Wall clock time and date at job start Tue Mar 31 2020 06:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34821 * 125.64207 * 2 1 4 4 C 1.40790 * 107.07633 * 179.76173 * 3 2 1 5 5 C 1.36260 * 106.72038 * 0.35769 * 4 3 2 6 6 C 1.47107 * 125.95910 * 179.91043 * 5 4 3 7 7 N 1.30488 * 125.48100 * 359.67003 * 6 5 4 8 8 C 1.31332 * 116.96877 * 179.78920 * 7 6 5 9 9 C 1.33688 * 115.87215 * 0.46102 * 8 7 6 10 10 C 1.50703 * 125.86546 * 179.84254 * 9 8 7 11 11 N 1.46899 * 109.47107 * 89.71260 * 10 9 8 12 12 C 1.46904 * 111.00029 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.46950 * 180.02562 * 12 11 10 14 14 C 1.50698 * 109.47092 * 180.02562 * 13 12 11 15 15 H 1.08009 * 119.99873 * 0.02562 * 14 13 12 16 16 C 1.37879 * 120.00054 * 180.02562 * 14 13 12 17 17 N 1.31504 * 120.00303 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99645 * 180.02562 * 16 14 13 19 19 H 1.48495 * 109.47069 * 60.00160 * 18 16 14 20 20 H 1.48505 * 109.46532 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47146 * 299.99864 * 18 16 14 22 22 S 1.76170 * 125.48479 * 179.71140 * 6 5 4 23 23 O 1.34279 * 125.63958 * 179.97438 * 2 1 3 24 24 H 1.09000 * 109.47141 * 179.97438 * 1 2 3 25 25 H 1.08999 * 109.46852 * 300.00072 * 1 2 3 26 26 H 1.09001 * 109.47212 * 59.99535 * 1 2 3 27 27 H 1.08001 * 126.46193 * 0.02562 * 3 2 1 28 28 H 1.07998 * 126.63797 * 180.26365 * 4 3 2 29 29 H 1.08000 * 122.06375 * 180.26538 * 8 7 6 30 30 H 1.09002 * 109.47152 * 329.71348 * 10 9 8 31 31 H 1.09001 * 109.46980 * 209.71448 * 10 9 8 32 32 H 1.00908 * 110.99847 * 56.05051 * 11 10 9 33 33 H 1.08995 * 109.47167 * 300.00240 * 12 11 10 34 34 H 1.09003 * 109.46442 * 60.00214 * 12 11 10 35 35 H 1.09005 * 109.47424 * 300.00229 * 13 12 11 36 36 H 1.09004 * 109.47266 * 59.99979 * 13 12 11 37 37 H 0.96998 * 120.00316 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0957 0.0000 4 6 3.6272 0.6474 0.0056 5 6 3.5834 -0.7145 0.0006 6 6 4.7457 -1.6162 0.0018 7 7 5.9954 -1.2409 0.0018 8 6 6.9025 -2.1906 0.0073 9 6 6.4356 -3.4433 0.0027 10 6 7.2716 -4.6972 0.0040 11 7 7.5426 -5.1035 1.3894 12 6 8.3567 -6.3257 1.4299 13 6 8.6171 -6.7170 2.8859 14 6 9.4527 -7.9703 2.9275 15 1 9.7671 -8.4406 2.0074 16 6 9.8160 -8.5168 4.1401 17 7 9.4336 -7.9441 5.2605 18 14 10.8525 -10.0701 4.1915 19 1 12.1469 -9.8243 3.5067 20 1 11.1050 -10.4500 5.6048 21 1 10.1298 -11.1704 3.5042 22 16 4.6744 -3.3764 0.0025 23 8 2.2894 -1.0913 0.0005 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 1.9607 2.1234 0.0004 28 1 4.5141 1.2637 0.0111 29 1 7.9604 -1.9731 0.0120 30 1 8.2139 -4.5062 -0.5096 31 1 6.7328 -5.4936 -0.5094 32 1 6.6839 -5.2242 1.9055 33 1 7.8252 -7.1331 0.9265 34 1 9.3065 -6.1463 0.9261 35 1 9.1485 -5.9095 3.3898 36 1 7.6671 -6.8964 3.3894 37 1 9.6895 -8.3283 6.1135 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344329706.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:31:49 Heat of formation + Delta-G solvation = 30.507232 kcal Electronic energy + Delta-G solvation = -19105.326361 eV Core-core repulsion = 15974.987159 eV Total energy + Delta-G solvation = -3130.339202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.66302 -40.61201 -37.71737 -35.22815 -34.31888 -33.70540 -32.46435 -30.57308 -28.71237 -26.57281 -25.48937 -24.30893 -23.04660 -22.50225 -21.83314 -20.54849 -19.13198 -18.50542 -17.88830 -17.45722 -16.78381 -16.42817 -16.03930 -15.85246 -15.45984 -15.07804 -14.99761 -14.31121 -14.14637 -14.07189 -13.98689 -13.92286 -13.73664 -13.37163 -13.02872 -12.82094 -12.75470 -12.47340 -12.33546 -11.93441 -11.49202 -11.36781 -11.15577 -10.90934 -10.59827 -10.56266 -10.33551 -9.40793 -8.95826 -8.20541 -6.32412 -0.88621 0.05943 0.53597 0.67510 1.40672 1.43431 1.44041 1.46505 1.51919 1.93027 2.40482 3.12985 3.19357 3.36201 3.73285 3.80677 3.92568 3.96276 4.08168 4.47347 4.52737 4.54751 4.61760 4.64863 4.73477 4.75471 4.76266 4.98357 5.04768 5.05357 5.15692 5.42685 5.50064 5.64058 5.75149 5.94325 6.05617 6.19279 6.36940 6.50557 6.84944 7.37029 8.91435 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.035390 B = 0.002345 C = 0.002292 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 790.986644 B =11937.633854 C =12213.008479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.012 3.988 3 C -0.220 4.220 4 C -0.130 4.130 5 C -0.003 4.003 6 C 0.126 3.874 7 N -0.468 5.468 8 C 0.050 3.950 9 C -0.203 4.203 10 C 0.138 3.862 11 N -0.693 5.693 12 C 0.084 3.916 13 C 0.030 3.970 14 C -0.544 4.544 15 H 0.064 0.936 16 C -0.002 4.002 17 N -0.933 5.933 18 Si 0.968 3.032 19 H -0.266 1.266 20 H -0.284 1.284 21 H -0.266 1.266 22 S 0.114 5.886 23 O -0.184 6.184 24 H 0.080 0.920 25 H 0.110 0.890 26 H 0.112 0.888 27 H 0.186 0.814 28 H 0.164 0.836 29 H 0.197 0.803 30 H 0.109 0.891 31 H 0.051 0.949 32 H 0.336 0.664 33 H 0.025 0.975 34 H 0.069 0.931 35 H -0.006 1.006 36 H -0.011 1.011 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.798 17.380 -14.592 28.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.040 4.040 3 C -0.239 4.239 4 C -0.155 4.155 5 C -0.055 4.055 6 C -0.146 4.146 7 N -0.184 5.184 8 C -0.102 4.102 9 C -0.324 4.324 10 C 0.007 3.993 11 N -0.324 5.324 12 C -0.044 4.044 13 C -0.007 4.007 14 C -0.583 4.583 15 H 0.082 0.918 16 C -0.200 4.200 17 N -0.573 5.573 18 Si 0.793 3.207 19 H -0.190 1.190 20 H -0.210 1.210 21 H -0.191 1.191 22 S 0.371 5.629 23 O -0.081 6.081 24 H 0.099 0.901 25 H 0.128 0.872 26 H 0.130 0.870 27 H 0.203 0.797 28 H 0.181 0.819 29 H 0.214 0.786 30 H 0.127 0.873 31 H 0.069 0.931 32 H 0.153 0.847 33 H 0.044 0.956 34 H 0.087 0.913 35 H 0.012 0.988 36 H 0.007 0.993 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -17.998 17.200 -14.359 28.739 hybrid contribution 1.011 -1.163 0.314 1.573 sum -16.986 16.037 -14.045 27.258 Atomic orbital electron populations 1.20647 0.81454 1.05231 1.05926 1.23611 0.95726 0.83110 1.01531 1.21930 0.91128 1.01234 1.09579 1.22174 0.99904 0.92092 1.01293 1.18619 0.80571 0.91955 1.14376 1.24089 0.92161 0.92755 1.05642 1.66540 0.98505 1.36805 1.16550 1.21812 1.00934 0.86091 1.01346 1.25981 0.95308 1.00463 1.10658 1.20348 0.98252 0.90245 0.90484 1.60607 1.23183 1.36143 1.12511 1.21833 0.96484 0.88225 0.97898 1.18928 0.94946 0.94856 0.91993 1.21588 1.33151 1.10684 0.92836 0.91767 1.26012 0.97525 1.01146 0.95281 1.70104 1.47201 1.41919 0.98055 0.85454 0.79180 0.78988 0.77125 1.19040 1.20996 1.19060 1.85013 1.04194 1.04990 1.68655 1.84002 1.15197 1.36528 1.72367 0.90149 0.87211 0.86976 0.79660 0.81878 0.78647 0.87272 0.93093 0.84684 0.95640 0.91261 0.98751 0.99289 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.50 10.41 71.24 0.74 0.24 16 2 C 0.01 0.20 7.31 24.90 0.18 0.38 16 3 C -0.22 -3.39 10.78 22.11 0.24 -3.15 16 4 C -0.13 -2.75 10.80 22.43 0.24 -2.51 16 5 C 0.00 -0.07 7.22 24.14 0.17 0.10 16 6 C 0.13 3.51 7.46 87.22 0.65 4.16 16 7 N -0.47 -13.45 10.52 -190.41 -2.00 -15.45 16 8 C 0.05 1.35 11.14 83.73 0.93 2.28 16 9 C -0.20 -5.44 6.10 24.65 0.15 -5.28 16 10 C 0.14 3.73 6.21 85.56 0.53 4.26 16 11 N -0.69 -24.35 6.49 -517.92 -3.36 -27.71 16 12 C 0.08 3.43 5.62 86.30 0.49 3.92 16 13 C 0.03 1.62 5.23 29.85 0.16 1.77 16 14 C -0.54 -30.94 9.11 25.60 0.23 -30.70 16 15 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 16 C 0.00 -0.10 5.46 84.66 0.46 0.36 16 17 N -0.93 -57.47 13.29 21.45 0.28 -57.19 16 18 Si 0.97 44.24 29.54 68.60 2.03 46.26 16 19 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 22 S 0.11 2.98 23.42 -56.49 -1.32 1.66 16 23 O -0.18 -4.24 10.67 -6.90 -0.07 -4.32 16 24 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.11 0.34 8.14 -2.39 -0.02 0.32 16 26 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 28 H 0.16 3.17 8.06 -2.91 -0.02 3.15 16 29 H 0.20 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.34 12.00 8.72 -89.69 -0.78 11.22 16 33 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 35 H -0.01 -0.35 8.14 -2.38 -0.02 -0.37 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.26 15.28 8.31 -92.71 -0.77 14.51 16 Total: -1.00 -69.80 340.33 1.03 -68.77 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: 0.30 Total: 12.13 kcal Atomic # 6 Polarization: -29.34 SS G_CDS: 5.18 Total: -24.16 kcal Atomic # 7 Polarization: -95.26 SS G_CDS: -5.08 Total: -100.34 kcal Atomic # 8 Polarization: -4.24 SS G_CDS: -0.07 Total: -4.32 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 2.98 SS G_CDS: -1.32 Total: 1.66 kcal Total: -69.80 1.03 -68.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344329706.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.277 kcal (2) G-P(sol) polarization free energy of solvation -69.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.770 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds