Wall clock time and date at job start Tue Mar 31 2020 06:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47389 * 2 1 4 4 C 1.36931 * 119.99728 * 93.46323 * 3 2 1 5 5 H 1.08008 * 119.99348 * 214.54739 * 4 3 2 6 6 C 1.38812 * 120.00563 * 34.26899 * 4 3 2 7 7 N 1.31621 * 119.99809 * 22.09772 * 6 4 3 8 8 Si 1.86802 * 120.00080 * 202.09472 * 6 4 3 9 9 H 1.48500 * 109.47106 * 60.00241 * 8 6 4 10 10 H 1.48502 * 109.46855 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47044 * 299.99944 * 8 6 4 12 12 C 1.46501 * 119.99965 * 273.45961 * 3 2 1 13 13 C 1.50698 * 109.47161 * 270.00245 * 12 3 2 14 14 N 1.28017 * 124.78206 * 89.70196 * 13 12 3 15 15 C 1.34758 * 118.10881 * 179.77208 * 14 13 12 16 16 C 1.41170 * 128.81934 * 180.21563 * 15 14 13 17 17 C 1.36045 * 120.62972 * 180.29803 * 16 15 14 18 18 C 1.39231 * 120.72725 * 0.02562 * 17 16 15 19 19 O 1.35956 * 120.06538 * 179.97438 * 18 17 16 20 20 C 1.42900 * 116.99818 * 359.97438 * 19 18 17 21 21 C 1.38076 * 119.87184 * 359.97136 * 18 17 16 22 22 C 1.39382 * 119.97937 * 0.04913 * 21 18 17 23 23 S 1.75827 * 124.77652 * 269.99733 * 13 12 3 24 24 H 1.09001 * 109.46967 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.46935 * 300.00176 * 1 2 3 26 26 H 1.09003 * 109.46648 * 60.00247 * 1 2 3 27 27 H 1.09006 * 109.47271 * 239.99744 * 2 1 3 28 28 H 1.09003 * 109.47217 * 120.00260 * 2 1 3 29 29 H 0.96992 * 119.99914 * 179.97438 * 7 6 4 30 30 H 1.09004 * 109.46598 * 30.00192 * 12 3 2 31 31 H 1.08999 * 109.46730 * 149.99953 * 12 3 2 32 32 H 1.08005 * 119.68274 * 0.32216 * 16 15 14 33 33 H 1.07996 * 119.63687 * 180.02562 * 17 16 15 34 34 H 1.09004 * 109.46891 * 299.99426 * 20 19 18 35 35 H 1.08998 * 109.47258 * 60.00006 * 20 19 18 36 36 H 1.08998 * 109.46806 * 179.97438 * 20 19 18 37 37 H 1.07998 * 120.00807 * 180.02562 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3142 2.0028 1.1837 5 1 2.1321 3.0612 1.2980 6 6 2.8425 1.2715 2.2387 7 7 3.4581 0.1316 2.0061 8 14 2.6801 1.9053 3.9884 9 1 1.2423 2.0444 4.3329 10 1 3.3233 0.9475 4.9234 11 1 3.3460 3.2279 4.0996 12 6 2.1904 2.0973 -1.2664 13 6 3.5864 1.8700 -1.7864 14 7 3.9305 0.9089 -2.5588 15 6 5.2190 0.8364 -2.9470 16 6 5.8377 -0.1135 -3.7883 17 6 7.1665 -0.0303 -4.0679 18 6 7.9440 0.9920 -3.5305 19 8 9.2709 1.0619 -3.8185 20 6 9.8019 0.0525 -4.6795 21 6 7.3649 1.9347 -2.7045 22 6 6.0047 1.8609 -2.4096 23 16 4.9736 2.8834 -1.4118 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.8934 -0.5139 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 3.8276 -0.3792 2.7432 30 1 1.4672 1.7281 -1.9936 31 1 2.0318 3.1636 -1.1053 32 1 5.2504 -0.9135 -4.2143 33 1 7.6233 -0.7654 -4.7139 34 1 9.6518 -0.9274 -4.2263 35 1 9.2910 0.0901 -5.6416 36 1 10.8678 0.2253 -4.8276 37 1 7.9659 2.7289 -2.2867 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355613832.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:57:40 Heat of formation + Delta-G solvation = 21.312358 kcal Electronic energy + Delta-G solvation = -20645.594268 eV Core-core repulsion = 17514.856346 eV Total energy + Delta-G solvation = -3130.737922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.48086 -39.90042 -38.03590 -36.54364 -33.61703 -32.32698 -31.94797 -30.14954 -28.54235 -27.59099 -25.62270 -24.53316 -23.65625 -22.32408 -21.24115 -19.69966 -18.75285 -18.34629 -17.37280 -16.95158 -16.73254 -16.57805 -16.09799 -15.59078 -15.32465 -15.09282 -14.89751 -14.65280 -14.06580 -13.98878 -13.68825 -13.41092 -13.28869 -12.96927 -12.68249 -12.66204 -12.52817 -12.45869 -12.04581 -11.86551 -11.66746 -11.56481 -11.43200 -11.08477 -10.64852 -10.43884 -9.29043 -8.86774 -8.71823 -7.89653 -5.47339 -0.42461 0.08331 0.42060 0.91956 1.42182 1.48065 1.51126 1.56841 2.32408 2.48601 2.66963 3.08867 3.25756 3.63639 3.68124 3.94744 3.99854 4.27271 4.42239 4.44688 4.51072 4.55454 4.60324 4.69232 4.77182 4.80519 4.94034 4.97555 5.00075 5.13764 5.19200 5.24231 5.46688 5.51069 5.64395 5.85869 6.32551 6.38502 6.82226 7.07474 7.72833 8.25973 9.07369 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020532 B = 0.004529 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.379609 B = 6180.356714 C = 6692.759577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.138 3.862 3 N -0.572 5.572 4 C -0.269 4.269 5 H 0.071 0.929 6 C -0.029 4.029 7 N -0.911 5.911 8 Si 0.958 3.042 9 H -0.273 1.273 10 H -0.296 1.296 11 H -0.274 1.274 12 C 0.203 3.797 13 C 0.129 3.871 14 N -0.495 5.495 15 C 0.024 3.976 16 C -0.038 4.038 17 C -0.175 4.175 18 C 0.138 3.862 19 O -0.327 6.327 20 C 0.014 3.986 21 C -0.130 4.130 22 C -0.158 4.158 23 S 0.028 5.972 24 H 0.056 0.944 25 H 0.040 0.960 26 H 0.052 0.948 27 H 0.019 0.981 28 H 0.066 0.934 29 H 0.252 0.748 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.123 0.877 37 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.427 0.027 -13.233 15.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.012 3.988 3 N -0.291 5.291 4 C -0.399 4.399 5 H 0.089 0.911 6 C -0.227 4.227 7 N -0.554 5.554 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.223 1.223 11 H -0.199 1.199 12 C 0.072 3.928 13 C -0.160 4.160 14 N -0.209 5.209 15 C -0.096 4.096 16 C -0.059 4.059 17 C -0.195 4.195 18 C 0.089 3.911 19 O -0.240 6.240 20 C -0.080 4.080 21 C -0.155 4.155 22 C -0.278 4.278 23 S 0.284 5.716 24 H 0.075 0.925 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.037 0.963 28 H 0.084 0.916 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.169 0.831 33 H 0.195 0.805 34 H 0.085 0.915 35 H 0.091 0.909 36 H 0.141 0.859 37 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 7.308 0.574 -12.581 14.561 hybrid contribution 0.530 -0.707 0.642 1.092 sum 7.838 -0.133 -11.939 14.283 Atomic orbital electron populations 1.22068 0.97193 1.00410 1.00849 1.20932 0.92420 0.85189 1.00229 1.44378 1.71794 1.12636 1.00287 1.19394 1.36212 0.94827 0.89486 0.91114 1.25857 0.96308 0.97927 1.02654 1.70153 1.36518 1.17132 1.31559 0.85493 0.78185 0.77638 0.80100 1.19849 1.22275 1.19924 1.20249 0.85433 0.98498 0.88571 1.29888 1.01792 0.91311 0.92971 1.66143 1.16685 1.21995 1.16080 1.19701 0.88011 0.98655 1.03191 1.20507 0.94623 0.96305 0.94431 1.21084 0.93436 1.00451 1.04575 1.18676 0.83869 0.93989 0.94597 1.86069 1.19384 1.52757 1.65826 1.23468 1.01019 0.90405 0.93117 1.19455 0.91029 1.02018 1.02958 1.23565 0.99187 1.01619 1.03395 1.84896 1.04257 1.32119 1.50343 0.92479 0.94080 0.92899 0.96293 0.91620 0.93909 0.89196 0.89609 0.83112 0.80545 0.91458 0.90900 0.85928 0.84380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.63 10.24 71.98 0.74 -4.89 16 2 C 0.14 6.55 5.98 86.38 0.52 7.06 16 3 N -0.57 -27.66 2.43 -706.33 -1.72 -29.38 16 4 C -0.27 -14.03 9.49 84.03 0.80 -13.24 16 5 H 0.07 3.59 7.92 -2.91 -0.02 3.57 16 6 C -0.03 -1.55 4.94 84.86 0.42 -1.14 16 7 N -0.91 -52.95 11.33 21.65 0.25 -52.71 16 8 Si 0.96 43.59 29.61 68.60 2.03 45.63 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.30 -13.70 7.11 99.48 0.71 -12.99 16 11 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 12 C 0.20 8.43 6.28 85.63 0.54 8.97 16 13 C 0.13 5.62 7.12 88.66 0.63 6.25 16 14 N -0.50 -21.80 10.56 -178.44 -1.88 -23.69 16 15 C 0.02 0.96 6.95 39.80 0.28 1.24 16 16 C -0.04 -1.18 10.04 22.48 0.23 -0.95 16 17 C -0.17 -4.31 8.95 22.00 0.20 -4.11 16 18 C 0.14 3.85 6.68 22.47 0.15 4.00 16 19 O -0.33 -7.59 10.50 -93.06 -0.98 -8.57 16 20 C 0.01 0.17 9.81 113.37 1.11 1.29 16 21 C -0.13 -4.37 10.01 22.51 0.23 -4.14 16 22 C -0.16 -6.23 6.53 22.93 0.15 -6.08 16 23 S 0.03 1.17 23.37 -56.49 -1.32 -0.15 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 27 H 0.02 0.91 8.10 -2.38 -0.02 0.89 16 28 H 0.07 3.60 5.33 -2.39 -0.01 3.59 16 29 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.09 3.37 8.07 -2.38 -0.02 3.35 16 31 H 0.09 3.25 8.04 -2.39 -0.02 3.23 16 32 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 33 H 0.18 2.73 6.28 -2.91 -0.02 2.71 16 34 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 35 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 36 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 Total: -1.00 -66.97 328.18 3.43 -63.54 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 1.08 Total: 11.07 kcal Atomic # 6 Polarization: -11.71 SS G_CDS: 5.98 Total: -5.73 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -3.36 Total: -105.77 kcal Atomic # 8 Polarization: -7.59 SS G_CDS: -0.98 Total: -8.57 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 1.17 SS G_CDS: -1.32 Total: -0.15 kcal Total: -66.97 3.43 -63.54 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355613832.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.849 kcal (2) G-P(sol) polarization free energy of solvation -66.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds