Wall clock time and date at job start Tue Mar 31 2020 06:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 109.47259 * 2 1 4 4 O 1.42899 * 109.46927 * 119.99955 * 2 1 3 5 5 C 1.35959 * 117.00043 * 273.82012 * 4 2 1 6 6 C 1.38661 * 120.05981 * 5.37255 * 5 4 2 7 7 C 1.38184 * 119.97279 * 180.02562 * 6 5 4 8 8 C 1.38263 * 120.08927 * 359.97438 * 7 6 5 9 9 C 1.38251 * 120.12966 * 0.02562 * 8 7 6 10 10 C 1.38329 * 120.03027 * 0.27024 * 9 8 7 11 11 F 1.35107 * 120.05021 * 179.72393 * 10 9 8 12 12 C 1.50700 * 109.47030 * 239.99620 * 2 1 3 13 13 O 1.21294 * 119.99854 * 255.74231 * 12 2 1 14 14 N 1.34766 * 120.00169 * 75.74151 * 12 2 1 15 15 C 1.37103 * 120.00252 * 185.37765 * 14 12 2 16 16 H 1.07996 * 119.99555 * 18.47993 * 15 14 12 17 17 C 1.38947 * 120.00200 * 198.46846 * 15 14 12 18 18 N 1.31417 * 119.99946 * 13.09738 * 17 15 14 19 19 Si 1.86794 * 120.00014 * 193.09517 * 17 15 14 20 20 H 1.48498 * 109.47195 * 90.00325 * 19 17 15 21 21 H 1.48500 * 109.47244 * 210.00375 * 19 17 15 22 22 H 1.48496 * 109.47142 * 330.00339 * 19 17 15 23 23 C 1.46504 * 119.99852 * 5.38226 * 14 12 2 24 24 C 1.47198 * 109.47125 * 84.92578 * 23 14 12 25 25 N 4.09763 * 120.30007 * 324.08802 * 2 1 3 26 26 H 1.09000 * 109.47218 * 187.01855 * 1 2 3 27 27 H 1.09001 * 109.46804 * 307.01939 * 1 2 3 28 28 H 1.09002 * 109.46760 * 67.01800 * 1 2 3 29 29 H 1.08001 * 120.01609 * 359.97438 * 6 5 4 30 30 H 1.07997 * 119.95692 * 180.02562 * 7 6 5 31 31 H 1.08002 * 119.93472 * 180.02562 * 8 7 6 32 32 H 1.08004 * 119.98504 * 180.02562 * 9 8 7 33 33 H 0.96999 * 119.99948 * 179.97438 * 18 17 15 34 34 H 1.09005 * 109.46888 * 204.92299 * 23 14 12 35 35 H 1.08995 * 109.47089 * 324.92185 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.1360 0.0687 2.2984 6 6 1.7076 1.3874 2.3169 7 6 1.8407 2.1404 3.4679 8 6 2.4001 1.5806 4.6016 9 6 2.8286 0.2663 4.5876 10 6 2.7034 -0.4904 3.4364 11 9 3.1271 -1.7732 3.4205 12 6 2.0324 -0.7105 -1.2304 13 8 2.4784 -1.8349 -1.1418 14 7 1.9860 -0.0966 -2.4292 15 6 2.3392 -0.7804 -3.5638 16 1 2.3645 -1.8601 -3.5576 17 6 2.6642 -0.0845 -4.7217 18 7 2.8852 1.2100 -4.6701 19 14 2.7872 -0.9887 -6.3515 20 1 1.4612 -0.9870 -7.0199 21 1 3.7807 -0.3089 -7.2210 22 1 3.2177 -2.3892 -6.1093 23 6 1.5582 1.3017 -2.5200 24 6 2.7092 2.1842 -2.2689 25 7 3.5974 2.8654 -2.0751 26 1 -0.3634 -1.0200 0.1256 27 1 -0.3633 0.6188 0.8205 28 1 -0.3633 0.4013 -0.9461 29 1 1.2708 1.8260 1.4319 30 1 1.5066 3.1673 3.4822 31 1 2.5025 2.1713 5.5000 32 1 3.2648 -0.1688 5.4747 33 1 3.1125 1.6958 -5.4783 34 1 1.1617 1.4964 -3.5166 35 1 0.7841 1.4938 -1.7771 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346779843.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:45 Heat of formation + Delta-G solvation = -41.371567 kcal Electronic energy + Delta-G solvation = -23217.078600 eV Core-core repulsion = 19517.409323 eV Total energy + Delta-G solvation = -3699.669277 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -48.61577 -40.32186 -38.85394 -37.23817 -35.82288 -34.42001 -32.50375 -31.26468 -30.66889 -29.50390 -27.57420 -25.52358 -24.06100 -22.75030 -22.19311 -19.49224 -18.49652 -18.07257 -16.91033 -16.86258 -16.37018 -16.03318 -15.82412 -15.10487 -14.92928 -14.79066 -14.39738 -14.21251 -13.82438 -13.33525 -13.19249 -12.87539 -12.69551 -12.40655 -12.25322 -11.96255 -11.91245 -11.67750 -11.57371 -11.30469 -11.24787 -11.04675 -10.80690 -10.61223 -10.46544 -10.42348 -9.37550 -8.99823 -8.68721 -8.18038 -8.12022 -6.56932 -4.13517 1.08265 1.24326 2.91887 3.05524 3.18673 3.24603 3.45488 3.55228 3.67326 3.87779 4.04942 4.27086 4.56436 4.69814 4.80072 4.83658 4.92335 5.02172 5.15503 5.18077 5.21826 5.32625 5.46610 5.70165 5.75452 5.90387 5.97391 6.01688 6.13297 6.24079 6.32023 6.48968 6.63407 7.36218 7.38053 7.77217 8.17363 8.63946 8.87279 9.05306 9.56424 10.47638 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.024593 B = 0.004576 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1138.270712 B = 6117.698509 C = 6677.814972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.068 3.932 3 H 0.085 0.915 4 O -0.273 6.273 5 C 0.107 3.893 6 C -0.188 4.188 7 C -0.088 4.088 8 C -0.138 4.138 9 C -0.118 4.118 10 C 0.066 3.934 11 F -0.131 7.131 12 C 0.460 3.540 13 O -0.546 6.546 14 N -0.438 5.438 15 C -0.306 4.306 16 H 0.110 0.890 17 C 0.031 3.969 18 N -0.887 5.887 19 Si 0.936 3.064 20 H -0.275 1.275 21 H -0.284 1.284 22 H -0.268 1.268 23 C 0.213 3.787 24 C 0.244 3.756 25 N -0.470 5.470 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.085 0.915 29 H 0.140 0.860 30 H 0.131 0.869 31 H 0.131 0.869 32 H 0.139 0.861 33 H 0.275 0.725 34 H 0.140 0.860 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.816 4.162 12.084 14.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.008 3.992 3 H 0.102 0.898 4 O -0.185 6.185 5 C 0.059 3.941 6 C -0.206 4.206 7 C -0.107 4.107 8 C -0.156 4.156 9 C -0.137 4.137 10 C 0.046 3.954 11 F -0.109 7.109 12 C 0.246 3.754 13 O -0.426 6.426 14 N -0.161 5.161 15 C -0.433 4.433 16 H 0.128 0.872 17 C -0.172 4.172 18 N -0.527 5.527 19 Si 0.763 3.237 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.193 1.193 23 C 0.086 3.914 24 C -0.075 4.075 25 N -0.150 5.150 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.104 0.896 29 H 0.157 0.843 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.157 0.843 33 H 0.086 0.914 34 H 0.158 0.842 35 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -6.164 4.443 12.208 14.379 hybrid contribution -0.068 -0.423 -1.125 1.204 sum -6.231 4.019 11.083 13.335 Atomic orbital electron populations 1.22387 0.93092 1.04381 1.03464 1.22398 0.95501 0.96715 0.84576 0.89770 1.86311 1.80489 1.35883 1.15813 1.19210 0.96394 0.91285 0.87164 1.21290 1.05732 0.92983 1.00615 1.21003 0.97739 0.99795 0.92119 1.20869 1.01235 0.94467 0.99047 1.20988 1.01454 0.94763 0.96485 1.17035 1.03962 0.80797 0.93609 1.91520 1.87854 1.34622 1.96935 1.19537 0.84458 0.88362 0.83023 1.90604 1.47894 1.19613 1.84471 1.43505 1.58567 1.08590 1.05393 1.19805 1.44615 0.93054 0.85795 0.87232 1.25334 0.95560 0.95907 1.00405 1.69746 1.45486 1.07522 1.29911 0.85743 0.78145 0.79497 0.80346 1.20029 1.20929 1.19255 1.18996 0.87942 0.79370 1.05069 1.29300 0.94939 0.93088 0.90147 1.80917 1.09774 1.11534 1.12778 0.90408 0.91418 0.89630 0.84255 0.85124 0.85076 0.84277 0.91409 0.84242 0.90223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.88 37.16 0.33 -2.06 16 2 C 0.07 1.22 1.79 -27.88 -0.05 1.17 16 3 H 0.08 1.40 4.84 -51.93 -0.25 1.15 16 4 O -0.27 -5.38 9.24 -39.01 -0.36 -5.74 16 5 C 0.11 1.76 6.62 -39.18 -0.26 1.50 16 6 C -0.19 -2.48 8.37 -39.45 -0.33 -2.81 16 7 C -0.09 -0.94 10.04 -39.59 -0.40 -1.34 16 8 C -0.14 -1.39 10.04 -39.57 -0.40 -1.79 16 9 C -0.12 -1.39 10.02 -39.54 -0.40 -1.79 16 10 C 0.07 1.03 7.31 -39.30 -0.29 0.74 16 11 F -0.13 -2.30 17.11 2.25 0.04 -2.27 16 12 C 0.46 10.61 6.85 -10.99 -0.08 10.53 16 13 O -0.55 -15.01 16.27 -13.85 -0.23 -15.24 16 14 N -0.44 -10.01 2.60 -117.93 -0.31 -10.31 16 15 C -0.31 -7.70 9.34 -14.93 -0.14 -7.84 16 16 H 0.11 2.91 7.40 -52.49 -0.39 2.52 16 17 C 0.03 0.74 5.08 -17.47 -0.09 0.65 16 18 N -0.89 -21.60 9.01 55.50 0.50 -21.10 16 19 Si 0.94 19.35 29.57 -169.99 -5.03 14.32 16 20 H -0.27 -5.45 7.11 56.52 0.40 -5.05 16 21 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 C 0.21 4.05 4.69 -6.83 -0.03 4.02 16 24 C 0.24 5.24 12.94 -20.76 -0.27 4.98 16 25 N -0.47 -10.96 18.54 42.15 0.78 -10.18 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 27 H 0.07 0.73 6.99 -51.93 -0.36 0.37 16 28 H 0.09 1.02 6.31 -51.93 -0.33 0.69 16 29 H 0.14 1.65 5.39 -52.49 -0.28 1.37 16 30 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 1.28 8.06 -52.48 -0.42 0.86 16 33 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 34 H 0.14 2.70 6.29 -51.93 -0.33 2.37 16 35 H 0.08 1.12 4.91 -51.93 -0.26 0.87 16 LS Contribution 308.39 15.07 4.65 4.65 Total: -1.00 -32.24 308.39 -5.37 -37.60 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -3.02 Total: 2.29 kcal Atomic # 6 Polarization: 8.36 SS G_CDS: -2.39 Total: 5.97 kcal Atomic # 7 Polarization: -42.56 SS G_CDS: 0.97 Total: -41.59 kcal Atomic # 8 Polarization: -20.39 SS G_CDS: -0.59 Total: -20.98 kcal Atomic # 9 Polarization: -2.30 SS G_CDS: 0.04 Total: -2.27 kcal Atomic # 14 Polarization: 19.35 SS G_CDS: -5.03 Total: 14.32 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.24 -5.37 -37.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346779843.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.771 kcal (2) G-P(sol) polarization free energy of solvation -32.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds