Wall clock time and date at job start Tue Mar 31 2020 06:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47661 * 2 1 4 4 O 1.42901 * 109.47114 * 239.99254 * 2 1 3 5 5 C 1.35955 * 116.99931 * 82.85713 * 4 2 1 6 6 C 1.38671 * 120.06118 * 354.94930 * 5 4 2 7 7 C 1.38180 * 119.96716 * 179.72208 * 6 5 4 8 8 C 1.38267 * 120.09376 * 0.55454 * 7 6 5 9 9 C 1.38256 * 120.12730 * 359.72213 * 8 7 6 10 10 C 1.38332 * 120.02798 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.04418 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47094 * 119.99461 * 2 1 3 13 13 O 1.21291 * 119.99911 * 104.58235 * 12 2 1 14 14 N 1.34777 * 119.99802 * 284.31059 * 12 2 1 15 15 C 1.37100 * 119.99486 * 175.86765 * 14 12 2 16 16 H 1.07993 * 120.00288 * 6.82314 * 15 14 12 17 17 C 1.38952 * 119.99907 * 186.81416 * 15 14 12 18 18 N 1.31414 * 119.99681 * 18.71181 * 17 15 14 19 19 Si 1.86800 * 120.00365 * 198.70860 * 17 15 14 20 20 H 1.48506 * 109.47051 * 90.00163 * 19 17 15 21 21 H 1.48496 * 109.47243 * 210.00381 * 19 17 15 22 22 H 1.48503 * 109.46982 * 330.00402 * 19 17 15 23 23 C 1.46498 * 120.00287 * 355.87101 * 14 12 2 24 24 C 1.47198 * 109.46819 * 95.62415 * 23 14 12 25 25 N 4.24108 * 53.24577 * 66.81690 * 2 1 3 26 26 H 1.09008 * 109.46827 * 306.75593 * 1 2 3 27 27 H 1.08997 * 109.47145 * 66.75072 * 1 2 3 28 28 H 1.08998 * 109.47303 * 186.75693 * 1 2 3 29 29 H 1.07998 * 120.01280 * 359.97438 * 6 5 4 30 30 H 1.07995 * 119.94850 * 180.27436 * 7 6 5 31 31 H 1.07997 * 119.93350 * 179.74427 * 8 7 6 32 32 H 1.07996 * 119.98095 * 179.97438 * 9 8 7 33 33 H 0.97002 * 120.00238 * 179.97438 * 18 17 15 34 34 H 1.08996 * 109.47180 * 215.62336 * 23 14 12 35 35 H 1.08998 * 109.46919 * 335.62329 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0701 0.0509 -2.3152 6 6 1.5851 1.3497 -2.3448 7 6 1.6561 2.0866 -3.5116 8 6 2.1996 1.5268 -4.6531 9 6 2.6791 0.2302 -4.6295 10 6 2.6154 -0.5103 -3.4628 11 9 3.0843 -1.7770 -3.4393 12 6 2.0324 -0.7103 1.2306 13 8 2.4839 -1.8325 1.1412 14 7 1.9850 -0.0965 2.4295 15 6 2.3626 -0.7724 3.5610 16 1 2.8011 -1.7560 3.4814 17 6 2.1812 -0.1916 4.8102 18 7 1.3390 0.8069 4.9546 19 14 3.1342 -0.8302 6.2845 20 1 4.4169 -0.0913 6.4026 21 1 2.3316 -0.6291 7.5176 22 1 3.4117 -2.2780 6.1051 23 6 1.5299 1.2929 2.5237 24 6 0.0977 1.3181 2.8623 25 7 -1.0078 1.3377 3.1236 26 1 -0.3633 0.6150 0.8234 27 1 -0.3633 0.4056 -0.9442 28 1 -0.3634 -1.0205 0.1209 29 1 1.1558 1.7865 -1.4553 30 1 1.2823 3.0995 -3.5332 31 1 2.2500 2.1036 -5.5647 32 1 3.1028 -0.2048 -5.5226 33 1 1.2121 1.2121 5.8267 34 1 2.0958 1.8087 3.2993 35 1 1.6861 1.7919 1.5673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346779840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:43 Heat of formation + Delta-G solvation = -36.182328 kcal Electronic energy + Delta-G solvation = -23176.133520 eV Core-core repulsion = 19476.689265 eV Total energy + Delta-G solvation = -3699.444255 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -48.64118 -40.35131 -38.88540 -37.26413 -35.86280 -34.37455 -32.45822 -31.27969 -30.68149 -29.52444 -27.60413 -25.52480 -24.05158 -22.78676 -22.20568 -19.49676 -18.56507 -18.08992 -16.95916 -16.75360 -16.35888 -16.11142 -15.82174 -15.16544 -14.95148 -14.78961 -14.41712 -14.20976 -13.65863 -13.45802 -13.35522 -12.87445 -12.74900 -12.32100 -12.17029 -11.94368 -11.89920 -11.66889 -11.56963 -11.23884 -11.23593 -11.02001 -10.94296 -10.52817 -10.45575 -10.34391 -9.38878 -9.02500 -8.68406 -8.27251 -8.14692 -6.61451 -4.10046 1.05046 1.21549 2.93614 3.02471 3.17898 3.23994 3.41055 3.52311 3.72056 3.92552 4.06600 4.25031 4.55212 4.68099 4.74974 4.80542 4.89355 5.06492 5.12777 5.18083 5.19029 5.40577 5.43148 5.77837 5.79334 5.92201 5.93595 5.99256 6.10766 6.27991 6.33270 6.50668 6.60914 7.33425 7.37333 7.71857 8.15128 8.71607 8.86109 9.03985 9.54491 10.41696 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.004466 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.531669 B = 6268.168126 C = 6965.639489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.071 3.929 3 H 0.088 0.912 4 O -0.273 6.273 5 C 0.107 3.893 6 C -0.189 4.189 7 C -0.089 4.089 8 C -0.139 4.139 9 C -0.118 4.118 10 C 0.066 3.934 11 F -0.131 7.131 12 C 0.457 3.543 13 O -0.549 6.549 14 N -0.438 5.438 15 C -0.307 4.307 16 H 0.114 0.886 17 C 0.031 3.969 18 N -0.884 5.884 19 Si 0.936 3.064 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.217 3.783 24 C 0.255 3.745 25 N -0.476 5.476 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.141 0.859 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.276 0.724 34 H 0.136 0.864 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.963 7.248 -14.124 15.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.011 3.989 3 H 0.105 0.895 4 O -0.185 6.185 5 C 0.060 3.940 6 C -0.208 4.208 7 C -0.107 4.107 8 C -0.157 4.157 9 C -0.137 4.137 10 C 0.046 3.954 11 F -0.109 7.109 12 C 0.244 3.756 13 O -0.430 6.430 14 N -0.159 5.159 15 C -0.434 4.434 16 H 0.132 0.868 17 C -0.171 4.171 18 N -0.524 5.524 19 Si 0.762 3.238 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.192 1.192 23 C 0.090 3.910 24 C -0.062 4.062 25 N -0.157 5.157 26 H 0.099 0.901 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.158 0.842 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.087 0.913 34 H 0.154 0.846 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.589 6.534 -13.546 15.051 hybrid contribution 0.663 -0.156 0.933 1.155 sum 1.252 6.378 -12.613 14.189 Atomic orbital electron populations 1.22396 0.93230 1.04652 1.03220 1.22404 0.95428 0.96578 0.84449 0.89494 1.86327 1.80087 1.37421 1.14674 1.19221 0.96422 0.91476 0.86898 1.21317 1.05339 0.93507 1.00630 1.21006 0.97882 0.99791 0.92005 1.20870 1.01156 0.94702 0.98962 1.20991 1.01362 0.94990 0.96324 1.17035 1.03783 0.81431 0.93187 1.91520 1.86333 1.36100 1.96979 1.19384 0.85497 0.87206 0.83516 1.90603 1.48313 1.19056 1.84999 1.43629 1.56617 1.09818 1.05866 1.19867 1.37924 1.03420 0.82176 0.86790 1.25271 0.96037 0.96678 0.99140 1.69683 1.31524 1.25579 1.25642 0.85747 0.79120 0.79565 0.79334 1.19977 1.20979 1.19232 1.19046 0.84547 0.85943 1.01506 1.28939 0.94297 0.92710 0.90276 1.80918 1.14449 1.08228 1.12068 0.90123 0.91287 0.90755 0.84155 0.85129 0.85115 0.84311 0.91264 0.84644 0.90524 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.94 37.16 0.33 -2.56 16 2 C 0.07 1.27 1.88 -27.88 -0.05 1.22 16 3 H 0.09 1.26 4.69 -51.93 -0.24 1.02 16 4 O -0.27 -5.21 9.26 -39.02 -0.36 -5.57 16 5 C 0.11 1.66 6.55 -39.18 -0.26 1.40 16 6 C -0.19 -2.28 8.12 -39.44 -0.32 -2.60 16 7 C -0.09 -0.85 10.04 -39.59 -0.40 -1.24 16 8 C -0.14 -1.27 10.04 -39.56 -0.40 -1.66 16 9 C -0.12 -1.29 10.02 -39.54 -0.40 -1.68 16 10 C 0.07 0.97 7.31 -39.30 -0.29 0.68 16 11 F -0.13 -2.21 17.11 2.25 0.04 -2.17 16 12 C 0.46 10.45 6.91 -10.98 -0.08 10.37 16 13 O -0.55 -14.90 16.16 -13.87 -0.22 -15.13 16 14 N -0.44 -9.96 2.60 -117.94 -0.31 -10.27 16 15 C -0.31 -7.76 9.47 -14.93 -0.14 -7.90 16 16 H 0.11 3.08 7.24 -52.49 -0.38 2.70 16 17 C 0.03 0.75 5.10 -17.47 -0.09 0.66 16 18 N -0.88 -21.15 8.51 55.50 0.47 -20.68 16 19 Si 0.94 19.37 29.59 -169.99 -5.03 14.33 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.66 7.11 56.52 0.40 -5.26 16 23 C 0.22 4.12 4.88 -6.83 -0.03 4.08 16 24 C 0.26 5.36 10.58 -20.76 -0.22 5.14 16 25 N -0.48 -10.79 18.42 42.16 0.78 -10.01 16 26 H 0.08 1.35 4.79 -51.92 -0.25 1.11 16 27 H 0.07 0.93 6.79 -51.93 -0.35 0.58 16 28 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 29 H 0.14 1.50 5.45 -52.49 -0.29 1.22 16 30 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 31 H 0.13 0.81 8.06 -52.49 -0.42 0.38 16 32 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.28 6.44 8.31 -40.82 -0.34 6.10 16 34 H 0.14 2.63 6.38 -51.93 -0.33 2.30 16 35 H 0.08 1.09 5.86 -51.93 -0.30 0.79 16 LS Contribution 304.63 15.07 4.59 4.59 Total: -1.00 -31.26 304.63 -5.35 -36.61 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: -2.97 Total: 2.39 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.33 Total: 5.90 kcal Atomic # 7 Polarization: -41.90 SS G_CDS: 0.94 Total: -40.96 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.59 Total: -20.70 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.04 Total: -2.17 kcal Atomic # 14 Polarization: 19.37 SS G_CDS: -5.03 Total: 14.33 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -31.26 -5.35 -36.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346779840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.425 kcal (2) G-P(sol) polarization free energy of solvation -31.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds