Wall clock time and date at job start Tue Mar 31 2020 06:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47235 * 2 1 4 4 C 1.38547 * 126.38206 * 270.18961 * 3 2 1 5 5 C 1.38651 * 133.87937 * 359.96367 * 4 3 2 6 6 C 1.37978 * 119.85188 * 180.36423 * 5 4 3 7 7 C 1.38708 * 120.43173 * 359.95223 * 6 5 4 8 8 C 1.37689 * 120.49148 * 0.04455 * 7 6 5 9 9 C 1.39718 * 119.78304 * 359.97438 * 8 7 6 10 10 N 1.35870 * 133.37735 * 180.02562 * 9 8 7 11 11 C 1.31052 * 109.62332 * 179.97438 * 10 9 8 12 12 S 1.76198 * 125.07980 * 179.97438 * 11 10 9 13 13 C 1.81002 * 100.00092 * 0.02562 * 12 11 10 14 14 C 1.52997 * 109.47326 * 179.97438 * 13 12 11 15 15 H 1.08998 * 109.47533 * 59.99813 * 14 13 12 16 16 O 1.42905 * 109.47264 * 300.00101 * 14 13 12 17 17 C 1.50697 * 109.47466 * 179.97438 * 14 13 12 18 18 H 1.08001 * 119.99890 * 0.02562 * 17 14 13 19 19 C 1.37876 * 120.00428 * 179.97438 * 17 14 13 20 20 N 1.31517 * 120.00362 * 180.02562 * 19 17 14 21 21 Si 1.86804 * 119.99850 * 359.97438 * 19 17 14 22 22 H 1.48504 * 109.47052 * 89.99717 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99656 * 21 19 17 24 24 H 1.48500 * 109.47143 * 330.00164 * 21 19 17 25 25 H 1.08993 * 109.47215 * 59.99903 * 1 2 3 26 26 H 1.09002 * 109.46978 * 180.02562 * 1 2 3 27 27 H 1.09009 * 109.46977 * 300.00143 * 1 2 3 28 28 H 1.08998 * 109.47107 * 240.00331 * 2 1 3 29 29 H 1.08999 * 109.47712 * 119.99621 * 2 1 3 30 30 H 1.08001 * 120.07431 * 0.35711 * 5 4 3 31 31 H 1.08005 * 119.78594 * 179.97438 * 6 5 4 32 32 H 1.08000 * 119.75214 * 180.02562 * 7 6 5 33 33 H 1.08010 * 120.10230 * 179.97438 * 8 7 6 34 34 H 1.09002 * 109.47154 * 300.00093 * 13 12 11 35 35 H 1.09001 * 109.47171 * 60.00111 * 13 12 11 36 36 H 0.96696 * 114.00036 * 299.99911 * 16 14 13 37 37 H 0.96994 * 119.99814 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2888 2.1573 -1.1154 5 6 2.2070 1.9375 -2.4819 6 6 2.5657 2.9384 -3.3613 7 6 3.0072 4.1650 -2.8874 8 6 3.0946 4.4006 -1.5336 9 6 2.7355 3.3973 -0.6300 10 7 2.7128 3.3279 0.7267 11 6 2.2880 2.1456 1.0999 12 16 2.1014 1.6174 2.7705 13 6 2.6408 3.1133 3.6352 14 6 2.5613 2.8857 5.1460 15 1 3.2079 2.0530 5.4227 16 8 1.2132 2.5839 5.5120 17 6 3.0110 4.1309 5.8660 18 1 3.3220 4.9980 5.3023 19 6 3.0244 4.1635 7.2443 20 7 3.4164 5.2504 7.8726 21 14 2.4844 2.6644 8.2194 22 1 3.6582 1.7918 8.4761 23 1 1.8989 3.0997 9.5127 24 1 1.4669 1.9100 7.4443 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8634 0.9849 -2.8572 31 1 2.5019 2.7659 -4.4255 32 1 3.2847 4.9409 -3.5855 33 1 3.4396 5.3579 -1.1715 34 1 3.6689 3.3437 3.3557 35 1 1.9938 3.9459 3.3590 36 1 0.5809 3.2826 5.2951 37 1 3.4261 5.2731 8.8422 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352144501.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:52 Heat of formation + Delta-G solvation = -0.666839 kcal Electronic energy + Delta-G solvation = -20369.398151 eV Core-core repulsion = 17237.707140 eV Total energy + Delta-G solvation = -3131.691011 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.99497 -38.27555 -38.20285 -36.01078 -34.47624 -32.16941 -31.89089 -30.39831 -30.29684 -27.69871 -24.87205 -24.66584 -23.17326 -22.62662 -21.54213 -19.65034 -18.53320 -18.25767 -17.53913 -16.95395 -16.74207 -16.31307 -16.24235 -15.79913 -15.38531 -15.22317 -14.88205 -14.76132 -14.62862 -13.98296 -13.64000 -13.55249 -13.20483 -13.01235 -12.93335 -12.71828 -12.57936 -12.39390 -12.23583 -12.09499 -11.68824 -11.41608 -11.15221 -11.00117 -10.85323 -10.34334 -10.03028 -9.14236 -8.49872 -8.37851 -6.55784 -0.12374 0.07325 0.53687 1.05892 1.41813 1.46944 1.58769 1.74452 1.75768 2.42551 2.88330 2.98996 3.34533 3.64021 3.87370 3.95509 4.02186 4.05040 4.11450 4.12374 4.26897 4.36668 4.40664 4.48761 4.71422 4.77665 4.86344 4.88156 5.14882 5.18389 5.26070 5.34796 5.40347 5.55166 5.56834 5.92870 5.94762 6.03965 6.56356 6.68146 7.07259 7.25437 8.76163 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025249 B = 0.003971 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.694427 B = 7050.298105 C = 7996.492387 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.097 3.903 3 N -0.473 5.473 4 C 0.038 3.962 5 C -0.110 4.110 6 C -0.098 4.098 7 C -0.119 4.119 8 C -0.095 4.095 9 C 0.014 3.986 10 N -0.538 5.538 11 C 0.244 3.756 12 S 0.021 5.979 13 C -0.097 4.097 14 C 0.221 3.779 15 H 0.068 0.932 16 O -0.573 6.573 17 C -0.566 4.566 18 H 0.036 0.964 19 C 0.033 3.967 20 N -0.936 5.936 21 Si 0.938 3.062 22 H -0.281 1.281 23 H -0.295 1.295 24 H -0.199 1.199 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.048 0.952 28 H 0.119 0.881 29 H 0.098 0.902 30 H 0.151 0.849 31 H 0.169 0.831 32 H 0.159 0.841 33 H 0.122 0.878 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.373 0.627 37 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.695 -12.664 -23.452 27.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.023 4.023 3 N -0.165 5.165 4 C -0.072 4.072 5 C -0.131 4.131 6 C -0.118 4.118 7 C -0.139 4.139 8 C -0.116 4.116 9 C -0.106 4.106 10 N -0.263 5.263 11 C -0.129 4.129 12 S 0.254 5.746 13 C -0.246 4.246 14 C 0.161 3.839 15 H 0.085 0.915 16 O -0.380 6.380 17 C -0.605 4.605 18 H 0.054 0.946 19 C -0.168 4.168 20 N -0.574 5.574 21 Si 0.761 3.239 22 H -0.208 1.208 23 H -0.222 1.222 24 H -0.121 1.121 25 H 0.079 0.921 26 H 0.125 0.875 27 H 0.067 0.933 28 H 0.137 0.863 29 H 0.116 0.884 30 H 0.168 0.832 31 H 0.187 0.813 32 H 0.177 0.823 33 H 0.140 0.860 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.221 0.779 37 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.596 -13.701 -22.106 26.602 hybrid contribution 0.294 1.484 -0.053 1.513 sum -5.302 -12.218 -22.159 25.853 Atomic orbital electron populations 1.22142 0.93012 1.04689 1.02360 1.22196 0.96654 0.77375 1.06080 1.45538 1.54510 1.13649 1.02840 1.19333 1.05273 0.92153 0.90452 1.20333 1.03622 1.01938 0.87193 1.21375 0.97618 0.91902 1.00866 1.21283 1.00147 0.98879 0.93567 1.20547 1.00854 0.97405 0.92748 1.19602 1.05318 0.95824 0.89836 1.70981 1.24465 1.18251 1.12629 1.25807 1.01027 0.90110 0.95936 1.85294 1.82690 1.20880 0.85744 1.24166 1.04565 0.96651 0.99221 1.19291 0.82455 0.95410 0.86751 0.91479 1.86615 1.18618 1.47814 1.85003 1.21600 1.46868 0.99769 0.92305 0.94594 1.25866 0.92815 0.99210 0.98903 1.70070 1.47479 1.30370 1.09531 0.85989 0.80605 0.80076 0.77183 1.20775 1.22169 1.12096 0.92136 0.87502 0.93320 0.86306 0.88362 0.83168 0.81310 0.82308 0.85950 0.90154 0.90191 0.77901 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.51 10.24 71.98 0.74 -1.77 16 2 C 0.10 1.72 6.66 86.38 0.58 2.29 16 3 N -0.47 -12.96 2.83 -515.62 -1.46 -14.42 16 4 C 0.04 1.06 6.87 38.72 0.27 1.32 16 5 C -0.11 -2.08 10.04 22.31 0.22 -1.85 16 6 C -0.10 -1.52 10.03 22.32 0.22 -1.29 16 7 C -0.12 -2.22 10.01 22.25 0.22 -2.00 16 8 C -0.10 -2.61 10.10 22.50 0.23 -2.39 16 9 C 0.01 0.48 7.22 39.42 0.28 0.77 16 10 N -0.54 -21.12 10.57 -188.43 -1.99 -23.11 16 11 C 0.24 8.45 7.93 179.59 1.42 9.87 16 12 S 0.02 0.72 21.18 -56.49 -1.20 -0.48 16 13 C -0.10 -3.98 4.79 71.98 0.34 -3.64 16 14 C 0.22 10.06 2.36 29.85 0.07 10.13 16 15 H 0.07 3.06 7.57 -2.39 -0.02 3.04 16 16 O -0.57 -24.11 9.73 -148.98 -1.45 -25.56 16 17 C -0.57 -31.85 9.34 25.60 0.24 -31.61 16 18 H 0.04 2.26 7.99 -2.91 -0.02 2.24 16 19 C 0.03 1.88 5.47 84.65 0.46 2.34 16 20 N -0.94 -58.03 13.96 21.45 0.30 -57.74 16 21 Si 0.94 43.99 26.99 68.60 1.85 45.84 16 22 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 23 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 24 H -0.20 -8.75 5.30 99.48 0.53 -8.22 16 25 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 26 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 27 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 28 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.10 1.71 7.68 -2.39 -0.02 1.69 16 30 H 0.15 1.82 8.06 -2.91 -0.02 1.80 16 31 H 0.17 1.24 8.06 -2.91 -0.02 1.22 16 32 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 33 H 0.12 3.30 8.06 -2.91 -0.02 3.28 16 34 H 0.08 3.53 8.14 -2.39 -0.02 3.51 16 35 H 0.08 3.44 8.14 -2.39 -0.02 3.42 16 36 H 0.37 14.05 9.04 -74.06 -0.67 13.38 16 37 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -73.96 327.52 1.59 -72.37 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.23 Total: 20.93 kcal Atomic # 6 Polarization: -23.13 SS G_CDS: 5.30 Total: -17.83 kcal Atomic # 7 Polarization: -92.12 SS G_CDS: -3.15 Total: -95.27 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -1.45 Total: -25.56 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.85 Total: 45.84 kcal Atomic # 16 Polarization: 0.72 SS G_CDS: -1.20 Total: -0.48 kcal Total: -73.96 1.59 -72.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352144501.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.704 kcal (2) G-P(sol) polarization free energy of solvation -73.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds