Wall clock time and date at job start Tue Mar 31 2020 06:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47389 * 2 1 4 4 C 1.36931 * 119.99728 * 93.46323 * 3 2 1 5 5 H 1.08008 * 119.99348 * 214.54739 * 4 3 2 6 6 C 1.38812 * 120.00563 * 34.26899 * 4 3 2 7 7 N 1.31621 * 119.99809 * 22.09772 * 6 4 3 8 8 Si 1.86802 * 120.00080 * 202.09472 * 6 4 3 9 9 H 1.48500 * 109.47106 * 60.00241 * 8 6 4 10 10 H 1.48502 * 109.46855 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47044 * 299.99944 * 8 6 4 12 12 C 1.46501 * 119.99965 * 273.45961 * 3 2 1 13 13 C 1.50698 * 109.47161 * 270.00245 * 12 3 2 14 14 N 1.28017 * 124.78206 * 89.70196 * 13 12 3 15 15 C 1.34758 * 118.10881 * 179.77208 * 14 13 12 16 16 C 1.41170 * 128.81934 * 180.21563 * 15 14 13 17 17 C 1.36045 * 120.62972 * 180.29803 * 16 15 14 18 18 C 1.39231 * 120.72725 * 0.02562 * 17 16 15 19 19 O 1.35956 * 120.06538 * 179.97438 * 18 17 16 20 20 C 1.42900 * 116.99818 * 359.97438 * 19 18 17 21 21 C 1.38076 * 119.87184 * 359.97136 * 18 17 16 22 22 C 1.39382 * 119.97937 * 0.04913 * 21 18 17 23 23 S 1.75827 * 124.77652 * 269.99733 * 13 12 3 24 24 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46935 * 300.00176 * 1 2 3 26 26 H 1.09003 * 109.46648 * 60.00247 * 1 2 3 27 27 H 1.09006 * 109.47271 * 239.99744 * 2 1 3 28 28 H 1.09003 * 109.47217 * 120.00260 * 2 1 3 29 29 H 0.96992 * 119.99914 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46598 * 30.00192 * 12 3 2 31 31 H 1.08999 * 109.46730 * 149.99953 * 12 3 2 32 32 H 1.08005 * 119.68274 * 0.32216 * 16 15 14 33 33 H 1.07996 * 119.63687 * 180.02562 * 17 16 15 34 34 H 1.09004 * 109.46891 * 299.99426 * 20 19 18 35 35 H 1.08998 * 109.47258 * 60.00006 * 20 19 18 36 36 H 1.08998 * 109.46806 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00807 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3142 2.0028 1.1837 5 1 2.1321 3.0612 1.2980 6 6 2.8425 1.2715 2.2387 7 7 3.4581 0.1316 2.0061 8 14 2.6801 1.9053 3.9884 9 1 1.2423 2.0444 4.3329 10 1 3.3233 0.9475 4.9234 11 1 3.3460 3.2279 4.0996 12 6 2.1904 2.0973 -1.2664 13 6 3.5864 1.8700 -1.7864 14 7 3.9305 0.9089 -2.5588 15 6 5.2190 0.8364 -2.9470 16 6 5.8377 -0.1135 -3.7883 17 6 7.1665 -0.0303 -4.0679 18 6 7.9440 0.9920 -3.5305 19 8 9.2709 1.0619 -3.8185 20 6 9.8019 0.0525 -4.6795 21 6 7.3649 1.9347 -2.7045 22 6 6.0047 1.8609 -2.4096 23 16 4.9736 2.8834 -1.4118 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8276 -0.3792 2.7432 30 1 1.4672 1.7281 -1.9936 31 1 2.0318 3.1636 -1.1053 32 1 5.2504 -0.9135 -4.2143 33 1 7.6233 -0.7654 -4.7139 34 1 9.6518 -0.9274 -4.2263 35 1 9.2910 0.0901 -5.6416 36 1 10.8678 0.2253 -4.8276 37 1 7.9659 2.7289 -2.2867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355613832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:41 Heat of formation + Delta-G solvation = 38.744073 kcal Electronic energy + Delta-G solvation = -20644.838372 eV Core-core repulsion = 17514.856346 eV Total energy + Delta-G solvation = -3129.982026 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.18834 -38.60060 -36.38651 -35.07935 -31.73612 -31.04271 -30.34225 -28.67936 -27.40781 -26.14038 -23.86795 -23.13690 -22.22684 -20.66967 -19.68831 -18.43431 -17.16335 -16.70497 -16.10323 -15.75282 -15.42748 -14.93612 -14.42728 -14.07125 -13.80431 -13.56283 -13.51542 -13.13905 -12.77167 -12.53891 -12.38079 -11.95222 -11.74635 -11.48192 -11.43410 -11.04714 -10.90557 -10.68836 -10.42761 -10.31292 -10.12170 -10.06781 -9.67659 -9.65395 -8.93600 -8.60592 -7.81894 -7.46548 -6.84393 -5.96473 -3.48575 1.01416 1.39921 1.91908 2.48424 2.89615 3.30591 3.34164 3.36541 3.38170 4.05675 4.36437 4.53814 4.84826 5.02755 5.05081 5.11150 5.20332 5.31996 5.37220 5.42249 5.65752 5.93578 6.00129 6.11541 6.26656 6.30544 6.36619 6.42587 6.51837 6.54538 6.63490 6.85152 6.88284 7.21661 7.42024 7.62663 7.71101 8.30963 8.39824 8.98255 9.58639 10.14891 11.02306 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.004529 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.379609 B = 6180.356714 C = 6692.759577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 N -0.556 5.556 4 C -0.265 4.265 5 H 0.070 0.930 6 C 0.018 3.982 7 N -0.872 5.872 8 Si 0.903 3.097 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 C 0.201 3.799 13 C 0.148 3.852 14 N -0.486 5.486 15 C 0.067 3.933 16 C -0.037 4.037 17 C -0.189 4.189 18 C 0.118 3.882 19 O -0.317 6.317 20 C 0.029 3.971 21 C -0.106 4.106 22 C -0.150 4.150 23 S 0.042 5.958 24 H 0.037 0.963 25 H 0.050 0.950 26 H 0.035 0.965 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.260 0.740 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.131 0.869 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.140 0.465 -11.282 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.009 3.991 3 N -0.274 5.274 4 C -0.396 4.396 5 H 0.088 0.912 6 C -0.185 4.185 7 N -0.512 5.512 8 Si 0.732 3.268 9 H -0.205 1.205 10 H -0.215 1.215 11 H -0.203 1.203 12 C 0.070 3.930 13 C -0.139 4.139 14 N -0.200 5.200 15 C -0.054 4.054 16 C -0.058 4.058 17 C -0.211 4.211 18 C 0.069 3.931 19 O -0.231 6.231 20 C -0.066 4.066 21 C -0.130 4.130 22 C -0.270 4.270 23 S 0.299 5.701 24 H 0.056 0.944 25 H 0.069 0.931 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.116 0.884 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.149 0.851 33 H 0.149 0.851 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 6.013 1.004 -10.598 12.226 hybrid contribution 0.643 -0.810 0.364 1.097 sum 6.657 0.194 -10.234 12.210 Atomic orbital electron populations 1.22246 1.00120 0.99011 1.00594 1.21075 0.90166 0.85384 1.02449 1.44370 1.70690 1.12691 0.99665 1.19197 1.37250 0.94807 0.88355 0.91211 1.25251 0.96006 0.97576 0.99662 1.70001 1.34251 1.15542 1.31378 0.86364 0.78199 0.78418 0.83856 1.20511 1.21451 1.20348 1.20234 0.85284 0.98058 0.89452 1.30085 1.01348 0.90812 0.91704 1.66166 1.15317 1.22282 1.16260 1.19247 0.88275 0.96807 1.01038 1.20139 0.93479 0.96749 0.95425 1.20640 0.94573 1.00474 1.05419 1.18551 0.82742 0.95121 0.96647 1.86047 1.20889 1.51023 1.65173 1.23018 0.99464 0.91039 0.93126 1.19261 0.91723 1.00516 1.01517 1.23441 0.98267 1.01947 1.03333 1.85070 1.03907 1.31561 1.49609 0.94428 0.93093 0.94583 0.95099 0.88426 0.93039 0.90739 0.90974 0.85112 0.85054 0.92681 0.92761 0.88480 0.85178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.14 10.24 37.16 0.38 -2.76 16 2 C 0.13 3.13 5.98 -4.04 -0.02 3.11 16 3 N -0.56 -13.24 2.43 -174.60 -0.42 -13.66 16 4 C -0.27 -6.81 9.49 -15.06 -0.14 -6.95 16 5 H 0.07 1.75 7.92 -52.48 -0.42 1.34 16 6 C 0.02 0.47 4.94 -17.43 -0.09 0.39 16 7 N -0.87 -24.42 11.33 55.49 0.63 -23.79 16 8 Si 0.90 20.75 29.61 -169.99 -5.03 15.72 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 C 0.20 4.14 6.28 -5.19 -0.03 4.11 16 13 C 0.15 3.18 7.12 -13.87 -0.10 3.09 16 14 N -0.49 -10.61 10.56 -7.78 -0.08 -10.70 16 15 C 0.07 1.36 6.95 -84.87 -0.59 0.77 16 16 C -0.04 -0.62 10.04 -39.26 -0.39 -1.01 16 17 C -0.19 -2.70 8.95 -40.00 -0.36 -3.05 16 18 C 0.12 1.81 6.68 -39.27 -0.26 1.55 16 19 O -0.32 -4.27 10.50 -19.60 -0.21 -4.47 16 20 C 0.03 0.25 9.81 101.05 0.99 1.24 16 21 C -0.11 -1.83 10.01 -39.22 -0.39 -2.23 16 22 C -0.15 -2.95 6.53 -38.56 -0.25 -3.20 16 23 S 0.04 0.85 23.37 -107.50 -2.51 -1.66 16 24 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 28 H 0.10 2.57 5.33 -51.93 -0.28 2.30 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.07 1.41 8.07 -51.93 -0.42 0.99 16 31 H 0.07 1.36 8.04 -51.93 -0.42 0.94 16 32 H 0.13 1.90 8.06 -52.48 -0.42 1.48 16 33 H 0.13 1.39 6.28 -52.49 -0.33 1.07 16 34 H 0.05 0.44 7.66 -51.93 -0.40 0.04 16 35 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 36 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.13 2.05 8.06 -52.49 -0.42 1.62 16 LS Contribution 328.18 15.07 4.95 4.95 Total: -1.00 -29.99 328.18 -8.69 -38.68 By element: Atomic # 1 Polarization: 4.63 SS G_CDS: -4.75 Total: -0.11 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.26 Total: -4.95 kcal Atomic # 7 Polarization: -48.27 SS G_CDS: 0.12 Total: -48.15 kcal Atomic # 8 Polarization: -4.27 SS G_CDS: -0.21 Total: -4.47 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: 0.85 SS G_CDS: -2.51 Total: -1.66 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -29.99 -8.69 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355613832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.422 kcal (2) G-P(sol) polarization free energy of solvation -29.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds