 0.97776 0.87694 0.97309 1.67203 1.14136 1.28963 1.17123 1.17981 0.92614 0.82931 0.94310 1.43398 1.25464 1.05095 1.56012 1.19631 0.84534 0.83898 0.81898 1.90805 1.24221 1.84823 1.33096 1.23421 0.99944 0.96632 1.00939 0.87848 1.21596 0.95310 0.94061 1.03508 1.21546 1.00855 0.95831 0.98322 1.21734 0.94617 0.99028 1.00824 1.23530 1.00445 0.95757 1.03997 1.87303 1.61251 1.14169 1.36730 1.21180 1.06519 0.91981 1.13238 0.90538 0.85543 0.85863 0.75783 0.90373 0.89273 0.91752 0.90653 0.90842 0.90323 0.89783 0.87585 0.88025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.66 10.93 55.55 0.61 -19.05 16 2 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 3 Si 0.91 17.98 29.59 -169.99 -5.03 12.95 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 5 H -0.28 -5.33 7.11 56.52 0.40 -4.93 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.46 -11.73 9.12 -37.65 -0.34 -12.07 16 8 H 0.08 2.00 7.90 -52.49 -0.41 1.59 16 9 C 0.15 3.86 5.60 -106.55 -0.60 3.26 16 10 C -0.22 -5.88 8.79 -38.70 -0.34 -6.22 16 11 C 0.10 2.64 11.15 -17.68 -0.20 2.44 16 12 N -0.55 -14.40 7.85 -12.52 -0.10 -14.50 16 13 C 0.35 8.34 7.42 -154.71 -1.15 7.19 16 14 N -0.65 -12.48 5.39 -11.49 -0.06 -12.54 16 15 C 0.52 9.68 6.87 -10.99 -0.08 9.60 16 16 O -0.46 -10.57 14.50 5.55 0.08 -10.49 16 17 C -0.08 -1.03 2.91 -27.83 -0.08 -1.11 16 18 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 19 C -0.11 -1.26 4.59 -26.89 -0.12 -1.38 16 20 C -0.13 -1.08 5.61 -27.16 -0.15 -1.23 16 21 C -0.12 -0.96 5.75 -26.90 -0.15 -1.11 16 22 C -0.09 -0.75 6.45 37.20 0.24 -0.51 16 23 S -0.22 -2.85 21.68 -107.50 -2.33 -5.18 16 24 C -0.30 -7.36 9.73 -38.48 -0.37 -7.74 16 25 H 0.28 6.43 8.29 -40.82 -0.34 6.09 16 26 H 0.13 3.34 6.20 -52.49 -0.33 3.01 16 27 H 0.12 2.80 8.06 -52.49 -0.42 2.38 16 28 H 0.41 6.19 8.70 -40.82 -0.35 5.83 16 29 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.09 1.21 7.87 -51.93 -0.41 0.81 16 31 H 0.06 0.49 8.08 -51.93 -0.42 0.07 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.69 8.06 -51.93 -0.42 0.27 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.11 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.10 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 320.50 15.07 4.83 4.83 Total: -1.00 -31.38 320.50 -10.30 -41.68 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -4.86 Total: 9.37 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -3.44 Total: -7.08 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.45 Total: -46.08 kcal Atomic # 8 Polarization: -10.57 SS G_CDS: 0.08 Total: -10.49 kcal Atomic # 14 Polarization: 17.98 SS G_CDS: -5.03 Total: 12.95 kcal Atomic # 16 Polarization: -2.85 SS G_CDS: -2.33 Total: -5.18 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.38 -10.30 -41.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336228790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.326 kcal (2) G-P(sol) polarization free energy of solvation -31.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.350 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds