Wall clock time and date at job start Tue Mar 31 2020 06:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38429 * 122.53747 * 2 1 4 4 C 1.33383 * 114.91872 * 180.27489 * 3 2 1 5 5 S 1.75875 * 109.59641 * 359.77496 * 4 3 2 6 6 C 1.33382 * 122.54246 * 179.83909 * 2 1 3 7 7 C 1.50702 * 125.20250 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.46914 * 89.72328 * 7 6 2 9 9 C 1.53003 * 109.47307 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47356 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99905 * 180.02562 * 10 9 8 13 13 C 1.37104 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99732 * 17.72018 * 13 12 10 15 15 C 1.38943 * 120.00136 * 197.72213 * 13 12 10 16 16 N 1.31411 * 119.99935 * 21.42378 * 15 13 12 17 17 Si 1.86797 * 119.99984 * 201.41613 * 15 13 12 18 18 H 1.48503 * 109.47296 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47271 * 120.00593 * 17 15 13 20 20 H 1.48507 * 109.47370 * 240.00145 * 17 15 13 21 21 C 1.46504 * 120.00399 * 0.02562 * 12 10 9 22 22 C 1.47203 * 109.46665 * 84.23037 * 21 12 10 23 23 N 7.68401 * 57.83533 * 190.14838 * 2 1 3 24 24 H 1.09005 * 109.46857 * 270.16414 * 1 2 3 25 25 H 1.08996 * 109.47615 * 30.16146 * 1 2 3 26 26 H 1.08994 * 109.47178 * 150.17003 * 1 2 3 27 27 H 1.08002 * 122.54169 * 0.04993 * 3 2 1 28 28 H 1.08008 * 125.19863 * 179.75173 * 4 3 2 29 29 H 1.08996 * 109.47133 * 329.72434 * 7 6 2 30 30 H 1.09004 * 109.47055 * 209.72047 * 7 6 2 31 31 H 1.08997 * 109.47400 * 59.99633 * 8 7 6 32 32 H 1.08999 * 109.47262 * 300.00158 * 8 7 6 33 33 H 1.08999 * 109.47124 * 300.00286 * 9 8 7 34 34 H 1.09005 * 109.46400 * 59.99810 * 9 8 7 35 35 H 0.97003 * 119.99991 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.47590 * 204.23119 * 21 12 10 37 37 H 1.09000 * 109.46845 * 324.23890 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0058 5 16 3.9386 -0.7303 -0.0052 6 6 2.2245 -1.1244 0.0032 7 6 1.6537 -2.5192 0.0065 8 6 1.4547 -2.9922 -1.4348 9 6 0.8758 -4.4085 -1.4315 10 6 0.6792 -4.8741 -2.8512 11 8 0.9736 -4.1451 -3.7748 12 7 0.1763 -6.1006 -3.0945 13 6 -0.0022 -6.5245 -4.3861 14 1 0.5080 -6.0221 -5.1946 15 6 -0.8393 -7.6004 -4.6548 16 7 -1.7660 -7.9441 -3.7887 17 14 -0.6477 -8.5580 -6.2471 18 1 0.4605 -7.9747 -7.0453 19 1 -0.3402 -9.9774 -5.9373 20 1 -1.9108 -8.4836 -7.0246 21 6 -0.1798 -6.9809 -1.9789 22 6 -1.5364 -6.6544 -1.5101 23 7 -2.5836 -6.4029 -1.1461 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5163 26 1 -0.3633 -0.8915 -0.5112 27 1 1.7965 2.1465 0.0008 28 1 4.3077 1.7824 -0.0106 29 1 0.6946 -2.5180 0.5242 30 1 2.3420 -3.1921 0.5180 31 1 2.4138 -2.9933 -1.9526 32 1 0.7666 -2.3192 -1.9463 33 1 1.5643 -5.0812 -0.9201 34 1 -0.0833 -4.4076 -0.9136 35 1 -2.3507 -8.6950 -3.9765 36 1 -0.1501 -8.0186 -2.3110 37 1 0.5300 -6.8397 -1.1638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346796522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:22 Heat of formation + Delta-G solvation = 17.044564 kcal Electronic energy + Delta-G solvation = -20311.013376 eV Core-core repulsion = 17180.090389 eV Total energy + Delta-G solvation = -3130.922987 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.00378 -38.46434 -35.87292 -34.66316 -34.10156 -31.89386 -30.85836 -28.98691 -27.43013 -25.98078 -24.42414 -22.75191 -21.48085 -19.01811 -18.35018 -17.89799 -17.22227 -16.44749 -16.12134 -15.40752 -14.94827 -14.62837 -14.26303 -14.00722 -13.68138 -13.20648 -12.96798 -12.89792 -12.70546 -12.34693 -12.18340 -11.93954 -11.85658 -11.66017 -11.55994 -11.38857 -11.23585 -11.12725 -10.96269 -10.73677 -10.57855 -10.37381 -10.36405 -10.23615 -9.26071 -8.61746 -8.51831 -8.31512 -8.03290 -6.50130 -3.98978 0.99941 1.64497 2.00588 2.67949 3.08968 3.22654 3.28886 3.56546 3.80663 3.97627 4.12336 4.66474 4.85751 4.89254 4.92478 5.11240 5.20935 5.34789 5.38970 5.42236 5.45738 5.62846 5.67176 5.72859 5.84922 5.91813 5.96899 6.00283 6.05501 6.19393 6.43416 6.44633 6.50996 6.58010 6.68087 7.47799 7.92216 8.29487 8.73465 9.01978 9.21295 9.76141 10.56197 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.003418 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.063771 B = 8190.449851 C = 8675.767882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.114 4.114 3 C -0.126 4.126 4 C -0.222 4.222 5 S 0.089 5.911 6 C -0.162 4.162 7 C -0.052 4.052 8 C -0.092 4.092 9 C -0.136 4.136 10 C 0.456 3.544 11 O -0.573 6.573 12 N -0.446 5.446 13 C -0.313 4.313 14 H 0.108 0.892 15 C 0.031 3.969 16 N -0.878 5.878 17 Si 0.925 3.075 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.283 1.283 21 C 0.222 3.778 22 C 0.247 3.753 23 N -0.474 5.474 24 H 0.066 0.934 25 H 0.064 0.936 26 H 0.071 0.929 27 H 0.136 0.864 28 H 0.160 0.840 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.272 0.728 36 H 0.127 0.873 37 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.275 9.555 10.381 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.126 4.126 3 C -0.157 4.157 4 C -0.358 4.358 5 S 0.354 5.646 6 C -0.279 4.279 7 C -0.091 4.091 8 C -0.131 4.131 9 C -0.177 4.177 10 C 0.245 3.755 11 O -0.455 6.455 12 N -0.167 5.167 13 C -0.440 4.440 14 H 0.126 0.874 15 C -0.172 4.172 16 N -0.518 5.518 17 Si 0.752 3.248 18 H -0.191 1.191 19 H -0.205 1.205 20 H -0.209 1.209 21 C 0.094 3.906 22 C -0.072 4.072 23 N -0.155 5.155 24 H 0.085 0.915 25 H 0.083 0.917 26 H 0.090 0.910 27 H 0.154 0.846 28 H 0.178 0.822 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.097 0.903 35 H 0.083 0.917 36 H 0.144 0.856 37 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.119 9.304 10.436 16.692 hybrid contribution -1.037 0.163 -0.937 1.407 sum 8.081 9.467 9.499 15.658 Atomic orbital electron populations 1.20533 0.89798 1.03123 1.02036 1.18850 0.97497 0.91594 1.04656 1.20037 0.92888 0.99185 1.03605 1.25483 0.99669 0.98997 1.11616 1.84241 1.06452 1.00470 1.73438 1.24363 0.95295 0.99312 1.08908 1.20262 1.00838 0.89425 0.98619 1.21262 1.02443 0.95311 0.94047 1.21631 1.02019 0.97510 0.96509 1.20176 0.83506 0.81477 0.90366 1.90546 1.54992 1.53747 1.46252 1.43677 1.55447 1.11910 1.05653 1.19759 1.26519 1.13787 0.83922 0.87422 1.25260 0.93910 0.98602 0.99459 1.69866 1.16394 1.28189 1.37306 0.85879 0.78452 0.79161 0.81340 1.19122 1.20476 1.20930 1.18731 0.84098 0.98750 0.89028 1.29371 0.95268 0.92004 0.90524 1.80928 1.11719 1.10031 1.12779 0.91482 0.91662 0.90998 0.84616 0.82209 0.89951 0.90777 0.91121 0.91082 0.89987 0.90324 0.91735 0.85583 0.89815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.03 9.60 36.01 0.35 -0.69 16 2 C -0.11 -1.38 5.80 -106.25 -0.62 -2.00 16 3 C -0.13 -1.38 9.98 -41.21 -0.41 -1.79 16 4 C -0.22 -2.33 11.23 29.04 0.33 -2.00 16 5 S 0.09 1.02 23.33 -107.50 -2.51 -1.49 16 6 C -0.16 -2.03 5.76 -36.00 -0.21 -2.23 16 7 C -0.05 -0.63 5.07 -27.88 -0.14 -0.78 16 8 C -0.09 -1.41 4.49 -26.73 -0.12 -1.53 16 9 C -0.14 -2.22 4.30 -27.88 -0.12 -2.34 16 10 C 0.46 10.11 7.57 -10.99 -0.08 10.03 16 11 O -0.57 -14.85 15.63 5.55 0.09 -14.76 16 12 N -0.45 -10.26 2.60 -117.94 -0.31 -10.57 16 13 C -0.31 -8.03 9.32 -14.93 -0.14 -8.17 16 14 H 0.11 2.94 7.39 -52.49 -0.39 2.55 16 15 C 0.03 0.76 4.86 -17.47 -0.08 0.68 16 16 N -0.88 -22.06 9.48 55.50 0.53 -21.53 16 17 Si 0.93 19.59 29.60 -169.99 -5.03 14.55 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 20 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 21 C 0.22 4.28 4.91 -6.83 -0.03 4.25 16 22 C 0.25 5.34 12.95 -20.73 -0.27 5.07 16 23 N -0.47 -11.09 18.54 42.18 0.78 -10.31 16 24 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 26 H 0.07 0.84 6.95 -51.93 -0.36 0.48 16 27 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 29 H 0.08 0.93 7.33 -51.93 -0.38 0.55 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 1.16 8.10 -51.93 -0.42 0.74 16 32 H 0.07 1.21 7.79 -51.93 -0.40 0.81 16 33 H 0.08 1.09 7.42 -51.93 -0.39 0.71 16 34 H 0.08 1.25 7.51 -51.93 -0.39 0.86 16 35 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.13 2.51 6.46 -51.93 -0.34 2.18 16 37 H 0.08 1.21 6.68 -51.93 -0.35 0.86 16 LS Contribution 330.81 15.07 4.99 4.99 Total: -1.00 -30.87 330.81 -7.68 -38.55 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -4.66 Total: 2.07 kcal Atomic # 6 Polarization: 0.06 SS G_CDS: -1.55 Total: -1.50 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 1.00 Total: -42.41 kcal Atomic # 8 Polarization: -14.85 SS G_CDS: 0.09 Total: -14.76 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.03 Total: 14.55 kcal Atomic # 16 Polarization: 1.02 SS G_CDS: -2.51 Total: -1.49 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.87 -7.68 -38.55 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346796522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.592 kcal (2) G-P(sol) polarization free energy of solvation -30.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.547 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds