Wall clock time and date at job start Tue Mar 31 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47468 * 302.73397 * 3 2 1 5 5 N 1.46496 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00103 * 95.15647 * 5 4 3 7 7 C 1.50707 * 109.47024 * 95.10547 * 6 5 4 8 8 H 1.07992 * 119.99939 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99630 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99737 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47124 * 119.99544 * 11 9 7 14 14 H 1.48497 * 109.46929 * 239.99729 * 11 9 7 15 15 C 1.34779 * 120.00157 * 275.15497 * 5 4 3 16 16 O 1.21700 * 119.99764 * 4.97803 * 15 5 4 17 17 C 1.46672 * 120.00079 * 184.97468 * 15 5 4 18 18 C 1.37885 * 126.23148 * 187.03827 * 17 15 5 19 19 C 1.39835 * 107.08265 * 179.97438 * 18 17 15 20 20 N 1.48009 * 126.06683 * 180.02562 * 19 18 17 21 21 O 1.21811 * 119.99723 * 0.02562 * 20 19 18 22 22 O 1.21796 * 120.00218 * 180.02562 * 20 19 18 23 23 C 1.35458 * 107.86573 * 359.97438 * 19 18 17 24 24 N 1.35527 * 108.87008 * 359.76616 * 23 19 18 25 25 H 0.97003 * 125.67709 * 180.22901 * 24 23 19 26 26 H 1.09001 * 109.46730 * 182.73958 * 3 2 1 27 27 H 1.08997 * 109.47330 * 62.73950 * 3 2 1 28 28 H 1.09001 * 109.46687 * 60.00535 * 4 3 2 29 29 H 1.08997 * 109.47297 * 300.00573 * 4 3 2 30 30 H 1.08998 * 109.47683 * 215.10422 * 6 5 4 31 31 H 1.08997 * 109.47211 * 335.11124 * 6 5 4 32 32 H 0.96997 * 119.99712 * 179.97438 * 10 9 7 33 33 H 1.07993 * 126.45742 * 359.96027 * 18 17 15 34 34 H 1.08001 * 125.56013 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7791 1.2134 5 7 4.5834 -0.7779 1.2137 6 6 5.3149 0.2238 1.9932 7 6 5.6757 -0.3519 3.3384 8 1 5.3892 -1.3629 3.5876 9 6 6.3717 0.4123 4.2510 10 7 6.7211 1.6433 3.9474 11 14 6.8196 -0.3015 5.9182 12 1 6.3156 -1.6952 6.0115 13 1 8.2960 -0.2968 6.0781 14 1 6.2029 0.5203 6.9903 15 6 5.2582 -1.6984 0.4969 16 8 4.6539 -2.4729 -0.2216 17 6 6.7208 -1.7668 0.5827 18 6 7.5463 -2.5575 -0.1883 19 6 8.8583 -2.3082 0.2261 20 7 10.0803 -2.9358 -0.3248 21 8 9.9930 -3.7521 -1.2246 22 8 11.1732 -2.6359 0.1215 23 6 8.8125 -1.3895 1.2206 24 7 7.5199 -1.0483 1.4429 25 1 7.2093 -0.4067 2.1007 26 1 2.9708 1.0273 0.0491 27 1 2.9715 -0.4699 -0.9135 28 1 2.7556 -1.8058 1.1643 29 1 2.7548 -0.3086 2.1269 30 1 6.2245 0.5041 1.4622 31 1 4.6885 1.1050 2.1314 32 1 7.2103 2.1809 4.5895 33 1 7.2377 -3.2408 -0.9656 34 1 9.6670 -0.9907 1.7471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343886317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:34 Heat of formation + Delta-G solvation = 39.797830 kcal Electronic energy + Delta-G solvation = -22898.926880 eV Core-core repulsion = 19222.697334 eV Total energy + Delta-G solvation = -3676.229546 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.06266 -41.08356 -39.10215 -36.82211 -36.10709 -35.83643 -33.66220 -32.04226 -31.12440 -29.58249 -27.90304 -26.05417 -24.51293 -23.79241 -21.70070 -20.88790 -19.99829 -18.26608 -18.05186 -17.67185 -17.15879 -17.07255 -16.62307 -15.99526 -15.63854 -15.02204 -14.92596 -14.62808 -14.03019 -13.63459 -13.44864 -13.18973 -12.90499 -12.71017 -12.55238 -12.42619 -11.97441 -11.69384 -11.47433 -11.25380 -11.21313 -10.94707 -10.85723 -10.78445 -10.69608 -10.34305 -9.86005 -9.46993 -9.19653 -8.63558 -8.31312 -6.86526 -5.03621 0.66905 1.53069 1.81906 2.57191 2.68881 2.80536 2.84389 2.97579 2.99999 3.14114 3.45856 3.55536 3.81901 4.15078 4.44887 4.71972 4.92276 4.98842 5.09003 5.14723 5.43855 5.46895 5.71058 5.80375 5.93737 6.00639 6.18162 6.41019 6.50983 6.83555 6.89077 7.11232 7.24260 7.52735 7.55955 7.63522 8.10405 8.13402 8.37222 8.70265 10.15151 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.006265 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.813772 B = 4467.960718 C = 6709.128508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.445 5.445 2 C 0.219 3.781 3 C -0.047 4.047 4 C 0.130 3.870 5 N -0.594 5.594 6 C 0.214 3.786 7 C -0.574 4.574 8 H 0.076 0.924 9 C 0.068 3.932 10 N -0.873 5.873 11 Si 0.899 3.101 12 H -0.266 1.266 13 H -0.275 1.275 14 H -0.274 1.274 15 C 0.592 3.408 16 O -0.543 6.543 17 C -0.018 4.018 18 C -0.073 4.073 19 C -0.144 4.144 20 N 0.071 4.929 21 O -0.178 6.178 22 O -0.187 6.187 23 C 0.104 3.896 24 N -0.480 5.480 25 H 0.462 0.538 26 H 0.112 0.888 27 H 0.114 0.886 28 H 0.085 0.915 29 H 0.094 0.906 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.278 0.722 33 H 0.167 0.833 34 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 -0.162 -2.647 2.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.123 5.123 2 C -0.099 4.099 3 C -0.088 4.088 4 C 0.005 3.995 5 N -0.324 5.324 6 C 0.093 3.907 7 C -0.612 4.612 8 H 0.094 0.906 9 C -0.140 4.140 10 N -0.508 5.508 11 Si 0.724 3.276 12 H -0.190 1.190 13 H -0.200 1.200 14 H -0.199 1.199 15 C 0.380 3.620 16 O -0.421 6.421 17 C -0.133 4.133 18 C -0.098 4.098 19 C -0.237 4.237 20 N 0.585 4.415 21 O -0.391 6.391 22 O -0.398 6.398 23 C -0.045 4.045 24 N -0.093 5.093 25 H 0.327 0.673 26 H 0.130 0.870 27 H 0.132 0.868 28 H 0.103 0.897 29 H 0.112 0.888 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.088 0.912 33 H 0.185 0.815 34 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.495 0.105 -2.519 2.932 hybrid contribution 1.059 0.002 1.231 1.624 sum -0.436 0.107 -1.288 1.364 Atomic orbital electron populations 1.81200 1.13016 1.09211 1.08842 1.29026 0.95040 0.92816 0.93011 1.19769 0.81541 1.04565 1.02952 1.21199 0.80090 1.01434 0.96781 1.48001 1.05925 1.31652 1.46780 1.19890 0.92776 0.87889 0.90143 1.21745 1.38306 1.01555 0.99618 0.90558 1.25154 0.94961 0.94588 0.99317 1.69914 1.36332 1.07689 1.36829 0.86363 0.78834 0.79909 0.82457 1.19020 1.19993 1.19920 1.16844 0.84429 0.80708 0.79980 1.90810 1.68401 1.42424 1.40486 1.20384 0.92042 1.02038 0.98829 1.20930 0.88030 1.00198 1.00690 1.20146 0.85522 1.09982 1.08028 1.42639 1.01568 0.98540 0.98764 1.94510 1.93705 1.28423 1.22433 1.94499 1.14291 1.67388 1.63577 1.21907 0.89656 0.96203 0.96695 1.44878 1.04299 1.31592 1.28523 0.67294 0.87037 0.86824 0.89689 0.88774 0.94581 0.92392 0.91189 0.81532 0.79087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -6.79 18.54 42.15 0.78 -6.00 16 2 C 0.22 2.78 15.43 -20.76 -0.32 2.46 16 3 C -0.05 -0.51 5.99 -29.52 -0.18 -0.69 16 4 C 0.13 1.71 5.25 -4.04 -0.02 1.69 16 5 N -0.59 -9.38 2.48 -176.61 -0.44 -9.81 16 6 C 0.21 3.76 4.68 -5.19 -0.02 3.73 16 7 C -0.57 -11.39 7.11 -34.44 -0.24 -11.63 16 8 H 0.08 1.60 7.81 -52.49 -0.41 1.19 16 9 C 0.07 1.39 5.01 -17.82 -0.09 1.30 16 10 N -0.87 -18.63 13.29 55.43 0.74 -17.90 16 11 Si 0.90 16.83 29.54 -169.99 -5.02 11.81 16 12 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 13 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 14 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 15 C 0.59 10.14 7.56 -12.86 -0.10 10.04 16 16 O -0.54 -10.01 16.55 5.19 0.09 -9.93 16 17 C -0.02 -0.30 6.61 -81.98 -0.54 -0.85 16 18 C -0.07 -1.19 10.39 -39.11 -0.41 -1.60 16 19 C -0.14 -2.35 7.11 -80.35 -0.57 -2.92 16 20 N 0.07 1.23 4.45 33.77 0.15 1.38 16 21 O -0.18 -3.17 19.05 -29.46 -0.56 -3.74 16 22 O -0.19 -3.25 19.02 -29.46 -0.56 -3.81 16 23 C 0.10 1.57 11.57 -16.91 -0.20 1.38 16 24 N -0.48 -7.89 4.76 -9.39 -0.04 -7.94 16 25 H 0.46 8.11 3.14 -40.82 -0.13 7.99 16 26 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.11 1.22 8.08 -51.93 -0.42 0.80 16 28 H 0.08 1.15 7.66 -51.93 -0.40 0.75 16 29 H 0.09 1.19 8.03 -51.93 -0.42 0.78 16 30 H 0.04 0.66 5.42 -51.93 -0.28 0.38 16 31 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 32 H 0.28 5.71 8.31 -40.82 -0.34 5.37 16 33 H 0.17 2.54 8.06 -52.49 -0.42 2.12 16 34 H 0.19 2.34 8.06 -52.49 -0.42 1.91 16 LS Contribution 316.45 15.07 4.77 4.77 Total: -1.00 -24.33 316.45 -5.67 -30.00 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.87 Total: 8.26 kcal Atomic # 6 Polarization: 5.60 SS G_CDS: -2.69 Total: 2.91 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 1.19 Total: -40.28 kcal Atomic # 8 Polarization: -16.43 SS G_CDS: -1.04 Total: -17.47 kcal Atomic # 14 Polarization: 16.83 SS G_CDS: -5.02 Total: 11.81 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -24.33 -5.67 -30.00 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343886317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.795 kcal (2) G-P(sol) polarization free energy of solvation -24.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds