Wall clock time and date at job start Tue Mar 31 2020 06:41:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.52996 * 109.47518 * 239.99457 * 2 1 3 5 5 C 1.50699 * 109.46861 * 59.99964 * 4 2 1 6 6 H 1.08003 * 119.99962 * 359.97438 * 5 4 2 7 7 C 1.37884 * 120.00200 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99569 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00031 * 180.02562 * 7 5 4 10 10 H 1.48494 * 109.47485 * 359.97438 * 9 7 5 11 11 H 1.48500 * 109.46928 * 119.99926 * 9 7 5 12 12 H 1.48505 * 109.46854 * 239.99744 * 9 7 5 13 13 C 1.53002 * 109.46911 * 119.99531 * 2 1 3 14 14 N 1.46506 * 109.47035 * 300.00027 * 13 2 1 15 15 C 1.34777 * 119.99873 * 179.97438 * 14 13 2 16 16 O 1.21659 * 119.99943 * 0.02562 * 15 14 13 17 17 C 1.46946 * 120.00107 * 180.02562 * 15 14 13 18 18 C 1.36660 * 125.15616 * 180.02562 * 17 15 14 19 19 C 1.36748 * 114.75347 * 180.02562 * 18 17 15 20 20 C 1.36742 * 114.72844 * 359.97438 * 19 18 17 21 21 C 1.43204 * 125.16471 * 179.97438 * 20 19 18 22 22 N 9.07401 * 74.58277 * 67.06141 * 2 1 3 23 23 S 1.75837 * 125.15264 * 359.69992 * 17 15 14 24 24 H 1.09002 * 109.47398 * 300.00496 * 1 2 3 25 25 H 1.09001 * 109.47194 * 60.00677 * 1 2 3 26 26 H 1.09000 * 109.46968 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47086 * 179.97438 * 3 2 1 28 28 H 1.09001 * 109.46652 * 299.99655 * 3 2 1 29 29 H 1.08992 * 109.47514 * 59.99566 * 3 2 1 30 30 H 1.08992 * 109.47534 * 179.97438 * 4 2 1 31 31 H 1.08996 * 109.47134 * 300.00498 * 4 2 1 32 32 H 0.97002 * 119.99797 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.46930 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47312 * 60.00201 * 13 2 1 35 35 H 0.96999 * 120.00080 * 0.02562 * 14 13 2 36 36 H 1.07993 * 122.62114 * 359.97353 * 18 17 15 37 37 H 1.07992 * 122.63685 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 1.5378 -0.0110 -2.4796 6 1 0.9165 0.8668 -2.3806 7 6 1.8705 -0.4824 -3.7319 8 7 2.6266 -1.5517 -3.8525 9 14 1.2484 0.3985 -5.2572 10 1 0.4238 1.5655 -4.8532 11 1 2.4037 0.8643 -6.0656 12 1 0.4227 -0.5345 -6.0654 13 6 2.0400 -0.7212 1.2493 14 7 1.5516 -0.0304 2.4455 15 6 1.8767 -0.4911 3.6696 16 8 2.5761 -1.4802 3.7813 17 6 1.3864 0.2014 4.8694 18 6 1.6507 -0.1725 6.1570 19 6 1.0851 0.6255 7.1125 20 6 0.3475 1.6681 6.6238 21 6 -0.3402 2.6377 7.4224 22 7 -0.8823 3.4093 8.0558 23 16 0.3773 1.6414 4.8658 24 1 -0.3634 0.5139 0.8899 25 1 -0.3634 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 3.1300 1.4426 0.0005 28 1 1.6766 1.9563 -0.8900 29 1 1.6766 1.9564 0.8899 30 1 3.1300 -0.7209 -1.2493 31 1 1.6767 -1.7489 -1.2491 32 1 2.8610 -1.8832 -4.7335 33 1 3.1300 -0.7208 1.2496 34 1 1.6767 -1.7488 1.2494 35 1 0.9936 0.7580 2.3564 36 1 2.2581 -1.0315 6.4007 37 1 1.2110 0.4465 8.1701 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345900798.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:41:54 Heat of formation + Delta-G solvation = -7.931949 kcal Electronic energy + Delta-G solvation = -19937.705370 eV Core-core repulsion = 16805.699320 eV Total energy + Delta-G solvation = -3132.006050 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02959 -39.15365 -38.47704 -37.36143 -35.30596 -33.99330 -31.45915 -29.13600 -28.09239 -27.94915 -26.44786 -24.77707 -22.37609 -21.80175 -20.64660 -19.34901 -18.34501 -18.01462 -17.23540 -16.63473 -16.54652 -16.31040 -15.61434 -15.40883 -15.06327 -14.92213 -14.73520 -14.44567 -14.28549 -13.92288 -13.86406 -13.82679 -13.34577 -13.14286 -12.88284 -12.68584 -12.58493 -12.32485 -12.23518 -12.11309 -11.93918 -11.52822 -11.39100 -10.94786 -10.82575 -10.49771 -10.27931 -9.89634 -9.72625 -8.12188 -6.19154 -1.05859 -0.05922 0.51924 0.99473 1.42968 1.44831 1.55671 1.72437 1.99507 2.02376 2.19903 2.46305 2.69818 3.22926 3.65321 3.97611 4.07453 4.09648 4.22974 4.31083 4.68615 4.73179 4.77337 4.81611 4.96769 4.98391 5.08247 5.14517 5.20137 5.31718 5.45861 5.53524 5.55360 5.59347 5.82565 5.92665 6.24030 6.31488 6.39924 6.96416 7.03350 7.48550 9.00408 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.031160 B = 0.003040 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.360039 B = 9206.952321 C = 9908.945220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.066 4.066 3 C -0.125 4.125 4 C 0.039 3.961 5 C -0.511 4.511 6 H 0.073 0.927 7 C -0.005 4.005 8 N -0.938 5.938 9 Si 0.955 3.045 10 H -0.257 1.257 11 H -0.286 1.286 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.706 5.706 15 C 0.581 3.419 16 O -0.564 6.564 17 C -0.244 4.244 18 C -0.061 4.061 19 C -0.051 4.051 20 C -0.143 4.143 21 C 0.302 3.698 22 N -0.436 5.436 23 S 0.267 5.733 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.040 0.960 27 H 0.040 0.960 28 H 0.056 0.944 29 H 0.067 0.933 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.259 0.741 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.408 0.592 36 H 0.170 0.830 37 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.911 6.958 20.603 22.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.066 4.066 3 C -0.182 4.182 4 C 0.001 3.999 5 C -0.549 4.549 6 H 0.091 0.909 7 C -0.201 4.201 8 N -0.579 5.579 9 Si 0.781 3.219 10 H -0.181 1.181 11 H -0.212 1.212 12 H -0.212 1.212 13 C 0.017 3.983 14 N -0.357 5.357 15 C 0.368 3.632 16 O -0.445 6.445 17 C -0.366 4.366 18 C -0.094 4.094 19 C -0.087 4.087 20 C -0.265 4.265 21 C -0.014 4.014 22 N -0.114 5.114 23 S 0.537 5.463 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.007 0.993 31 H 0.007 0.993 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.246 0.754 36 H 0.188 0.812 37 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -5.844 8.306 20.297 22.696 hybrid contribution 0.677 -0.979 -0.551 1.312 sum -5.167 7.326 19.746 21.686 Atomic orbital electron populations 1.21729 0.93626 1.01224 1.01628 1.20729 0.96711 0.96328 0.92873 1.21728 1.00200 0.94648 1.01627 1.18977 0.94474 0.94298 0.92107 1.21627 1.30205 1.12002 0.91048 0.90933 1.25913 0.95748 0.95865 1.02619 1.70120 1.38855 1.24975 1.23972 0.85535 0.78018 0.78858 0.79462 1.18057 1.21191 1.21199 1.21345 0.98358 0.95602 0.83039 1.45920 1.52902 1.31905 1.05012 1.17374 0.79821 0.83401 0.82631 1.90833 1.39507 1.27326 1.86819 1.24808 1.10077 1.03941 0.97817 1.20709 0.98840 1.00881 0.88952 1.20760 0.93922 0.90887 1.03161 1.20513 1.09056 1.00371 0.96555 1.24287 0.92386 0.91994 0.92727 1.81363 1.10430 1.10417 1.09162 1.84259 1.43801 1.20496 0.97742 0.91393 0.92467 0.94063 0.94061 0.92466 0.91396 0.99276 0.99279 0.93230 0.92627 0.92626 0.75433 0.81223 0.79243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 2 C -0.07 -2.32 0.54 -52.18 -0.03 -2.35 16 3 C -0.12 -3.90 8.05 71.98 0.58 -3.32 16 4 C 0.04 1.90 4.04 29.85 0.12 2.02 16 5 C -0.51 -26.44 7.65 25.60 0.20 -26.25 16 6 H 0.07 3.52 5.68 -2.91 -0.02 3.50 16 7 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 8 N -0.94 -55.84 13.29 21.45 0.28 -55.56 16 9 Si 0.96 42.70 29.54 68.60 2.03 44.72 16 10 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 11 H -0.29 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 13 C 0.14 4.57 4.56 86.38 0.39 4.96 16 14 N -0.71 -17.61 4.95 -466.81 -2.31 -19.92 16 15 C 0.58 14.89 7.79 86.52 0.67 15.56 16 16 O -0.56 -18.99 16.81 -4.22 -0.07 -19.06 16 17 C -0.24 -4.22 6.45 24.18 0.16 -4.06 16 18 C -0.06 -0.79 9.88 21.55 0.21 -0.57 16 19 C -0.05 -0.45 10.10 21.57 0.22 -0.23 16 20 C -0.14 -1.67 6.31 23.17 0.15 -1.52 16 21 C 0.30 4.66 15.81 88.33 1.40 6.05 16 22 N -0.44 -8.93 18.54 19.00 0.35 -8.58 16 23 S 0.27 3.31 22.31 -56.49 -1.26 2.05 16 24 H 0.07 1.57 6.86 -2.39 -0.02 1.55 16 25 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 26 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.04 1.35 8.14 -2.38 -0.02 1.33 16 28 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 29 H 0.07 1.56 6.86 -2.39 -0.02 1.55 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 32 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 33 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 34 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.41 8.01 5.26 -92.71 -0.49 7.53 16 36 H 0.17 2.05 8.04 -2.91 -0.02 2.03 16 37 H 0.19 0.51 8.06 -2.91 -0.02 0.49 16 Total: -1.00 -68.26 332.60 4.75 -63.51 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: 0.62 Total: 5.66 kcal Atomic # 6 Polarization: -17.94 SS G_CDS: 5.11 Total: -12.83 kcal Atomic # 7 Polarization: -82.38 SS G_CDS: -1.68 Total: -84.06 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.07 Total: -19.06 kcal Atomic # 14 Polarization: 42.70 SS G_CDS: 2.03 Total: 44.72 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.26 Total: 2.05 kcal Total: -68.26 4.75 -63.51 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345900798.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.579 kcal (2) G-P(sol) polarization free energy of solvation -68.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.510 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds