Wall clock time and date at job start Tue Mar 31 2020 06:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46973 * 2 1 4 4 C 1.50695 * 109.47543 * 120.00207 * 2 1 3 5 5 O 1.21289 * 119.99390 * 95.30853 * 4 2 1 6 6 N 1.34770 * 120.00167 * 275.31386 * 4 2 1 7 7 C 1.46500 * 120.00339 * 5.85776 * 6 4 2 8 8 C 1.50695 * 109.46752 * 93.65060 * 7 6 4 9 9 H 1.07999 * 120.00422 * 359.97438 * 8 7 6 10 10 C 1.37883 * 119.99563 * 180.02562 * 8 7 6 11 11 N 1.31518 * 120.00175 * 0.02562 * 10 8 7 12 12 Si 1.86804 * 119.99803 * 179.97438 * 10 8 7 13 13 H 1.48493 * 109.46979 * 60.00424 * 12 10 8 14 14 H 1.48501 * 109.47083 * 180.02562 * 12 10 8 15 15 H 1.48497 * 109.47145 * 300.00163 * 12 10 8 16 16 C 1.46509 * 119.99920 * 185.86534 * 6 4 2 17 17 C 1.52993 * 109.47228 * 84.55623 * 16 6 4 18 18 C 1.47200 * 109.46786 * 183.22967 * 17 16 6 19 19 N 6.93466 * 123.66208 * 108.59654 * 2 1 3 20 20 C 1.50701 * 109.47115 * 240.00907 * 2 1 3 21 21 C 1.38415 * 122.54361 * 119.99584 * 20 2 1 22 22 C 1.33394 * 114.92285 * 179.97438 * 21 20 2 23 23 S 1.75883 * 109.59331 * 0.02562 * 22 21 20 24 24 C 1.33392 * 122.53747 * 299.70466 * 20 2 1 25 25 H 1.09001 * 109.46766 * 173.50494 * 1 2 3 26 26 H 1.09002 * 109.46842 * 293.49620 * 1 2 3 27 27 H 1.08999 * 109.47367 * 53.50330 * 1 2 3 28 28 H 1.09000 * 109.47370 * 213.65349 * 7 6 4 29 29 H 1.09000 * 109.46753 * 333.65292 * 7 6 4 30 30 H 0.96995 * 119.99803 * 179.97438 * 11 10 8 31 31 H 1.09003 * 109.46862 * 204.56186 * 16 6 4 32 32 H 1.09005 * 109.46976 * 324.55297 * 16 6 4 33 33 H 1.08997 * 109.47472 * 303.22821 * 17 16 6 34 34 H 1.08999 * 109.47394 * 63.23405 * 17 16 6 35 35 H 1.08005 * 122.54027 * 359.95745 * 21 20 2 36 36 H 1.08001 * 125.19797 * 179.97438 * 22 21 20 37 37 H 1.08005 * 125.20213 * 0.02585 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0325 -0.7104 1.2304 5 8 2.3262 -1.8858 1.1743 6 7 2.1552 -0.0397 2.3929 7 6 1.6809 1.3426 2.4947 8 6 0.2687 1.3516 3.0206 9 1 -0.2261 0.4208 3.2552 10 6 -0.3919 2.5483 3.2014 11 7 0.2102 3.6818 2.9144 12 14 -2.1427 2.5594 3.8527 13 1 -2.1755 1.9252 5.1950 14 1 -2.6239 3.9606 3.9549 15 1 -3.0206 1.8014 2.9254 16 6 2.7632 -0.6930 3.5548 17 6 4.2853 -0.5606 3.4758 18 6 4.8997 -1.2831 4.6016 19 7 5.3739 -1.8407 5.4705 20 6 2.0324 -0.7102 -1.2306 21 6 2.8305 -0.0887 -2.1753 22 6 3.1883 -0.8594 -3.2036 23 16 2.4988 -2.4652 -3.0051 24 6 1.7461 -1.9872 -1.4891 25 1 -0.3633 -1.0211 -0.1163 26 1 -0.3633 0.4097 0.9425 27 1 -0.3634 0.6112 -0.8261 28 1 2.3257 1.8988 3.1752 29 1 1.7047 1.8084 1.5095 30 1 -0.2547 4.5235 3.0413 31 1 2.4039 -0.2182 4.4678 32 1 2.4902 -1.7483 3.5625 33 1 4.6387 -0.9845 2.5359 34 1 4.5615 0.4927 3.5261 35 1 3.1400 0.9423 -2.0868 36 1 3.8061 -0.5450 -4.0318 37 1 1.1425 -2.6287 -0.8642 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348639787.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:55:26 Heat of formation + Delta-G solvation = 5.388137 kcal Electronic energy + Delta-G solvation = -20975.519234 eV Core-core repulsion = 17844.090786 eV Total energy + Delta-G solvation = -3131.428448 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.21932 -38.86646 -37.81523 -36.68707 -34.74748 -33.98553 -32.15995 -29.53175 -28.97044 -26.44030 -25.34077 -24.83246 -23.07307 -20.22079 -19.27133 -18.72366 -18.62702 -18.20266 -17.68393 -16.97780 -16.31850 -15.90957 -15.75718 -15.59449 -14.82815 -14.55046 -14.31483 -14.19875 -13.85944 -13.71551 -13.56837 -13.45484 -13.26805 -13.05777 -13.02981 -12.88661 -12.67729 -12.55856 -12.34607 -12.17304 -12.00045 -11.76940 -11.62586 -11.44524 -10.60295 -10.38047 -9.56176 -9.44464 -9.17877 -8.11696 -6.21249 0.23657 0.87083 1.17558 1.47159 1.50821 1.55066 1.60222 1.77102 1.84202 1.88490 2.37912 2.50958 3.18009 3.20693 3.83348 3.96978 4.14175 4.16091 4.28933 4.40192 4.52868 4.55411 4.64167 4.82732 4.88655 4.96036 5.03825 5.05730 5.08832 5.25512 5.37786 5.51757 5.58042 5.73869 5.76271 5.91355 6.17120 6.53542 6.63851 6.91149 7.38522 7.50774 8.93317 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.010645 B = 0.005954 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2629.592143 B = 4701.283318 C = 6683.266279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.041 4.041 3 H 0.106 0.894 4 C 0.524 3.476 5 O -0.579 6.579 6 N -0.594 5.594 7 C 0.246 3.754 8 C -0.535 4.535 9 H 0.052 0.948 10 C 0.031 3.969 11 N -0.914 5.914 12 Si 0.938 3.062 13 H -0.278 1.278 14 H -0.287 1.287 15 H -0.273 1.273 16 C 0.124 3.876 17 C -0.030 4.030 18 C 0.245 3.755 19 N -0.490 5.490 20 C -0.103 4.103 21 C -0.138 4.138 22 C -0.210 4.210 23 S 0.089 5.911 24 C -0.187 4.187 25 H 0.049 0.951 26 H 0.074 0.926 27 H 0.070 0.930 28 H 0.032 0.968 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.089 0.911 32 H 0.070 0.930 33 H 0.116 0.884 34 H 0.134 0.866 35 H 0.155 0.845 36 H 0.191 0.809 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.198 -4.191 -10.894 12.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.064 4.064 3 H 0.124 0.876 4 C 0.313 3.687 5 O -0.460 6.460 6 N -0.324 5.324 7 C 0.126 3.874 8 C -0.574 4.574 9 H 0.070 0.930 10 C -0.170 4.170 11 N -0.553 5.553 12 Si 0.765 3.235 13 H -0.203 1.203 14 H -0.212 1.212 15 H -0.198 1.198 16 C -0.001 4.001 17 C -0.071 4.071 18 C -0.072 4.072 19 N -0.168 5.168 20 C -0.116 4.116 21 C -0.168 4.168 22 C -0.345 4.345 23 S 0.352 5.648 24 C -0.323 4.323 25 H 0.069 0.931 26 H 0.093 0.907 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.107 0.893 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.152 0.848 35 H 0.173 0.827 36 H 0.208 0.792 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 5.081 -6.764 -10.474 13.464 hybrid contribution -1.354 1.715 1.224 2.504 sum 3.727 -5.049 -9.250 11.178 Atomic orbital electron populations 1.21800 0.91841 1.01762 1.04219 1.19862 0.97914 0.99691 0.88942 0.87643 1.20663 0.76516 0.86469 0.85087 1.90594 1.52881 1.16787 1.85760 1.48090 1.58395 1.15955 1.09921 1.19285 0.93429 0.76454 0.98255 1.21572 0.99690 0.92260 1.43863 0.92963 1.25409 1.00696 0.95297 0.95549 1.69957 1.38634 0.97936 1.48799 0.85909 0.81636 0.76899 0.79030 1.20347 1.21228 1.19793 1.21143 0.90313 0.98906 0.89728 1.19708 0.94573 1.01296 0.91525 1.29252 0.92217 0.92211 0.93560 1.81205 1.11170 1.11698 1.12735 1.18671 1.01328 0.94219 0.97343 1.20261 0.99983 1.02283 0.94244 1.25816 1.08047 0.95991 1.04670 1.83993 1.48255 1.14059 1.18483 1.25458 1.07155 0.99344 1.00337 0.93142 0.90681 0.91063 0.94983 0.93860 0.92511 0.89263 0.91167 0.86600 0.84827 0.82738 0.79201 0.83106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.55 9.04 71.98 0.65 -3.90 16 2 C -0.04 -1.30 2.19 -12.29 -0.03 -1.33 16 3 H 0.11 3.32 6.14 -2.38 -0.01 3.30 16 4 C 0.52 18.56 6.72 87.66 0.59 19.15 16 5 O -0.58 -22.48 14.46 -3.06 -0.04 -22.53 16 6 N -0.59 -20.65 2.47 -826.15 -2.04 -22.69 16 7 C 0.25 9.83 4.85 85.63 0.42 10.24 16 8 C -0.54 -24.47 7.26 25.60 0.19 -24.28 16 9 H 0.05 2.47 7.81 -2.91 -0.02 2.44 16 10 C 0.03 1.50 5.46 84.66 0.46 1.96 16 11 N -0.91 -45.88 13.29 21.45 0.28 -45.60 16 12 Si 0.94 39.11 29.54 68.60 2.03 41.14 16 13 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 14 H -0.29 -11.92 7.11 99.48 0.71 -11.21 16 15 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 16 C 0.12 3.75 5.38 86.38 0.46 4.22 16 17 C -0.03 -0.71 5.99 28.79 0.17 -0.54 16 18 C 0.24 6.75 15.43 89.44 1.38 8.13 16 19 N -0.49 -16.03 18.54 20.01 0.37 -15.66 16 20 C -0.10 -3.01 4.53 -20.92 -0.09 -3.11 16 21 C -0.14 -3.35 9.92 21.22 0.21 -3.14 16 22 C -0.21 -4.40 11.23 66.72 0.75 -3.65 16 23 S 0.09 2.06 23.34 -56.49 -1.32 0.74 16 24 C -0.19 -5.46 9.01 66.72 0.60 -4.86 16 25 H 0.05 1.60 7.53 -2.39 -0.02 1.58 16 26 H 0.07 2.86 5.57 -2.39 -0.01 2.85 16 27 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 28 H 0.03 1.33 8.10 -2.39 -0.02 1.31 16 29 H 0.04 1.77 5.70 -2.39 -0.01 1.76 16 30 H 0.27 12.93 8.31 -92.71 -0.77 12.16 16 31 H 0.09 2.72 8.03 -2.39 -0.02 2.70 16 32 H 0.07 2.25 7.51 -2.38 -0.02 2.23 16 33 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.16 3.20 8.06 -2.91 -0.02 3.18 16 36 H 0.19 2.72 8.06 -2.91 -0.02 2.69 16 37 H 0.15 4.72 7.48 -2.91 -0.02 4.70 16 Total: -1.00 -56.10 332.69 6.13 -49.98 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: 1.08 Total: 15.73 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: 5.76 Total: -1.10 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.38 Total: -83.95 kcal Atomic # 8 Polarization: -22.48 SS G_CDS: -0.04 Total: -22.53 kcal Atomic # 14 Polarization: 39.11 SS G_CDS: 2.03 Total: 41.14 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.32 Total: 0.74 kcal Total: -56.10 6.13 -49.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348639787.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.365 kcal (2) G-P(sol) polarization free energy of solvation -56.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.977 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds