Wall clock time and date at job start Tue Mar 31 2020 06:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47661 * 2 1 4 4 O 1.42901 * 109.47114 * 239.99254 * 2 1 3 5 5 C 1.35955 * 116.99931 * 82.85713 * 4 2 1 6 6 C 1.38671 * 120.06118 * 354.94930 * 5 4 2 7 7 C 1.38180 * 119.96716 * 179.72208 * 6 5 4 8 8 C 1.38267 * 120.09376 * 0.55454 * 7 6 5 9 9 C 1.38256 * 120.12730 * 359.72213 * 8 7 6 10 10 C 1.38332 * 120.02798 * 0.02562 * 9 8 7 11 11 F 1.35097 * 120.04418 * 180.02562 * 10 9 8 12 12 C 1.50706 * 109.47094 * 119.99461 * 2 1 3 13 13 O 1.21291 * 119.99911 * 104.58235 * 12 2 1 14 14 N 1.34777 * 119.99802 * 284.31059 * 12 2 1 15 15 C 1.37100 * 119.99486 * 175.86765 * 14 12 2 16 16 H 1.07993 * 120.00288 * 6.82314 * 15 14 12 17 17 C 1.38952 * 119.99907 * 186.81416 * 15 14 12 18 18 N 1.31414 * 119.99681 * 18.71181 * 17 15 14 19 19 Si 1.86800 * 120.00365 * 198.70860 * 17 15 14 20 20 H 1.48506 * 109.47051 * 90.00163 * 19 17 15 21 21 H 1.48496 * 109.47243 * 210.00381 * 19 17 15 22 22 H 1.48503 * 109.46982 * 330.00402 * 19 17 15 23 23 C 1.46498 * 120.00287 * 355.87101 * 14 12 2 24 24 C 1.47198 * 109.46819 * 95.62415 * 23 14 12 25 25 N 4.24108 * 53.24577 * 66.81690 * 2 1 3 26 26 H 1.09008 * 109.46827 * 306.75593 * 1 2 3 27 27 H 1.08997 * 109.47145 * 66.75072 * 1 2 3 28 28 H 1.08998 * 109.47303 * 186.75693 * 1 2 3 29 29 H 1.07998 * 120.01280 * 359.97438 * 6 5 4 30 30 H 1.07995 * 119.94850 * 180.27436 * 7 6 5 31 31 H 1.07997 * 119.93350 * 179.74427 * 8 7 6 32 32 H 1.07996 * 119.98095 * 179.97438 * 9 8 7 33 33 H 0.97002 * 120.00238 * 179.97438 * 18 17 15 34 34 H 1.08996 * 109.47180 * 215.62336 * 23 14 12 35 35 H 1.08998 * 109.46919 * 335.62329 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0064 -0.6738 -1.1667 5 6 2.0701 0.0509 -2.3152 6 6 1.5851 1.3497 -2.3448 7 6 1.6561 2.0866 -3.5116 8 6 2.1996 1.5268 -4.6531 9 6 2.6791 0.2302 -4.6295 10 6 2.6154 -0.5103 -3.4628 11 9 3.0843 -1.7770 -3.4393 12 6 2.0324 -0.7103 1.2306 13 8 2.4839 -1.8325 1.1412 14 7 1.9850 -0.0965 2.4295 15 6 2.3626 -0.7724 3.5610 16 1 2.8011 -1.7560 3.4814 17 6 2.1812 -0.1916 4.8102 18 7 1.3390 0.8069 4.9546 19 14 3.1342 -0.8302 6.2845 20 1 4.4169 -0.0913 6.4026 21 1 2.3316 -0.6291 7.5176 22 1 3.4117 -2.2780 6.1051 23 6 1.5299 1.2929 2.5237 24 6 0.0977 1.3181 2.8623 25 7 -1.0078 1.3377 3.1236 26 1 -0.3633 0.6150 0.8234 27 1 -0.3633 0.4056 -0.9442 28 1 -0.3634 -1.0205 0.1209 29 1 1.1558 1.7865 -1.4553 30 1 1.2823 3.0995 -3.5332 31 1 2.2500 2.1036 -5.5647 32 1 3.1028 -0.2048 -5.5226 33 1 1.2121 1.2121 5.8267 34 1 2.0958 1.8087 3.2993 35 1 1.6861 1.7919 1.5673 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346779840.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:42 Heat of formation + Delta-G solvation = -54.914453 kcal Electronic energy + Delta-G solvation = -23176.945806 eV Core-core repulsion = 19476.689265 eV Total energy + Delta-G solvation = -3700.256541 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.78350 -41.66158 -40.32546 -38.40594 -37.62680 -36.16210 -34.15851 -32.74711 -31.57211 -30.51844 -29.27473 -27.24425 -25.38151 -23.83115 -23.26404 -21.03897 -20.01336 -19.58778 -18.16585 -18.11041 -17.92418 -17.43142 -17.01418 -16.66887 -16.23154 -16.09520 -15.68420 -15.35425 -15.15752 -15.14225 -14.87764 -14.14465 -13.96443 -13.77437 -13.59370 -13.35082 -13.23613 -13.11821 -12.92169 -12.85646 -12.55704 -12.33833 -12.28385 -12.14786 -12.06777 -11.83498 -11.20069 -10.49290 -10.11734 -9.87309 -9.18128 -8.47191 -6.02736 0.18703 0.31487 1.32684 1.43469 1.52557 1.69420 1.72075 2.12670 2.25916 2.38402 2.66893 2.91503 3.01197 3.31451 3.49155 3.59864 3.72089 3.85066 3.89977 4.02997 4.27219 4.38747 4.42381 4.49042 4.53263 4.64146 4.92976 4.98673 5.06831 5.16629 5.32673 5.41388 5.48291 5.71258 5.87722 6.24520 6.38107 6.99355 7.05891 7.21330 7.75227 8.52754 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024289 B = 0.004466 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1152.531669 B = 6268.168126 C = 6965.639489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.084 3.916 3 H 0.126 0.874 4 O -0.313 6.313 5 C 0.070 3.930 6 C -0.190 4.190 7 C -0.077 4.077 8 C -0.123 4.123 9 C -0.114 4.114 10 C 0.026 3.974 11 F -0.157 7.157 12 C 0.444 3.556 13 O -0.608 6.608 14 N -0.443 5.443 15 C -0.342 4.342 16 H 0.082 0.918 17 C 0.012 3.988 18 N -0.888 5.888 19 Si 0.991 3.009 20 H -0.259 1.259 21 H -0.280 1.280 22 H -0.281 1.281 23 C 0.215 3.785 24 C 0.268 3.732 25 N -0.506 5.506 26 H 0.078 0.922 27 H 0.102 0.898 28 H 0.046 0.954 29 H 0.155 0.845 30 H 0.171 0.829 31 H 0.172 0.828 32 H 0.161 0.839 33 H 0.279 0.721 34 H 0.135 0.865 35 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 10.636 -15.749 19.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.025 3.975 3 H 0.143 0.857 4 O -0.226 6.226 5 C 0.024 3.976 6 C -0.209 4.209 7 C -0.095 4.095 8 C -0.141 4.141 9 C -0.132 4.132 10 C 0.006 3.994 11 F -0.136 7.136 12 C 0.233 3.767 13 O -0.492 6.492 14 N -0.164 5.164 15 C -0.469 4.469 16 H 0.100 0.900 17 C -0.191 4.191 18 N -0.527 5.527 19 Si 0.815 3.185 20 H -0.184 1.184 21 H -0.206 1.206 22 H -0.206 1.206 23 C 0.089 3.911 24 C -0.049 4.049 25 N -0.188 5.188 26 H 0.096 0.904 27 H 0.121 0.879 28 H 0.065 0.935 29 H 0.173 0.827 30 H 0.188 0.812 31 H 0.189 0.811 32 H 0.178 0.822 33 H 0.090 0.910 34 H 0.153 0.847 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.391 9.976 -15.180 18.168 hybrid contribution 0.716 -1.149 1.329 1.897 sum 1.108 8.827 -13.850 16.461 Atomic orbital electron populations 1.22323 0.92164 1.03137 1.04817 1.22218 0.95844 0.97168 0.82292 0.85718 1.86259 1.81219 1.39246 1.15906 1.19586 0.99057 0.93092 0.85838 1.21565 1.04827 0.92084 1.02399 1.21518 0.96121 1.01064 0.90802 1.21413 0.98543 0.93724 1.00406 1.21352 1.00713 0.95580 0.95561 1.17658 1.05724 0.81207 0.94811 1.91442 1.86978 1.37965 1.97199 1.20355 0.84346 0.86918 0.85037 1.90553 1.50735 1.21803 1.86154 1.43745 1.56146 1.11123 1.05350 1.19688 1.39991 1.03245 0.83939 0.90000 1.25826 0.96080 0.96691 1.00461 1.69762 1.31153 1.25563 1.26239 0.84953 0.78592 0.78376 0.76571 1.18365 1.20581 1.20641 1.19362 0.83126 0.84153 1.04453 1.29264 0.94536 0.91753 0.89349 1.80923 1.15477 1.09174 1.13201 0.90381 0.87926 0.93495 0.82710 0.81178 0.81053 0.82167 0.90974 0.84750 0.85074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.30 8.94 71.98 0.64 -4.66 16 2 C 0.08 2.96 1.88 29.85 0.06 3.02 16 3 H 0.13 3.29 4.69 -2.39 -0.01 3.28 16 4 O -0.31 -12.22 9.26 -74.48 -0.69 -12.91 16 5 C 0.07 2.13 6.55 22.53 0.15 2.27 16 6 C -0.19 -3.96 8.12 22.36 0.18 -3.77 16 7 C -0.08 -1.07 10.04 22.26 0.22 -0.85 16 8 C -0.12 -1.64 10.04 22.28 0.22 -1.41 16 9 C -0.11 -2.19 10.02 22.30 0.22 -1.97 16 10 C 0.03 0.75 7.31 22.45 0.16 0.92 16 11 F -0.16 -5.60 17.11 44.97 0.77 -4.83 16 12 C 0.44 20.97 6.91 87.66 0.61 21.58 16 13 O -0.61 -35.13 16.16 15.50 0.25 -34.88 16 14 N -0.44 -20.47 2.60 -645.43 -1.68 -22.14 16 15 C -0.34 -17.81 9.47 84.04 0.80 -17.02 16 16 H 0.08 4.72 7.24 -2.91 -0.02 4.70 16 17 C 0.01 0.55 5.10 84.93 0.43 0.99 16 18 N -0.89 -41.84 8.51 21.66 0.18 -41.65 16 19 Si 0.99 39.78 29.59 68.60 2.03 41.81 16 20 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 21 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 22 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.22 7.85 4.88 84.57 0.41 8.26 16 24 C 0.27 10.94 10.58 89.44 0.95 11.88 16 25 N -0.51 -22.51 18.42 20.01 0.37 -22.15 16 26 H 0.08 2.51 4.79 -2.38 -0.01 2.50 16 27 H 0.10 2.53 6.79 -2.39 -0.02 2.52 16 28 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.16 2.64 5.45 -2.91 -0.02 2.63 16 30 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 31 H 0.17 0.96 8.06 -2.91 -0.02 0.93 16 32 H 0.16 2.28 8.06 -2.91 -0.02 2.25 16 33 H 0.28 12.67 8.31 -92.71 -0.77 11.90 16 34 H 0.14 5.01 6.38 -2.39 -0.02 4.99 16 35 H 0.13 3.29 5.86 -2.39 -0.01 3.27 16 Total: -1.00 -73.76 304.63 7.45 -66.31 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.16 Total: 11.21 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 5.06 Total: 19.23 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -1.12 Total: -85.94 kcal Atomic # 8 Polarization: -47.35 SS G_CDS: -0.44 Total: -47.79 kcal Atomic # 9 Polarization: -5.60 SS G_CDS: 0.77 Total: -4.83 kcal Atomic # 14 Polarization: 39.78 SS G_CDS: 2.03 Total: 41.81 kcal Total: -73.76 7.45 -66.31 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346779840.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.396 kcal (2) G-P(sol) polarization free energy of solvation -73.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds