Wall clock time and date at job start Tue Mar 31 2020 06:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38429 * 122.53747 * 2 1 4 4 C 1.33383 * 114.91872 * 180.27489 * 3 2 1 5 5 S 1.75875 * 109.59641 * 359.77496 * 4 3 2 6 6 C 1.33382 * 122.54246 * 179.83909 * 2 1 3 7 7 C 1.50702 * 125.20250 * 0.02562 * 6 2 1 8 8 C 1.52997 * 109.46914 * 89.72328 * 7 6 2 9 9 C 1.53003 * 109.47307 * 179.97438 * 8 7 6 10 10 C 1.50698 * 109.47356 * 179.97438 * 9 8 7 11 11 O 1.21291 * 119.99893 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99905 * 180.02562 * 10 9 8 13 13 C 1.37104 * 120.00230 * 180.02562 * 12 10 9 14 14 H 1.08002 * 119.99732 * 17.72018 * 13 12 10 15 15 C 1.38943 * 120.00136 * 197.72213 * 13 12 10 16 16 N 1.31411 * 119.99935 * 21.42378 * 15 13 12 17 17 Si 1.86797 * 119.99984 * 201.41613 * 15 13 12 18 18 H 1.48503 * 109.47296 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47271 * 120.00593 * 17 15 13 20 20 H 1.48507 * 109.47370 * 240.00145 * 17 15 13 21 21 C 1.46504 * 120.00399 * 0.02562 * 12 10 9 22 22 C 1.47203 * 109.46665 * 84.23037 * 21 12 10 23 23 N 7.68401 * 57.83533 * 190.14838 * 2 1 3 24 24 H 1.09005 * 109.46857 * 270.16414 * 1 2 3 25 25 H 1.08996 * 109.47615 * 30.16146 * 1 2 3 26 26 H 1.08994 * 109.47178 * 150.17003 * 1 2 3 27 27 H 1.08002 * 122.54169 * 0.04993 * 3 2 1 28 28 H 1.08008 * 125.19863 * 179.75173 * 4 3 2 29 29 H 1.08996 * 109.47133 * 329.72434 * 7 6 2 30 30 H 1.09004 * 109.47055 * 209.72047 * 7 6 2 31 31 H 1.08997 * 109.47400 * 59.99633 * 8 7 6 32 32 H 1.08999 * 109.47262 * 300.00158 * 8 7 6 33 33 H 1.08999 * 109.47124 * 300.00286 * 9 8 7 34 34 H 1.09005 * 109.46400 * 59.99810 * 9 8 7 35 35 H 0.97003 * 119.99991 * 179.97438 * 16 15 13 36 36 H 1.08992 * 109.47590 * 204.23119 * 21 12 10 37 37 H 1.09000 * 109.46845 * 324.23890 * 21 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2515 1.1670 0.0000 4 6 3.5736 0.9902 -0.0058 5 16 3.9386 -0.7303 -0.0052 6 6 2.2245 -1.1244 0.0032 7 6 1.6537 -2.5192 0.0065 8 6 1.4547 -2.9922 -1.4348 9 6 0.8758 -4.4085 -1.4315 10 6 0.6792 -4.8741 -2.8512 11 8 0.9736 -4.1451 -3.7748 12 7 0.1763 -6.1006 -3.0945 13 6 -0.0022 -6.5245 -4.3861 14 1 0.5080 -6.0221 -5.1946 15 6 -0.8393 -7.6004 -4.6548 16 7 -1.7660 -7.9441 -3.7887 17 14 -0.6477 -8.5580 -6.2471 18 1 0.4605 -7.9747 -7.0453 19 1 -0.3402 -9.9774 -5.9373 20 1 -1.9108 -8.4836 -7.0246 21 6 -0.1798 -6.9809 -1.9789 22 6 -1.5364 -6.6544 -1.5101 23 7 -2.5836 -6.4029 -1.1461 24 1 -0.3633 0.0029 1.0277 25 1 -0.3634 0.8885 -0.5163 26 1 -0.3633 -0.8915 -0.5112 27 1 1.7965 2.1465 0.0008 28 1 4.3077 1.7824 -0.0106 29 1 0.6946 -2.5180 0.5242 30 1 2.3420 -3.1921 0.5180 31 1 2.4138 -2.9933 -1.9526 32 1 0.7666 -2.3192 -1.9463 33 1 1.5643 -5.0812 -0.9201 34 1 -0.0833 -4.4076 -0.9136 35 1 -2.3507 -8.6950 -3.9765 36 1 -0.1501 -8.0186 -2.3110 37 1 0.5300 -6.8397 -1.1638 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346796522.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:34:21 Heat of formation + Delta-G solvation = 0.593786 kcal Electronic energy + Delta-G solvation = -20311.726735 eV Core-core repulsion = 17180.090389 eV Total energy + Delta-G solvation = -3131.636347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.65411 -39.40899 -37.61465 -36.24425 -35.52092 -33.73445 -31.87880 -30.07156 -29.08531 -27.31641 -25.88735 -23.74442 -22.61785 -20.63479 -19.71736 -19.23651 -18.32251 -18.04196 -17.69779 -16.49016 -16.46458 -16.02614 -15.85252 -15.03846 -14.94135 -14.70684 -14.59136 -14.05507 -13.89011 -13.71995 -13.40845 -13.31973 -13.13311 -13.04204 -12.91980 -12.75541 -12.49654 -12.46469 -12.33241 -12.19742 -12.06509 -11.98905 -11.66166 -11.42928 -11.10972 -10.38522 -9.89732 -9.43686 -9.18746 -8.39467 -5.94569 0.13131 0.79450 1.15340 1.38490 1.48449 1.60600 1.81778 1.85605 2.09588 2.28039 2.37329 3.01372 3.15827 3.63075 3.82067 3.96079 4.08892 4.12207 4.31740 4.40105 4.52603 4.58597 4.65542 4.75739 4.76150 4.83497 4.84875 4.92365 4.95715 5.12707 5.17341 5.28263 5.42900 5.50085 5.59623 5.71451 6.06884 6.42916 7.03450 7.15366 7.39178 7.97046 8.64444 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025918 B = 0.003418 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.063771 B = 8190.449851 C = 8675.767882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.123 4.123 3 C -0.140 4.140 4 C -0.217 4.217 5 S 0.080 5.920 6 C -0.186 4.186 7 C -0.042 4.042 8 C -0.083 4.083 9 C -0.125 4.125 10 C 0.446 3.554 11 O -0.621 6.621 12 N -0.458 5.458 13 C -0.341 4.341 14 H 0.079 0.921 15 C 0.006 3.994 16 N -0.893 5.893 17 Si 0.984 3.016 18 H -0.273 1.273 19 H -0.262 1.262 20 H -0.290 1.290 21 C 0.221 3.779 22 C 0.259 3.741 23 N -0.509 5.509 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.156 0.844 28 H 0.185 0.815 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.054 0.946 32 H 0.043 0.957 33 H 0.124 0.876 34 H 0.088 0.912 35 H 0.274 0.726 36 H 0.122 0.878 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.052 9.438 11.857 18.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C -0.170 4.170 4 C -0.352 4.352 5 S 0.344 5.656 6 C -0.303 4.303 7 C -0.081 4.081 8 C -0.122 4.122 9 C -0.165 4.165 10 C 0.237 3.763 11 O -0.506 6.506 12 N -0.178 5.178 13 C -0.469 4.469 14 H 0.097 0.903 15 C -0.196 4.196 16 N -0.531 5.531 17 Si 0.808 3.192 18 H -0.197 1.197 19 H -0.186 1.186 20 H -0.216 1.216 21 C 0.095 3.905 22 C -0.059 4.059 23 N -0.190 5.190 24 H 0.099 0.901 25 H 0.092 0.908 26 H 0.076 0.924 27 H 0.174 0.826 28 H 0.203 0.797 29 H 0.110 0.890 30 H 0.111 0.889 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.142 0.858 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.140 0.860 37 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 9.893 9.169 11.943 18.016 hybrid contribution -1.275 0.277 -1.431 1.937 sum 8.618 9.446 10.512 16.552 Atomic orbital electron populations 1.20555 0.89246 1.02836 1.02838 1.19170 0.98205 0.92068 1.04033 1.20297 0.93141 0.99766 1.03842 1.25844 1.00158 0.98890 1.10295 1.84222 1.06084 1.01674 1.73575 1.24481 0.95910 0.99597 1.10361 1.20159 1.01903 0.89772 0.96309 1.21130 1.00711 0.94346 0.95972 1.21632 1.03606 0.98640 0.92580 1.21235 0.81900 0.80755 0.92387 1.90514 1.56662 1.55016 1.48449 1.43861 1.55400 1.12858 1.05728 1.19627 1.27451 1.14833 0.84974 0.90324 1.25841 0.93154 0.98556 1.02063 1.69941 1.16457 1.28284 1.38463 0.85019 0.77586 0.78600 0.77949 1.19743 1.18645 1.21613 1.19091 0.84143 0.97725 0.89547 1.29822 0.95488 0.91004 0.89578 1.80933 1.12756 1.11188 1.14120 0.90079 0.90820 0.92412 0.82642 0.79738 0.89006 0.88878 0.92679 0.93779 0.85849 0.89362 0.91612 0.86005 0.84011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.96 9.60 71.24 0.68 -1.28 16 2 C -0.12 -2.82 5.80 -20.92 -0.12 -2.95 16 3 C -0.14 -2.82 9.98 21.22 0.21 -2.60 16 4 C -0.22 -4.11 11.23 66.72 0.75 -3.37 16 5 S 0.08 1.72 23.33 -56.49 -1.32 0.40 16 6 C -0.19 -4.46 5.76 24.59 0.14 -4.32 16 7 C -0.04 -0.96 5.07 29.85 0.15 -0.81 16 8 C -0.08 -2.48 4.49 30.59 0.14 -2.35 16 9 C -0.12 -3.83 4.30 29.85 0.13 -3.70 16 10 C 0.45 19.77 7.57 87.66 0.66 20.43 16 11 O -0.62 -33.18 15.63 -3.07 -0.05 -33.23 16 12 N -0.46 -20.90 2.60 -645.43 -1.68 -22.58 16 13 C -0.34 -17.78 9.32 84.04 0.78 -16.99 16 14 H 0.08 4.48 7.39 -2.91 -0.02 4.46 16 15 C 0.01 0.29 4.86 84.92 0.41 0.70 16 16 N -0.89 -44.28 9.48 21.66 0.21 -44.08 16 17 Si 0.98 40.11 29.60 68.60 2.03 42.14 16 18 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 19 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 20 H -0.29 -12.09 7.11 99.48 0.71 -11.38 16 21 C 0.22 8.12 4.91 84.57 0.42 8.53 16 22 C 0.26 10.83 12.95 89.43 1.16 11.99 16 23 N -0.51 -23.36 18.54 20.02 0.37 -22.98 16 24 H 0.08 1.40 8.14 -2.38 -0.02 1.39 16 25 H 0.07 1.35 8.13 -2.39 -0.02 1.33 16 26 H 0.06 1.34 6.95 -2.39 -0.02 1.32 16 27 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 28 H 0.19 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.09 1.89 7.33 -2.39 -0.02 1.87 16 30 H 0.09 1.74 8.14 -2.38 -0.02 1.72 16 31 H 0.05 1.80 8.10 -2.39 -0.02 1.78 16 32 H 0.04 1.53 7.79 -2.39 -0.02 1.52 16 33 H 0.12 2.78 7.42 -2.39 -0.02 2.76 16 34 H 0.09 2.60 7.51 -2.38 -0.02 2.58 16 35 H 0.27 13.09 8.31 -92.71 -0.77 12.32 16 36 H 0.12 4.64 6.46 -2.39 -0.02 4.63 16 37 H 0.14 3.50 6.68 -2.39 -0.02 3.49 16 Total: -1.00 -68.40 330.81 6.16 -62.24 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 1.08 Total: 14.79 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 5.51 Total: 3.30 kcal Atomic # 7 Polarization: -88.54 SS G_CDS: -1.10 Total: -89.64 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.05 Total: -33.23 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 2.03 Total: 42.14 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.32 Total: 0.40 kcal Total: -68.40 6.16 -62.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346796522.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.829 kcal (2) G-P(sol) polarization free energy of solvation -68.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds