Wall clock time and date at job start Tue Mar 31 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30750 * 1 3 3 Si 1.86806 * 119.99537 * 2 1 4 4 H 1.48500 * 109.47334 * 264.99769 * 3 2 1 5 5 H 1.48502 * 109.47183 * 25.00142 * 3 2 1 6 6 H 1.48504 * 109.46926 * 144.99809 * 3 2 1 7 7 C 1.40020 * 120.00362 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00325 * 179.58023 * 7 2 1 9 9 C 1.41542 * 119.99835 * 359.58282 * 7 2 1 10 10 C 1.41182 * 120.99564 * 147.29261 * 9 7 2 11 11 C 1.37593 * 119.01574 * 180.02562 * 10 9 7 12 12 N 1.32083 * 121.10408 * 359.97438 * 11 10 9 13 13 C 1.32460 * 122.23616 * 359.97438 * 12 11 10 14 14 N 1.39477 * 119.58004 * 180.02562 * 13 12 11 15 15 C 1.34773 * 119.99889 * 354.25209 * 14 13 12 16 16 O 1.21276 * 120.00209 * 4.85826 * 15 14 13 17 17 C 1.50697 * 119.99944 * 184.85047 * 15 14 13 18 18 H 1.08993 * 109.57788 * 335.00143 * 17 15 14 19 19 C 1.53093 * 109.57809 * 214.74279 * 17 15 14 20 20 C 1.52585 * 109.95752 * 177.16869 * 19 17 15 21 21 C 1.52584 * 110.72422 * 70.67701 * 20 19 17 22 22 C 1.53090 * 109.95655 * 289.32663 * 21 20 19 23 23 S 1.81750 * 109.57422 * 95.26134 * 17 15 14 24 24 C 1.38599 * 120.84186 * 359.72068 * 13 12 11 25 25 H 0.96996 * 120.00123 * 359.97438 * 1 2 3 26 26 H 1.08000 * 120.49450 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.44203 * 180.02562 * 11 10 9 28 28 H 0.97004 * 119.99829 * 174.25029 * 14 13 12 29 29 H 1.08999 * 109.39356 * 297.32124 * 19 17 15 30 30 H 1.09008 * 109.38834 * 57.02394 * 19 17 15 31 31 H 1.09002 * 109.22627 * 190.99548 * 20 19 17 32 32 H 1.09001 * 109.22544 * 310.39880 * 20 19 17 33 33 H 1.09007 * 109.38771 * 49.47449 * 21 20 19 34 34 H 1.09000 * 109.38643 * 169.17288 * 21 20 19 35 35 H 1.09006 * 109.57700 * 182.83264 * 22 21 20 36 36 H 1.08995 * 109.57819 * 303.21486 * 22 21 20 37 37 H 1.07999 * 120.60305 * 180.30997 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3075 0.0000 0.0000 3 14 2.2414 1.6179 0.0000 4 1 2.5946 1.9856 -1.3947 5 1 1.3899 2.6809 0.5917 6 1 3.4821 1.4732 0.8031 7 6 2.0077 -1.2126 -0.0005 8 1 3.0877 -1.2126 -0.0074 9 6 1.3000 -2.4384 0.0078 10 6 1.8143 -3.5792 -0.6457 11 6 1.0921 -4.7499 -0.6122 12 7 -0.0662 -4.8192 0.0188 13 6 -0.5915 -3.7786 0.6478 14 7 -1.8185 -3.9140 1.2971 15 6 -2.5169 -5.0612 1.1854 16 8 -2.0398 -6.0066 0.5943 17 6 -3.8908 -5.1693 1.7951 18 1 -3.9811 -4.4622 2.6196 19 6 -4.1113 -6.5928 2.3137 20 6 -5.4726 -6.6935 2.9957 21 6 -6.5982 -6.6141 1.9686 22 6 -6.6931 -5.1934 1.4062 23 16 -5.1471 -4.7992 0.5350 24 6 0.0656 -2.5585 0.6744 25 1 -0.4850 0.8400 0.0004 26 1 2.7606 -3.5338 -1.1643 27 1 1.4793 -5.6269 -1.1095 28 1 -2.1691 -3.1825 1.8290 29 1 -4.0722 -7.2923 1.4787 30 1 -3.3284 -6.8423 3.0300 31 1 -5.5382 -7.6428 3.5275 32 1 -5.5788 -5.8751 3.7077 33 1 -6.3967 -7.3123 1.1561 34 1 -7.5422 -6.8786 2.4452 35 1 -7.5305 -5.1309 0.7111 36 1 -6.8404 -4.4865 2.2227 37 1 -0.3639 -1.7139 1.1927 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336228791.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:22:18 Heat of formation + Delta-G solvation = -28.504862 kcal Electronic energy + Delta-G solvation = -20531.015808 eV Core-core repulsion = 17398.117650 eV Total energy + Delta-G solvation = -3132.898159 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.37959 -39.73108 -37.53763 -36.12328 -35.52001 -32.89650 -32.40792 -30.55545 -28.52186 -27.90542 -25.00087 -23.86620 -23.09208 -21.64623 -21.39714 -19.51812 -18.84443 -17.85239 -17.55849 -16.99562 -16.30901 -16.07883 -16.01253 -15.79889 -15.20772 -15.04839 -14.68240 -14.51762 -14.42178 -14.30797 -13.95517 -13.57123 -13.17736 -12.85208 -12.71627 -12.58664 -12.40697 -12.17430 -11.88629 -11.85985 -11.65825 -11.52400 -11.20784 -11.05854 -10.65961 -9.87564 -9.67346 -8.91145 -8.79730 -8.56147 -6.60384 0.20222 0.79923 0.98820 1.41475 1.45295 1.54150 1.55362 2.00314 2.02046 2.21693 2.83718 3.38609 3.53348 3.68772 3.81653 3.89513 4.05339 4.10805 4.22233 4.40749 4.63061 4.68726 4.72841 4.79544 4.88260 4.91922 5.00832 5.05697 5.09324 5.13651 5.24495 5.35088 5.43838 5.59205 5.91912 6.10082 6.41982 6.53301 6.77203 6.84458 7.17077 7.75856 8.33445 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024732 B = 0.003801 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.869669 B = 7364.241396 C = 8124.525254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.828 5.828 2 C 0.034 3.966 3 Si 0.992 3.008 4 H -0.265 1.265 5 H -0.266 1.266 6 H -0.257 1.257 7 C -0.489 4.489 8 H 0.084 0.916 9 C 0.114 3.886 10 C -0.288 4.288 11 C 0.109 3.891 12 N -0.573 5.573 13 C 0.329 3.671 14 N -0.646 5.646 15 C 0.516 3.484 16 O -0.510 6.510 17 C -0.060 4.060 18 H 0.131 0.869 19 C -0.104 4.104 20 C -0.121 4.121 21 C -0.121 4.121 22 C -0.070 4.070 23 S -0.287 6.287 24 C -0.245 4.245 25 H 0.289 0.711 26 H 0.120 0.880 27 H 0.152 0.848 28 H 0.422 0.578 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.081 0.919 33 H 0.064 0.936 34 H 0.106 0.894 35 H 0.121 0.879 36 H 0.104 0.896 37 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.566 -4.751 8.175 16.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.181 4.181 3 Si 0.813 3.187 4 H -0.190 1.190 5 H -0.190 1.190 6 H -0.181 1.181 7 C -0.520 4.520 8 H 0.102 0.898 9 C 0.106 3.894 10 C -0.311 4.311 11 C -0.045 4.045 12 N -0.293 5.293 13 C 0.103 3.897 14 N -0.293 5.293 15 C 0.300 3.700 16 O -0.382 6.382 17 C -0.191 4.191 18 H 0.149 0.851 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.160 4.160 22 C -0.217 4.217 23 S -0.061 6.061 24 C -0.270 4.270 25 H 0.100 0.900 26 H 0.138 0.862 27 H 0.169 0.831 28 H 0.260 0.740 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.111 0.889 32 H 0.100 0.900 33 H 0.083 0.917 34 H 0.124 0.876 35 H 0.139 0.861 36 H 0.122 0.878 37 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -13.848 -5.735 6.728 16.429 hybrid contribution 0.786 1.497 0.963 1.945 sum -13.062 -4.239 7.690 15.739 Atomic orbital electron populations 1.69774 1.08837 1.30610 1.36262 1.26816 0.95761 1.04500 0.90976 0.85055 0.78813 0.75347 0.79502 1.19010 1.19009 1.18050 1.19825 0.95036 0.90432 1.46698 0.89778 1.18042 0.91435 0.93092 0.86866 1.22215 1.04127 0.95652 1.09115 1.22254 0.89793 0.97067 0.95398 1.67316 1.14834 1.30545 1.16572 1.18468 0.86839 0.90643 0.93775 1.43441 1.18255 1.17696 1.49939 1.20542 0.86738 0.82289 0.80426 1.90753 1.70155 1.37354 1.39899 1.23268 0.91590 1.04379 0.99866 0.85128 1.21618 0.99847 0.91814 1.01006 1.21538 0.91622 1.04553 0.98117 1.21746 1.00417 0.94605 0.99223 1.23692 0.93832 1.00968 1.03224 1.87661 1.04368 1.88163 1.25907 1.21696 1.00741 0.95520 1.09046 0.89993 0.86244 0.83073 0.73973 0.91726 0.90677 0.88943 0.90041 0.91687 0.87598 0.86106 0.87754 0.85402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -41.67 10.73 21.84 0.23 -41.44 16 2 C 0.03 1.67 5.40 85.29 0.46 2.13 16 3 Si 0.99 36.74 29.56 68.60 2.03 38.77 16 4 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 5 H -0.27 -9.28 7.11 99.48 0.71 -8.57 16 6 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 7 C -0.49 -25.60 9.12 23.52 0.21 -25.38 16 8 H 0.08 4.19 7.85 -2.91 -0.02 4.17 16 9 C 0.11 6.18 5.57 -21.11 -0.12 6.06 16 10 C -0.29 -14.45 9.90 22.84 0.23 -14.23 16 11 C 0.11 5.35 11.15 84.50 0.94 6.29 16 12 N -0.57 -30.29 7.85 -193.53 -1.52 -31.81 16 13 C 0.33 16.60 7.41 132.75 0.98 17.58 16 14 N -0.65 -26.46 5.39 -308.67 -1.66 -28.12 16 15 C 0.52 20.20 6.81 87.66 0.60 20.79 16 16 O -0.51 -24.45 14.59 -3.02 -0.04 -24.49 16 17 C -0.06 -1.62 2.91 29.88 0.09 -1.53 16 18 H 0.13 2.74 8.09 -2.39 -0.02 2.73 16 19 C -0.10 -2.40 4.65 30.49 0.14 -2.26 16 20 C -0.12 -1.71 5.61 30.32 0.17 -1.54 16 21 C -0.12 -1.59 5.76 30.49 0.18 -1.41 16 22 C -0.07 -1.07 6.45 72.01 0.46 -0.61 16 23 S -0.29 -7.90 21.70 -56.49 -1.23 -9.13 16 24 C -0.24 -12.87 8.58 22.98 0.20 -12.68 16 25 H 0.29 13.13 8.29 -92.71 -0.77 12.37 16 26 H 0.12 5.44 8.06 -2.91 -0.02 5.41 16 27 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 28 H 0.42 14.26 8.66 -92.70 -0.80 13.46 16 29 H 0.06 1.81 7.86 -2.39 -0.02 1.79 16 30 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 31 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.08 0.93 8.08 -2.39 -0.02 0.91 16 33 H 0.06 1.06 8.06 -2.38 -0.02 1.04 16 34 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 36 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.13 6.72 6.29 -2.91 -0.02 6.70 16 Total: -1.00 -70.44 320.48 2.64 -67.80 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: 0.29 Total: 35.21 kcal Atomic # 6 Polarization: -11.33 SS G_CDS: 4.54 Total: -6.79 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -2.95 Total: -101.37 kcal Atomic # 8 Polarization: -24.45 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 14 Polarization: 36.74 SS G_CDS: 2.03 Total: 38.77 kcal Atomic # 16 Polarization: -7.90 SS G_CDS: -1.23 Total: -9.13 kcal Total: -70.44 2.64 -67.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336228791.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.292 kcal (2) G-P(sol) polarization free energy of solvation -70.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds