Wall clock time and date at job start Tue Mar 31 2020 06:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47235 * 2 1 4 4 C 1.38547 * 126.38206 * 270.18961 * 3 2 1 5 5 C 1.38651 * 133.87937 * 359.96367 * 4 3 2 6 6 C 1.37978 * 119.85188 * 180.36423 * 5 4 3 7 7 C 1.38708 * 120.43173 * 359.95223 * 6 5 4 8 8 C 1.37689 * 120.49148 * 0.04455 * 7 6 5 9 9 C 1.39718 * 119.78304 * 359.97438 * 8 7 6 10 10 N 1.35870 * 133.37735 * 180.02562 * 9 8 7 11 11 C 1.31052 * 109.62332 * 179.97438 * 10 9 8 12 12 S 1.76198 * 125.07980 * 179.97438 * 11 10 9 13 13 C 1.81002 * 100.00092 * 0.02562 * 12 11 10 14 14 C 1.52997 * 109.47326 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.47533 * 59.99813 * 14 13 12 16 16 O 1.42905 * 109.47264 * 300.00101 * 14 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 14 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.08993 * 109.47215 * 59.99903 * 1 2 3 26 26 H 1.09002 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46977 * 300.00143 * 1 2 3 28 28 H 1.08998 * 109.47107 * 240.00331 * 2 1 3 29 29 H 1.08999 * 109.47712 * 119.99621 * 2 1 3 30 30 H 1.08001 * 120.07431 * 0.35711 * 5 4 3 31 31 H 1.08005 * 119.78594 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.75214 * 180.02562 * 7 6 5 33 33 H 1.08010 * 120.10230 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47154 * 300.00093 * 13 12 11 35 35 H 1.09001 * 109.47171 * 60.00111 * 13 12 11 36 36 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 37 37 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2888 2.1573 -1.1154 5 6 2.2070 1.9375 -2.4819 6 6 2.5657 2.9384 -3.3613 7 6 3.0072 4.1650 -2.8874 8 6 3.0946 4.4006 -1.5336 9 6 2.7355 3.3973 -0.6300 10 7 2.7128 3.3279 0.7267 11 6 2.2880 2.1456 1.0999 12 16 2.1014 1.6174 2.7705 13 6 2.6408 3.1133 3.6352 14 6 2.5613 2.8857 5.1460 15 1 3.2079 2.0530 5.4227 16 8 1.2132 2.5839 5.5120 17 6 3.0110 4.1309 5.8660 18 1 3.3220 4.9980 5.3023 19 6 3.0244 4.1635 7.2443 20 7 3.4164 5.2504 7.8726 21 14 2.4844 2.6644 8.2194 22 1 3.6582 1.7918 8.4761 23 1 1.8989 3.0997 9.5127 24 1 1.4669 1.9100 7.4443 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8634 0.9849 -2.8572 31 1 2.5019 2.7659 -4.4255 32 1 3.2847 4.9409 -3.5855 33 1 3.4396 5.3579 -1.1715 34 1 3.6689 3.3437 3.3557 35 1 1.9938 3.9459 3.3590 36 1 0.5809 3.2826 5.2951 37 1 3.4261 5.2731 8.8422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352144501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:53 Heat of formation + Delta-G solvation = 20.222490 kcal Electronic energy + Delta-G solvation = -20368.492322 eV Core-core repulsion = 17237.707140 eV Total energy + Delta-G solvation = -3130.785182 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.93531 -37.32709 -36.40054 -35.04060 -32.33694 -31.28446 -30.16648 -29.36628 -29.32122 -25.70376 -24.03611 -23.55778 -22.09457 -20.96506 -20.47161 -17.79972 -17.32529 -17.22798 -16.48013 -15.66533 -14.99322 -14.75865 -14.57244 -14.50290 -14.41003 -14.30455 -13.77702 -13.27484 -13.14237 -12.83881 -12.48058 -12.13887 -12.10705 -11.66684 -11.59145 -11.54160 -11.42544 -11.10432 -10.71561 -10.40694 -10.26265 -10.01027 -9.86829 -9.14820 -8.91929 -8.72180 -8.46273 -8.17539 -7.24931 -6.19470 -4.33081 0.88480 1.36965 1.48066 2.49708 2.69623 2.78080 3.35075 3.44872 3.69408 3.86543 4.33311 4.41750 4.46977 4.75459 4.85452 4.92126 4.97040 5.12564 5.21157 5.27124 5.35538 5.43157 5.53777 5.66396 5.71798 5.77145 5.84853 5.86685 6.06522 6.35759 6.44781 6.51098 6.55492 6.82622 6.93398 7.09521 7.40465 7.81236 8.20271 8.71953 8.90257 9.42061 10.90517 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003971 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.694427 B = 7050.298105 C = 7996.492387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.107 3.893 3 N -0.480 5.480 4 C 0.049 3.951 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.130 4.130 8 C -0.068 4.068 9 C 0.060 3.940 10 N -0.496 5.496 11 C 0.271 3.729 12 S -0.019 6.019 13 C -0.100 4.100 14 C 0.209 3.791 15 H 0.065 0.935 16 O -0.577 6.577 17 C -0.561 4.561 18 H 0.077 0.923 19 C 0.088 3.912 20 N -0.887 5.887 21 Si 0.869 3.131 22 H -0.285 1.285 23 H -0.294 1.294 24 H -0.216 1.216 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.089 0.911 29 H 0.097 0.903 30 H 0.118 0.882 31 H 0.126 0.874 32 H 0.127 0.873 33 H 0.129 0.871 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.360 0.640 37 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.517 -9.767 -20.540 23.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.015 4.015 3 N -0.173 5.173 4 C -0.061 4.061 5 C -0.131 4.131 6 C -0.131 4.131 7 C -0.151 4.151 8 C -0.088 4.088 9 C -0.061 4.061 10 N -0.220 5.220 11 C -0.101 4.101 12 S 0.215 5.785 13 C -0.249 4.249 14 C 0.149 3.851 15 H 0.083 0.917 16 O -0.383 6.383 17 C -0.600 4.600 18 H 0.095 0.905 19 C -0.118 4.118 20 N -0.523 5.523 21 Si 0.695 3.305 22 H -0.212 1.212 23 H -0.220 1.220 24 H -0.138 1.138 25 H 0.079 0.921 26 H 0.096 0.904 27 H 0.089 0.911 28 H 0.107 0.893 29 H 0.115 0.885 30 H 0.136 0.864 31 H 0.144 0.856 32 H 0.145 0.855 33 H 0.147 0.853 34 H 0.115 0.885 35 H 0.111 0.889 36 H 0.207 0.793 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.404 -10.791 -19.163 22.429 hybrid contribution -0.087 0.501 -0.678 0.847 sum -4.491 -10.290 -19.841 22.797 Atomic orbital electron populations 1.22174 0.94025 1.03170 1.03515 1.21804 0.95836 0.79287 1.04530 1.45337 1.55435 1.12684 1.03811 1.18939 1.05118 0.92875 0.89193 1.19859 1.04394 1.00122 0.88729 1.20809 1.00298 0.93109 0.98912 1.20845 1.02114 0.97531 0.94605 1.20305 0.99387 0.97713 0.91419 1.19137 1.03003 0.93630 0.90294 1.71121 1.23414 1.16825 1.10594 1.25952 0.99293 0.89497 0.95393 1.85783 1.82637 1.24241 0.85873 1.24618 1.05554 0.94643 1.00070 1.19624 0.82144 0.97739 0.85585 0.91725 1.86697 1.19183 1.47487 1.84923 1.21316 1.47531 0.99118 0.92066 0.90462 1.24957 0.92766 0.96358 0.97720 1.69936 1.45353 1.27954 1.09082 0.87051 0.80709 0.83832 0.78941 1.21197 1.22014 1.13836 0.92080 0.90425 0.91111 0.89254 0.88500 0.86426 0.85570 0.85509 0.85342 0.88502 0.88926 0.79252 0.92337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 10.24 37.16 0.38 -1.14 16 2 C 0.11 1.08 6.66 -4.04 -0.03 1.05 16 3 N -0.48 -6.82 2.83 -114.33 -0.32 -7.14 16 4 C 0.05 0.71 6.87 -83.84 -0.58 0.13 16 5 C -0.11 -1.24 10.04 -39.52 -0.40 -1.63 16 6 C -0.11 -1.11 10.03 -39.50 -0.40 -1.50 16 7 C -0.13 -1.40 10.01 -39.61 -0.40 -1.80 16 8 C -0.07 -0.93 10.10 -39.23 -0.40 -1.33 16 9 C 0.06 1.00 7.22 -84.69 -0.61 0.38 16 10 N -0.50 -9.29 10.57 -10.91 -0.12 -9.40 16 11 C 0.27 4.61 7.93 -88.45 -0.70 3.91 16 12 S -0.02 -0.31 21.18 -107.50 -2.28 -2.59 16 13 C -0.10 -1.98 4.79 37.16 0.18 -1.80 16 14 C 0.21 4.71 2.36 -27.89 -0.07 4.64 16 15 H 0.07 1.49 7.57 -51.93 -0.39 1.10 16 16 O -0.58 -12.43 9.73 -35.23 -0.34 -12.77 16 17 C -0.56 -15.19 9.34 -34.44 -0.32 -15.51 16 18 H 0.08 2.27 7.99 -52.49 -0.42 1.86 16 19 C 0.09 2.46 5.47 -17.82 -0.10 2.37 16 20 N -0.89 -26.58 13.96 55.43 0.77 -25.81 16 21 Si 0.87 21.15 26.99 -169.99 -4.59 16.56 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 23 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 24 H -0.22 -5.09 5.30 56.52 0.30 -4.79 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 28 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.10 0.95 7.68 -51.93 -0.40 0.55 16 30 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 31 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 32 H 0.13 1.00 8.06 -52.49 -0.42 0.58 16 33 H 0.13 1.63 8.06 -52.48 -0.42 1.21 16 34 H 0.10 1.99 8.14 -51.92 -0.42 1.57 16 35 H 0.09 1.88 8.14 -51.92 -0.42 1.45 16 36 H 0.36 6.92 9.04 45.56 0.41 7.33 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 LS Contribution 327.52 15.07 4.94 4.94 Total: -1.00 -32.29 327.52 -9.63 -41.92 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -4.26 Total: 6.53 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: -3.43 Total: -12.23 kcal Atomic # 7 Polarization: -42.69 SS G_CDS: 0.33 Total: -42.35 kcal Atomic # 8 Polarization: -12.43 SS G_CDS: -0.34 Total: -12.77 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.59 Total: 16.56 kcal Atomic # 16 Polarization: -0.31 SS G_CDS: -2.28 Total: -2.59 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.29 -9.63 -41.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352144501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.142 kcal (2) G-P(sol) polarization free energy of solvation -32.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds