Wall clock time and date at job start Tue Mar 31 2020 06:20:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47468 * 302.73397 * 3 2 1 5 5 N 1.46496 * 109.47363 * 180.02562 * 4 3 2 6 6 C 1.46494 * 120.00103 * 95.15647 * 5 4 3 7 7 C 1.50707 * 109.47024 * 95.10547 * 6 5 4 8 8 H 1.07992 * 119.99939 * 0.02562 * 7 6 5 9 9 C 1.37880 * 119.99630 * 180.02562 * 7 6 5 10 10 N 1.31517 * 120.00311 * 359.97438 * 9 7 6 11 11 Si 1.86805 * 119.99737 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.46832 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47124 * 119.99544 * 11 9 7 14 14 H 1.48497 * 109.46929 * 239.99729 * 11 9 7 15 15 C 1.34779 * 120.00157 * 275.15497 * 5 4 3 16 16 O 1.21700 * 119.99764 * 4.97803 * 15 5 4 17 17 C 1.46672 * 120.00079 * 184.97468 * 15 5 4 18 18 C 1.37885 * 126.23148 * 187.03827 * 17 15 5 19 19 C 1.39835 * 107.08265 * 179.97438 * 18 17 15 20 20 N 1.48009 * 126.06683 * 180.02562 * 19 18 17 21 21 O 1.21811 * 119.99723 * 0.02562 * 20 19 18 22 22 O 1.21796 * 120.00218 * 180.02562 * 20 19 18 23 23 C 1.35458 * 107.86573 * 359.97438 * 19 18 17 24 24 N 1.35527 * 108.87008 * 359.76616 * 23 19 18 25 25 H 0.97003 * 125.67709 * 180.22901 * 24 23 19 26 26 H 1.09001 * 109.46730 * 182.73958 * 3 2 1 27 27 H 1.08997 * 109.47330 * 62.73950 * 3 2 1 28 28 H 1.09001 * 109.46687 * 60.00535 * 4 3 2 29 29 H 1.08997 * 109.47297 * 300.00573 * 4 3 2 30 30 H 1.08998 * 109.47683 * 215.10422 * 6 5 4 31 31 H 1.08997 * 109.47211 * 335.11124 * 6 5 4 32 32 H 0.96997 * 119.99712 * 179.97438 * 10 9 7 33 33 H 1.07993 * 126.45742 * 359.96027 * 18 17 15 34 34 H 1.08001 * 125.56013 * 180.02562 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1184 -0.7791 1.2134 5 7 4.5834 -0.7779 1.2137 6 6 5.3149 0.2238 1.9932 7 6 5.6757 -0.3519 3.3384 8 1 5.3892 -1.3629 3.5876 9 6 6.3717 0.4123 4.2510 10 7 6.7211 1.6433 3.9474 11 14 6.8196 -0.3015 5.9182 12 1 6.3156 -1.6952 6.0115 13 1 8.2960 -0.2968 6.0781 14 1 6.2029 0.5203 6.9903 15 6 5.2582 -1.6984 0.4969 16 8 4.6539 -2.4729 -0.2216 17 6 6.7208 -1.7668 0.5827 18 6 7.5463 -2.5575 -0.1883 19 6 8.8583 -2.3082 0.2261 20 7 10.0803 -2.9358 -0.3248 21 8 9.9930 -3.7521 -1.2246 22 8 11.1732 -2.6359 0.1215 23 6 8.8125 -1.3895 1.2206 24 7 7.5199 -1.0483 1.4429 25 1 7.2093 -0.4067 2.1007 26 1 2.9708 1.0273 0.0491 27 1 2.9715 -0.4699 -0.9135 28 1 2.7556 -1.8058 1.1643 29 1 2.7548 -0.3086 2.1269 30 1 6.2245 0.5041 1.4622 31 1 4.6885 1.1050 2.1314 32 1 7.2103 2.1809 4.5895 33 1 7.2377 -3.2408 -0.9656 34 1 9.6670 -0.9907 1.7471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343886317.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:34 Heat of formation + Delta-G solvation = 28.914391 kcal Electronic energy + Delta-G solvation = -22899.398822 eV Core-core repulsion = 19222.697334 eV Total energy + Delta-G solvation = -3676.701487 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.100 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.37640 -42.41004 -40.39915 -37.96328 -37.46581 -37.16540 -35.08396 -33.32500 -32.34945 -30.86996 -29.32867 -27.36834 -25.68467 -25.26859 -22.95582 -22.19909 -21.28423 -19.59941 -19.38738 -18.88512 -18.48057 -18.44331 -17.94747 -17.26916 -16.92802 -16.40766 -16.22670 -15.76923 -15.23956 -14.90588 -14.72559 -14.46537 -14.36480 -13.93479 -13.69455 -13.57366 -13.33151 -12.99909 -12.82025 -12.67441 -12.58646 -12.31234 -12.23441 -12.16176 -11.86320 -11.84018 -11.23031 -10.86681 -10.65774 -9.95527 -9.61091 -8.42823 -6.62152 -0.67575 0.23633 0.50081 1.28230 1.35657 1.46608 1.50939 1.60932 1.78290 1.89400 2.17980 2.22478 2.33637 2.88166 3.11527 3.44870 3.64635 3.83555 4.06565 4.08051 4.21438 4.48752 4.51040 4.58597 4.81472 4.89276 4.97137 5.02632 5.22404 5.48432 5.52176 5.61899 5.74175 6.19285 6.27150 6.54491 6.59366 6.73188 7.02514 7.14784 8.58104 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010580 B = 0.006265 C = 0.004172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.813772 B = 4467.960718 C = 6709.128508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C 0.245 3.755 3 C -0.033 4.033 4 C 0.125 3.875 5 N -0.588 5.588 6 C 0.222 3.778 7 C -0.572 4.572 8 H 0.062 0.938 9 C 0.045 3.955 10 N -0.891 5.891 11 Si 0.937 3.063 12 H -0.276 1.276 13 H -0.271 1.271 14 H -0.280 1.280 15 C 0.590 3.410 16 O -0.560 6.560 17 C -0.032 4.032 18 C -0.071 4.071 19 C -0.154 4.154 20 N 0.072 4.928 21 O -0.199 6.199 22 O -0.182 6.182 23 C 0.121 3.879 24 N -0.486 5.486 25 H 0.460 0.540 26 H 0.135 0.865 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.037 0.963 31 H 0.058 0.942 32 H 0.279 0.721 33 H 0.173 0.827 34 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 0.292 -2.463 3.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.168 5.168 2 C -0.072 4.072 3 C -0.074 4.074 4 C 0.001 3.999 5 N -0.318 5.318 6 C 0.101 3.899 7 C -0.611 4.611 8 H 0.081 0.919 9 C -0.161 4.161 10 N -0.527 5.527 11 Si 0.763 3.237 12 H -0.200 1.200 13 H -0.196 1.196 14 H -0.205 1.205 15 C 0.379 3.621 16 O -0.440 6.440 17 C -0.146 4.146 18 C -0.096 4.096 19 C -0.247 4.247 20 N 0.584 4.416 21 O -0.407 6.407 22 O -0.395 6.395 23 C -0.028 4.028 24 N -0.098 5.098 25 H 0.323 0.677 26 H 0.152 0.848 27 H 0.138 0.862 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.054 0.946 31 H 0.076 0.924 32 H 0.089 0.911 33 H 0.190 0.810 34 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -0.990 0.531 -2.369 2.622 hybrid contribution 0.933 -0.145 1.206 1.532 sum -0.057 0.386 -1.162 1.226 Atomic orbital electron populations 1.81231 1.14397 1.10839 1.10305 1.29193 0.95058 0.91367 0.91626 1.19730 0.80115 1.05563 1.02012 1.21326 0.78620 1.01752 0.98184 1.47944 1.06829 1.30939 1.46039 1.19709 0.92940 0.87933 0.89313 1.21780 1.37898 1.00848 1.00538 0.91948 1.25473 0.95137 0.94740 1.00729 1.69941 1.37155 1.08208 1.37400 0.85786 0.78655 0.78674 0.80565 1.20041 1.19583 1.20526 1.16910 0.84603 0.80662 0.79916 1.90800 1.68769 1.43074 1.41317 1.20412 0.92132 1.02675 0.99411 1.21059 0.88096 0.99904 1.00550 1.20188 0.85117 1.10659 1.08719 1.42730 1.01783 0.98446 0.98654 1.94514 1.93822 1.29204 1.23124 1.94484 1.14585 1.67096 1.63297 1.22372 0.89861 0.94885 0.95719 1.44798 1.04777 1.31666 1.28532 0.67667 0.84754 0.86153 0.90152 0.88172 0.94568 0.92358 0.91099 0.80954 0.76210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -14.51 18.54 20.00 0.37 -14.14 16 2 C 0.24 5.84 15.43 89.44 1.38 7.22 16 3 C -0.03 -0.65 5.99 28.79 0.17 -0.48 16 4 C 0.13 3.10 5.25 86.38 0.45 3.55 16 5 N -0.59 -17.70 2.48 -830.88 -2.06 -19.76 16 6 C 0.22 7.46 4.68 85.64 0.40 7.86 16 7 C -0.57 -21.95 7.11 25.60 0.18 -21.77 16 8 H 0.06 2.56 7.81 -2.91 -0.02 2.54 16 9 C 0.05 1.79 5.01 84.65 0.42 2.21 16 10 N -0.89 -36.71 13.29 21.45 0.28 -36.42 16 11 Si 0.94 33.45 29.54 68.60 2.03 35.47 16 12 H -0.28 -10.19 7.11 99.48 0.71 -9.48 16 13 H -0.27 -9.44 7.11 99.48 0.71 -8.73 16 14 H -0.28 -10.19 7.11 99.48 0.71 -9.49 16 15 C 0.59 19.49 7.56 86.44 0.65 20.14 16 16 O -0.56 -20.05 16.55 -4.35 -0.07 -20.12 16 17 C -0.03 -1.04 6.61 40.35 0.27 -0.78 16 18 C -0.07 -2.21 10.39 22.57 0.23 -1.98 16 19 C -0.15 -4.77 7.11 36.12 0.26 -4.51 16 20 N 0.07 2.39 4.45 -47.08 -0.21 2.18 16 21 O -0.20 -6.92 19.05 18.87 0.36 -6.57 16 22 O -0.18 -5.97 19.02 18.89 0.36 -5.61 16 23 C 0.12 3.37 11.57 83.48 0.97 4.34 16 24 N -0.49 -15.14 4.76 -183.62 -0.87 -16.01 16 25 H 0.46 15.37 3.14 -92.71 -0.29 15.08 16 26 H 0.13 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.12 2.31 8.08 -2.39 -0.02 2.29 16 28 H 0.08 2.09 7.66 -2.39 -0.02 2.07 16 29 H 0.10 2.37 8.03 -2.39 -0.02 2.35 16 30 H 0.04 1.26 5.42 -2.39 -0.01 1.24 16 31 H 0.06 1.98 8.03 -2.39 -0.02 1.96 16 32 H 0.28 11.08 8.31 -92.71 -0.77 10.31 16 33 H 0.17 5.10 8.06 -2.91 -0.02 5.08 16 34 H 0.22 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -49.65 316.45 6.46 -43.19 By element: Atomic # 1 Polarization: 21.09 SS G_CDS: 0.88 Total: 21.98 kcal Atomic # 6 Polarization: 10.42 SS G_CDS: 5.39 Total: 15.81 kcal Atomic # 7 Polarization: -81.67 SS G_CDS: -2.49 Total: -84.16 kcal Atomic # 8 Polarization: -32.94 SS G_CDS: 0.65 Total: -32.30 kcal Atomic # 14 Polarization: 33.45 SS G_CDS: 2.03 Total: 35.47 kcal Total: -49.65 6.46 -43.19 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343886317.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.109 kcal (2) G-P(sol) polarization free energy of solvation -49.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.458 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds