Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86806 * 119.99537 * 2 1 4 4 H 1.48500 * 109.47334 * 264.99769 * 3 2 1 5 5 H 1.48502 * 109.47183 * 25.00142 * 3 2 1 6 6 H 1.48504 * 109.46926 * 144.99809 * 3 2 1 7 7 C 1.40020 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00325 * 179.58023 * 7 2 1 9 9 C 1.41542 * 119.99835 * 359.58282 * 7 2 1 10 10 C 1.41182 * 120.99564 * 147.29261 * 9 7 2 11 11 C 1.37593 * 119.01574 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10408 * 359.97438 * 11 10 9 13 13 C 1.32460 * 122.23616 * 359.97438 * 12 11 10 14 14 N 1.39477 * 119.58004 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99889 * 354.25209 * 14 13 12 16 16 O 1.21276 * 120.00209 * 4.85826 * 15 14 13 17 17 C 1.50697 * 119.99944 * 184.85047 * 15 14 13 18 18 H 1.08993 * 109.57788 * 335.00143 * 17 15 14 19 19 C 1.53093 * 109.57809 * 214.74279 * 17 15 14 20 20 C 1.52585 * 109.95752 * 177.16869 * 19 17 15 21 21 C 1.52584 * 110.72422 * 70.67701 * 20 19 17 22 22 C 1.53090 * 109.95655 * 289.32663 * 21 20 19 23 23 S 1.81750 * 109.57422 * 95.26134 * 17 15 14 24 24 C 1.38599 * 120.84186 * 359.72068 * 13 12 11 25 25 H 0.96996 * 120.00123 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.49450 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.44203 * 180.02562 * 11 10 9 28 28 H 0.97004 * 119.99829 * 174.25029 * 14 13 12 29 29 H 1.08999 * 109.39356 * 297.32124 * 19 17 15 30 30 H 1.09008 * 109.38834 * 57.02394 * 19 17 15 31 31 H 1.09002 * 109.22627 * 190.99548 * 20 19 17 32 32 H 1.09001 * 109.22544 * 310.39880 * 20 19 17 33 33 H 1.09007 * 109.38771 * 49.47449 * 21 20 19 34 34 H 1.09000 * 109.38643 * 169.17288 * 21 20 19 35 35 H 1.09006 * 109.57700 * 182.83264 * 22 21 20 36 36 H 1.08995 * 109.57819 * 303.21486 * 22 21 20 37 37 H 1.07999 * 120.60305 * 180.30997 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.5946 1.9856 -1.3947 5 1 1.3899 2.6809 0.5917 6 1 3.4821 1.4732 0.8031 7 6 2.0077 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0074 9 6 1.3000 -2.4384 0.0078 10 6 1.8143 -3.5792 -0.6457 11 6 1.0921 -4.7499 -0.6122 12 7 -0.0662 -4.8192 0.0188 13 6 -0.5915 -3.7786 0.6478 14 7 -1.8185 -3.9140 1.2971 15 6 -2.5169 -5.0612 1.1854 16 8 -2.0398 -6.0066 0.5943 17 6 -3.8908 -5.1693 1.7951 18 1 -3.9811 -4.4622 2.6196 19 6 -4.1113 -6.5928 2.3137 20 6 -5.4726 -6.6935 2.9957 21 6 -6.5982 -6.6141 1.9686 22 6 -6.6931 -5.1934 1.4062 23 16 -5.1471 -4.7992 0.5350 24 6 0.0656 -2.5585 0.6744 25 1 -0.4850 0.8400 0.0004 26 1 2.7606 -3.5338 -1.1643 27 1 1.4793 -5.6269 -1.1095 28 1 -2.1691 -3.1825 1.8290 29 1 -4.0722 -7.2923 1.4787 30 1 -3.3284 -6.8423 3.0300 31 1 -5.5382 -7.6428 3.5275 32 1 -5.5788 -5.8751 3.7077 33 1 -6.3967 -7.3123 1.1561 34 1 -7.5422 -6.8786 2.4452 35 1 -7.5305 -5.1309 0.7111 36 1 -6.8404 -4.4865 2.2227 37 1 -0.3639 -1.7139 1.1927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336228791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -10.481159 kcal Electronic energy + Delta-G solvation = -20530.234242 eV Core-core repulsion = 17398.117650 eV Total energy + Delta-G solvation = -3132.116592 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.72407 -37.99957 -36.61438 -34.31959 -33.71711 -31.82385 -30.51746 -28.91474 -27.45252 -25.97691 -23.91510 -21.99222 -21.53599 -20.80563 -19.75043 -17.73979 -17.40834 -16.63238 -15.82264 -15.32522 -15.00945 -14.93142 -14.23787 -14.20341 -14.02199 -13.82349 -13.41000 -13.23920 -12.94408 -12.74186 -12.56902 -12.13839 -11.72322 -11.60072 -11.42243 -11.18182 -11.10213 -10.90893 -10.79267 -10.31309 -10.14434 -9.81517 -9.73201 -9.40356 -9.38390 -7.91035 -7.78351 -7.70903 -7.04723 -6.70831 -4.63458 1.36003 2.35349 2.61905 2.81217 3.03153 3.06993 3.20820 3.50142 3.57558 3.88680 4.43287 4.51918 4.66060 4.71539 4.73073 4.95413 5.03360 5.18790 5.35813 5.42582 5.61268 5.63353 5.75530 5.77143 5.89521 5.96847 6.14946 6.55093 6.61588 6.77179 6.95296 7.14049 7.34661 7.45014 7.75010 7.94361 8.18338 8.40832 8.68706 8.77067 8.81888 9.63482 10.16393 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.003801 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.869669 B = 7364.241396 C = 8124.525254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.074 3.926 3 Si 0.917 3.083 4 H -0.268 1.268 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.143 3.857 10 C -0.275 4.275 11 C 0.114 3.886 12 N -0.549 5.549 13 C 0.333 3.667 14 N -0.651 5.651 15 C 0.519 3.481 16 O -0.464 6.464 17 C -0.078 4.078 18 H 0.102 0.898 19 C -0.106 4.106 20 C -0.128 4.128 21 C -0.123 4.123 22 C -0.091 4.091 23 S -0.214 6.214 24 C -0.228 4.228 25 H 0.280 0.720 26 H 0.104 0.896 27 H 0.125 0.875 28 H 0.409 0.591 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.106 0.894 36 H 0.083 0.917 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -5.469 6.816 14.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.430 5.430 2 C -0.143 4.143 3 Si 0.742 3.258 4 H -0.193 1.193 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.099 0.901 9 C 0.134 3.866 10 C -0.299 4.299 11 C -0.040 4.040 12 N -0.267 5.267 13 C 0.108 3.892 14 N -0.297 5.297 15 C 0.301 3.699 16 O -0.334 6.334 17 C -0.210 4.210 18 H 0.120 0.880 19 C -0.145 4.145 20 C -0.165 4.165 21 C -0.162 4.162 22 C -0.239 4.239 23 S 0.012 5.988 24 C -0.253 4.253 25 H 0.091 0.909 26 H 0.122 0.878 27 H 0.142 0.858 28 H 0.244 0.756 29 H 0.107 0.893 30 H 0.095 0.905 31 H 0.093 0.907 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -12.252 -6.448 5.345 14.841 hybrid contribution 0.378 1.769 1.406 2.290 sum -11.874 -4.680 6.751 14.438 Atomic orbital electron populations 1.69716 1.07421 1.29117 1.36753 1.25912 0.94943 1.01306 0.92131 0.86183 0.80113 0.80110 0.79436 1.19346 1.20208 1.18602 1.19523 0.94629 0.89617 1.45429 0.90126 1.17605 0.90620 0.92062 0.86274 1.22022 1.03326 0.95809 1.08744 1.21781 0.90172 0.96175 0.95870 1.67184 1.14026 1.29926 1.15607 1.18216 0.85658 0.91132 0.94214 1.43379 1.19451 1.16569 1.50253 1.19620 0.85227 0.83579 0.81492 1.90788 1.68696 1.35964 1.37910 1.23381 0.95382 1.02261 0.99971 0.88014 1.21605 0.97318 0.93833 1.01733 1.21546 0.94052 1.02868 0.98068 1.21732 0.99133 0.95728 0.99577 1.23542 0.97523 0.99834 1.03019 1.87416 1.00480 1.87682 1.23234 1.21723 1.00259 0.95238 1.08114 0.90862 0.87811 0.85757 0.75607 0.89275 0.90482 0.90697 0.91741 0.90348 0.90878 0.87595 0.89815 0.84895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.10 10.73 55.55 0.60 -19.51 16 2 C 0.07 1.81 5.40 -17.34 -0.09 1.71 16 3 Si 0.92 18.22 29.56 -169.99 -5.02 13.20 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 5 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 6 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 7 C -0.46 -11.88 9.12 -37.66 -0.34 -12.22 16 8 H 0.08 1.99 7.85 -52.48 -0.41 1.58 16 9 C 0.14 3.77 5.57 -106.55 -0.59 3.18 16 10 C -0.28 -6.78 9.90 -38.70 -0.38 -7.16 16 11 C 0.11 2.77 11.15 -17.68 -0.20 2.57 16 12 N -0.55 -14.12 7.85 -12.52 -0.10 -14.22 16 13 C 0.33 8.16 7.41 -154.70 -1.15 7.01 16 14 N -0.65 -13.05 5.39 -11.49 -0.06 -13.11 16 15 C 0.52 9.99 6.81 -10.99 -0.07 9.92 16 16 O -0.46 -10.78 14.59 5.56 0.08 -10.70 16 17 C -0.08 -1.09 2.91 -27.84 -0.08 -1.17 16 18 H 0.10 1.18 8.09 -51.93 -0.42 0.76 16 19 C -0.11 -1.28 4.65 -26.90 -0.13 -1.40 16 20 C -0.13 -1.11 5.61 -27.16 -0.15 -1.27 16 21 C -0.12 -1.01 5.76 -26.90 -0.15 -1.17 16 22 C -0.09 -0.84 6.45 37.20 0.24 -0.60 16 23 S -0.21 -3.03 21.70 -107.50 -2.33 -5.36 16 24 C -0.23 -5.82 8.58 -38.48 -0.33 -6.15 16 25 H 0.28 6.41 8.29 -40.82 -0.34 6.07 16 26 H 0.10 2.33 8.06 -52.49 -0.42 1.91 16 27 H 0.12 2.62 8.06 -52.49 -0.42 2.19 16 28 H 0.41 6.82 8.66 -40.82 -0.35 6.46 16 29 H 0.09 1.23 7.86 -51.93 -0.41 0.82 16 30 H 0.08 0.93 8.14 -51.92 -0.42 0.50 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.51 8.08 -51.93 -0.42 0.09 16 33 H 0.08 0.72 8.06 -51.93 -0.42 0.30 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.13 3.38 6.29 -52.49 -0.33 3.05 16 LS Contribution 320.48 15.07 4.83 4.83 Total: -1.00 -31.33 320.48 -10.30 -41.64 By element: Atomic # 1 Polarization: 14.84 SS G_CDS: -4.86 Total: 9.99 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -3.44 Total: -6.76 kcal Atomic # 7 Polarization: -47.27 SS G_CDS: 0.44 Total: -46.84 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 18.22 SS G_CDS: -5.02 Total: 13.20 kcal Atomic # 16 Polarization: -3.03 SS G_CDS: -2.33 Total: -5.36 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -31.33 -10.30 -41.64 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336228791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.154 kcal (2) G-P(sol) polarization free energy of solvation -31.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds