Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34821 * 125.64207 * 2 1 4 4 C 1.40790 * 107.07633 * 179.76173 * 3 2 1 5 5 C 1.36260 * 106.72038 * 0.35769 * 4 3 2 6 6 C 1.47107 * 125.95910 * 179.91043 * 5 4 3 7 7 N 1.30488 * 125.48100 * 359.67003 * 6 5 4 8 8 C 1.31332 * 116.96877 * 179.78920 * 7 6 5 9 9 C 1.33688 * 115.87215 * 0.46102 * 8 7 6 10 10 C 1.50703 * 125.86546 * 179.84254 * 9 8 7 11 11 N 1.46899 * 109.47107 * 89.71260 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47092 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99873 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47069 * 60.00160 * 18 16 14 20 20 H 1.48505 * 109.46532 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99864 * 18 16 14 22 22 S 1.76170 * 125.48479 * 179.71140 * 6 5 4 23 23 O 1.34279 * 125.63958 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46852 * 300.00072 * 1 2 3 26 26 H 1.09001 * 109.47212 * 59.99535 * 1 2 3 27 27 H 1.08001 * 126.46193 * 0.02562 * 3 2 1 28 28 H 1.07998 * 126.63797 * 180.26365 * 4 3 2 29 29 H 1.08000 * 122.06375 * 180.26538 * 8 7 6 30 30 H 1.09002 * 109.47152 * 329.71348 * 10 9 8 31 31 H 1.09001 * 109.46980 * 209.71448 * 10 9 8 32 32 H 1.00908 * 110.99847 * 56.05051 * 11 10 9 33 33 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 34 34 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 35 35 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 36 36 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 37 37 H 0.96998 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0957 0.0000 4 6 3.6272 0.6474 0.0056 5 6 3.5834 -0.7145 0.0006 6 6 4.7457 -1.6162 0.0018 7 7 5.9954 -1.2409 0.0018 8 6 6.9025 -2.1906 0.0073 9 6 6.4356 -3.4433 0.0027 10 6 7.2716 -4.6972 0.0040 11 7 7.5426 -5.1035 1.3894 12 6 8.3567 -6.3257 1.4299 13 6 8.6171 -6.7170 2.8859 14 6 9.4527 -7.9703 2.9275 15 1 9.7671 -8.4406 2.0074 16 6 9.8160 -8.5168 4.1401 17 7 9.4336 -7.9441 5.2605 18 14 10.8525 -10.0701 4.1915 19 1 12.1469 -9.8243 3.5067 20 1 11.1050 -10.4500 5.6048 21 1 10.1298 -11.1704 3.5042 22 16 4.6744 -3.3764 0.0025 23 8 2.2894 -1.0913 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.9607 2.1234 0.0004 28 1 4.5141 1.2637 0.0111 29 1 7.9604 -1.9731 0.0120 30 1 8.2139 -4.5062 -0.5096 31 1 6.7328 -5.4936 -0.5094 32 1 6.6839 -5.2242 1.9055 33 1 7.8252 -7.1331 0.9265 34 1 9.3065 -6.1463 0.9261 35 1 9.1485 -5.9095 3.3898 36 1 7.6671 -6.8964 3.3894 37 1 9.6895 -8.3283 6.1135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344329706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = 51.018176 kcal Electronic energy + Delta-G solvation = -19104.436939 eV Core-core repulsion = 15974.987159 eV Total energy + Delta-G solvation = -3129.449781 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.88204 -39.57881 -36.25573 -33.58226 -33.35542 -32.67064 -31.15925 -29.20373 -27.59123 -25.24039 -24.19818 -23.00697 -22.15880 -21.07854 -20.66547 -19.60258 -18.09500 -16.91516 -16.65187 -16.35067 -15.60125 -14.91298 -14.69963 -14.51851 -14.42257 -13.90152 -13.72957 -13.50054 -13.34134 -13.21036 -13.13847 -12.70225 -12.30716 -12.18328 -11.93706 -11.35046 -11.05152 -10.94028 -10.61018 -10.34451 -10.08389 -9.87499 -9.76571 -9.42201 -9.35321 -9.18196 -8.37720 -8.12134 -7.95440 -6.01578 -4.04827 0.10015 1.07332 1.51299 1.56398 2.21408 2.25680 2.92807 3.32274 3.36819 3.38906 3.99807 4.41180 4.49152 4.67816 4.69855 4.77515 4.90867 4.97707 5.02583 5.16014 5.25469 5.34232 5.46435 5.61931 5.65893 5.70789 5.76697 6.04422 6.17147 6.23180 6.29256 6.71047 6.89573 7.32097 7.52398 7.65050 7.72175 7.85577 8.03519 8.39218 9.02003 9.59054 11.09742 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.002345 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.986644 B =11937.633854 C =12213.008479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.007 3.993 3 C -0.214 4.214 4 C -0.135 4.135 5 C 0.039 3.961 6 C 0.126 3.874 7 N -0.447 5.447 8 C 0.052 3.948 9 C -0.189 4.189 10 C 0.131 3.869 11 N -0.685 5.685 12 C 0.065 3.935 13 C 0.025 3.975 14 C -0.524 4.524 15 H 0.054 0.946 16 C 0.058 3.942 17 N -0.893 5.893 18 Si 0.894 3.106 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.277 1.277 22 S 0.110 5.890 23 O -0.167 6.167 24 H 0.078 0.922 25 H 0.089 0.911 26 H 0.089 0.911 27 H 0.155 0.845 28 H 0.160 0.840 29 H 0.183 0.817 30 H 0.095 0.905 31 H 0.040 0.960 32 H 0.338 0.662 33 H 0.018 0.982 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.014 0.986 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.961 17.036 -13.365 27.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.045 4.045 3 C -0.234 4.234 4 C -0.159 4.159 5 C -0.014 4.014 6 C -0.147 4.147 7 N -0.163 5.163 8 C -0.101 4.101 9 C -0.311 4.311 10 C 0.000 4.000 11 N -0.317 5.317 12 C -0.062 4.062 13 C -0.012 4.012 14 C -0.563 4.563 15 H 0.073 0.927 16 C -0.144 4.144 17 N -0.531 5.531 18 Si 0.722 3.278 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.203 1.203 22 S 0.366 5.634 23 O -0.063 6.063 24 H 0.097 0.903 25 H 0.108 0.892 26 H 0.107 0.893 27 H 0.173 0.827 28 H 0.177 0.823 29 H 0.200 0.800 30 H 0.113 0.887 31 H 0.058 0.942 32 H 0.156 0.844 33 H 0.037 0.963 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.032 0.968 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -17.158 16.855 -13.106 27.391 hybrid contribution 0.919 -1.222 -0.064 1.530 sum -16.239 15.633 -13.170 26.107 Atomic orbital electron populations 1.20387 0.84513 1.04431 1.03915 1.22663 0.94075 0.83729 1.04041 1.21567 0.92344 0.99726 1.09724 1.21886 0.98516 0.92558 1.02959 1.18533 0.80336 0.91431 1.11125 1.23763 0.91771 0.92254 1.06944 1.66497 0.98169 1.36443 1.15160 1.21537 1.00263 0.86111 1.02158 1.26094 0.95110 1.00700 1.09163 1.20357 0.97185 0.89820 0.92657 1.60716 1.23256 1.37770 1.09944 1.22225 0.95445 0.86769 1.01808 1.19068 0.96963 0.96328 0.88839 1.21115 1.32965 1.09890 0.92280 0.92743 1.25009 0.96200 0.97443 0.95713 1.69956 1.45790 1.40030 0.97366 0.86631 0.80814 0.83429 0.76951 1.20189 1.21253 1.20279 1.85114 1.04426 1.05170 1.68649 1.84004 1.15293 1.35114 1.71912 0.90298 0.89212 0.89272 0.82692 0.82271 0.79998 0.88708 0.94198 0.84442 0.96344 0.91919 0.95527 0.96777 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.36 10.41 36.00 0.37 0.02 16 2 C 0.01 0.06 7.31 -35.52 -0.26 -0.20 16 3 C -0.21 -1.87 10.78 -39.83 -0.43 -2.30 16 4 C -0.14 -1.47 10.80 -39.33 -0.42 -1.90 16 5 C 0.04 0.49 7.22 -36.70 -0.26 0.22 16 6 C 0.13 1.73 7.46 -14.53 -0.11 1.62 16 7 N -0.45 -6.39 10.52 -11.54 -0.12 -6.51 16 8 C 0.05 0.70 11.14 -19.36 -0.22 0.48 16 9 C -0.19 -2.57 6.10 -35.90 -0.22 -2.79 16 10 C 0.13 1.85 6.21 -4.98 -0.03 1.81 16 11 N -0.69 -12.07 6.49 -115.05 -0.75 -12.82 16 12 C 0.07 1.34 5.62 -3.82 -0.02 1.32 16 13 C 0.03 0.66 5.23 -27.89 -0.15 0.52 16 14 C -0.52 -14.80 9.11 -34.44 -0.31 -15.11 16 15 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 16 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 17 N -0.89 -26.97 13.29 55.43 0.74 -26.23 16 18 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 S 0.11 1.42 23.42 -107.50 -2.52 -1.09 16 23 O -0.17 -1.97 10.67 4.48 0.05 -1.92 16 24 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.09 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.16 0.91 8.06 -52.49 -0.42 0.49 16 28 H 0.16 1.58 8.06 -52.49 -0.42 1.16 16 29 H 0.18 2.14 8.06 -52.49 -0.42 1.71 16 30 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.34 5.95 8.72 -39.29 -0.34 5.61 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 LS Contribution 340.33 15.07 5.13 5.13 Total: -1.00 -31.94 340.33 -9.61 -41.55 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -4.96 Total: 0.00 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.16 Total: -14.72 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: -0.13 Total: -45.56 kcal Atomic # 8 Polarization: -1.97 SS G_CDS: 0.05 Total: -1.92 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.52 Total: -1.09 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.94 -9.61 -41.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344329706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.568 kcal (2) G-P(sol) polarization free energy of solvation -31.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.550 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds