Wall clock time and date at job start Tue Mar 31 2020 06:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30738 * 1 3 3 Si 1.86796 * 120.00073 * 2 1 4 4 H 1.48498 * 109.47594 * 270.00312 * 3 2 1 5 5 H 1.48503 * 109.47248 * 30.00440 * 3 2 1 6 6 H 1.48501 * 109.47115 * 149.99961 * 3 2 1 7 7 C 1.40034 * 120.00149 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00129 * 197.06757 * 7 2 1 9 9 C 1.41543 * 119.99719 * 17.06757 * 7 2 1 10 10 C 1.41177 * 120.99921 * 23.73936 * 9 7 2 11 11 C 1.37590 * 119.01800 * 180.30083 * 10 9 7 12 12 N 1.32084 * 121.10550 * 359.72034 * 11 10 9 13 13 C 1.32466 * 122.23594 * 0.02562 * 12 11 10 14 14 N 1.39465 * 119.58254 * 179.97438 * 13 12 11 15 15 C 1.34776 * 119.99995 * 355.10817 * 14 13 12 16 16 O 1.21284 * 120.00040 * 4.83363 * 15 14 13 17 17 C 1.50697 * 120.00070 * 184.84084 * 15 14 13 18 18 H 1.08997 * 109.57750 * 29.74059 * 17 15 14 19 19 C 1.53100 * 109.57655 * 149.99801 * 17 15 14 20 20 C 1.52583 * 109.95473 * 182.82796 * 19 17 15 21 21 C 1.52582 * 110.72866 * 289.32750 * 20 19 17 22 22 C 1.53088 * 109.95793 * 70.67558 * 21 20 19 23 23 S 1.81749 * 109.57539 * 269.35402 * 17 15 14 24 24 C 1.38597 * 120.83859 * 359.97438 * 13 12 11 25 25 H 0.97004 * 119.99867 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.49134 * 0.04024 * 10 9 7 27 27 H 1.08001 * 119.44847 * 179.74549 * 11 10 9 28 28 H 0.97003 * 120.00003 * 175.10969 * 14 13 12 29 29 H 1.08999 * 109.38942 * 302.97836 * 19 17 15 30 30 H 1.09002 * 109.38940 * 62.68284 * 19 17 15 31 31 H 1.09003 * 109.22354 * 49.64664 * 20 19 17 32 32 H 1.08999 * 109.22146 * 169.00011 * 20 19 17 33 33 H 1.09002 * 109.38777 * 190.82429 * 21 20 19 34 34 H 1.09001 * 109.38871 * 310.52123 * 21 20 19 35 35 H 1.09000 * 109.57845 * 56.77681 * 22 21 20 36 36 H 1.08998 * 109.57913 * 177.17229 * 22 21 20 37 37 H 1.08001 * 120.60230 * 180.02562 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 2.4889 2.0465 -1.4000 5 1 1.4389 2.6526 0.7001 6 1 3.5389 1.4401 0.7000 7 6 2.0076 -1.2127 -0.0005 8 1 3.0519 -1.2334 0.2739 9 6 1.3466 -2.4113 -0.3609 10 6 0.1927 -2.3892 -1.1739 11 6 -0.4211 -3.5783 -1.4941 12 7 0.0549 -4.7308 -1.0586 13 6 1.1366 -4.8063 -0.2978 14 7 1.5907 -6.0531 0.1316 15 6 0.8763 -7.1621 -0.1443 16 8 -0.1144 -7.0878 -0.8401 17 6 1.3082 -8.4945 0.4118 18 1 1.8212 -8.3448 1.3618 19 6 0.0802 -9.3833 0.6264 20 6 0.5002 -10.7088 1.2547 21 6 1.2671 -11.5637 0.2502 22 6 2.6455 -10.9516 -0.0121 23 16 2.4261 -9.3121 -0.7652 24 6 1.8229 -3.6620 0.0770 25 1 -0.4850 0.8401 0.0004 26 1 -0.2049 -1.4525 -1.5357 27 1 -1.3067 -3.5691 -2.1123 28 1 2.4207 -6.1221 0.6289 29 1 -0.6225 -8.8760 1.2873 30 1 -0.4006 -9.5739 -0.3331 31 1 1.1364 -10.5113 2.1176 32 1 -0.3886 -11.2488 1.5811 33 1 1.3884 -12.5705 0.6500 34 1 0.7087 -11.6120 -0.6847 35 1 3.1859 -10.8515 0.9293 36 1 3.2069 -11.5932 -0.6913 37 1 2.7047 -3.7281 0.6971 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336228790.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:16 Heat of formation + Delta-G solvation = -29.510091 kcal Electronic energy + Delta-G solvation = -20344.326976 eV Core-core repulsion = 17211.385227 eV Total energy + Delta-G solvation = -3132.941749 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.37841 -39.72364 -37.54386 -36.29094 -35.37582 -32.83968 -32.61983 -30.49664 -28.51763 -27.93080 -25.03837 -23.72268 -23.22751 -21.64490 -21.32426 -19.74351 -18.62392 -17.88180 -17.72035 -16.90579 -16.31053 -16.08875 -16.05000 -15.77558 -15.31502 -15.03948 -14.72837 -14.48359 -14.40924 -14.23282 -13.92455 -13.55848 -13.18841 -12.96494 -12.81713 -12.59507 -12.39868 -12.09121 -11.90085 -11.84587 -11.64229 -11.49741 -11.21590 -11.02617 -10.66146 -10.02789 -9.64142 -8.92192 -8.78628 -8.68833 -6.59605 0.20954 0.81411 0.96842 1.40356 1.44821 1.54385 1.56266 1.95252 2.05934 2.19255 2.78175 3.38199 3.53463 3.71623 3.82438 3.90192 4.06616 4.10717 4.21208 4.42102 4.63723 4.68494 4.73426 4.80095 4.89402 4.92307 4.99584 5.01617 5.10081 5.14362 5.20995 5.35400 5.44681 5.58437 5.90778 6.06446 6.37920 6.55806 6.76513 6.78935 7.18242 7.79264 8.23322 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.040106 B = 0.003169 C = 0.003063 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.977320 B = 8833.985447 C = 9138.985472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.812 5.812 2 C 0.038 3.962 3 Si 0.991 3.009 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.253 1.253 7 C -0.482 4.482 8 H 0.088 0.912 9 C 0.119 3.881 10 C -0.244 4.244 11 C 0.097 3.903 12 N -0.580 5.580 13 C 0.346 3.654 14 N -0.645 5.645 15 C 0.515 3.485 16 O -0.510 6.510 17 C -0.061 4.061 18 H 0.134 0.866 19 C -0.105 4.105 20 C -0.121 4.121 21 C -0.122 4.122 22 C -0.070 4.070 23 S -0.278 6.278 24 C -0.313 4.313 25 H 0.293 0.707 26 H 0.117 0.883 27 H 0.139 0.861 28 H 0.425 0.575 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.064 0.936 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.757 -16.945 5.325 18.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.180 4.180 3 Si 0.811 3.189 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.177 1.177 7 C -0.512 4.512 8 H 0.106 0.894 9 C 0.110 3.890 10 C -0.268 4.268 11 C -0.053 4.053 12 N -0.301 5.301 13 C 0.118 3.882 14 N -0.293 5.293 15 C 0.299 3.701 16 O -0.382 6.382 17 C -0.192 4.192 18 H 0.152 0.848 19 C -0.144 4.144 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.218 4.218 23 S -0.053 6.053 24 C -0.339 4.339 25 H 0.104 0.896 26 H 0.135 0.865 27 H 0.157 0.843 28 H 0.264 0.736 29 H 0.088 0.912 30 H 0.082 0.918 31 H 0.100 0.900 32 H 0.108 0.892 33 H 0.123 0.877 34 H 0.083 0.917 35 H 0.124 0.876 36 H 0.140 0.860 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 4.827 -17.220 3.677 18.258 hybrid contribution 0.287 1.407 1.283 1.926 sum 5.114 -15.813 4.961 17.344 Atomic orbital electron populations 1.69832 1.09331 1.31249 1.33272 1.26915 0.95507 1.04924 0.90669 0.85068 0.79104 0.75135 0.79625 1.18683 1.19151 1.17691 1.19903 0.98456 0.91532 1.41307 0.89351 1.17981 0.90762 0.92808 0.87415 1.22169 1.01612 0.98030 1.04973 1.22172 0.98239 0.87585 0.97340 1.67311 1.15373 1.29059 1.18322 1.18279 0.91823 0.84784 0.93293 1.43413 1.26253 1.03862 1.55768 1.20582 0.83478 0.85317 0.80701 1.90776 1.26358 1.85799 1.35276 1.23289 1.00944 0.93416 1.01563 0.84812 1.21606 0.94473 0.95901 1.02413 1.21533 1.01970 0.93691 0.98650 1.21744 0.93756 1.00344 1.00204 1.23688 1.01354 0.91932 1.04818 1.87522 1.60794 1.18468 1.38478 1.21379 1.07315 0.91584 1.13650 0.89570 0.86491 0.84318 0.73629 0.91172 0.91799 0.89981 0.89235 0.87686 0.91722 0.87605 0.85986 0.85898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -41.18 10.93 21.84 0.24 -40.94 16 2 C 0.04 1.82 5.20 85.29 0.44 2.26 16 3 Si 0.99 36.22 29.59 68.60 2.03 38.25 16 4 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.25 -8.90 7.11 99.48 0.71 -8.19 16 7 C -0.48 -25.03 9.12 23.52 0.21 -24.81 16 8 H 0.09 4.32 7.90 -2.91 -0.02 4.30 16 9 C 0.12 6.42 5.60 -21.11 -0.12 6.31 16 10 C -0.24 -13.28 8.79 22.84 0.20 -13.08 16 11 C 0.10 5.12 11.15 84.50 0.94 6.07 16 12 N -0.58 -31.09 7.85 -193.54 -1.52 -32.61 16 13 C 0.35 16.87 7.42 132.76 0.98 17.85 16 14 N -0.65 -24.64 5.39 -308.66 -1.66 -26.30 16 15 C 0.51 19.37 6.87 87.66 0.60 19.97 16 16 O -0.51 -24.23 14.50 -3.04 -0.04 -24.27 16 17 C -0.06 -1.55 2.91 29.88 0.09 -1.46 16 18 H 0.13 2.56 8.14 -2.39 -0.02 2.54 16 19 C -0.10 -2.39 4.59 30.49 0.14 -2.25 16 20 C -0.12 -1.66 5.61 30.32 0.17 -1.49 16 21 C -0.12 -1.47 5.75 30.48 0.18 -1.29 16 22 C -0.07 -0.94 6.45 72.01 0.46 -0.47 16 23 S -0.28 -6.83 21.68 -56.49 -1.22 -8.06 16 24 C -0.31 -15.45 9.73 22.99 0.22 -15.23 16 25 H 0.29 13.32 8.29 -92.71 -0.77 12.55 16 26 H 0.12 6.45 6.20 -2.91 -0.02 6.43 16 27 H 0.14 6.57 8.06 -2.91 -0.02 6.55 16 28 H 0.43 12.55 8.70 -92.71 -0.81 11.74 16 29 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.06 1.78 7.87 -2.39 -0.02 1.76 16 31 H 0.08 0.89 8.08 -2.39 -0.02 0.87 16 32 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.00 8.06 -2.39 -0.02 0.98 16 35 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.12 5.34 8.06 -2.91 -0.02 5.31 16 Total: -1.00 -70.94 320.50 2.63 -68.31 By element: Atomic # 1 Polarization: 32.98 SS G_CDS: 0.28 Total: 33.27 kcal Atomic # 6 Polarization: -12.18 SS G_CDS: 4.53 Total: -7.65 kcal Atomic # 7 Polarization: -96.91 SS G_CDS: -2.94 Total: -99.85 kcal Atomic # 8 Polarization: -24.23 SS G_CDS: -0.04 Total: -24.27 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Atomic # 16 Polarization: -6.83 SS G_CDS: -1.22 Total: -8.06 kcal Total: -70.94 2.63 -68.31 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336228790.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.803 kcal (2) G-P(sol) polarization free energy of solvation -70.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.313 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds