Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99963 * 2 1 4 4 N 1.46498 * 109.46978 * 125.00769 * 3 2 1 5 5 C 1.46505 * 119.99880 * 265.57447 * 4 3 2 6 6 C 1.50703 * 109.47042 * 270.00107 * 5 4 3 7 7 H 1.08005 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00164 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99991 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99608 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47183 * 89.99917 * 10 8 6 12 12 H 1.48500 * 109.46861 * 209.99651 * 10 8 6 13 13 H 1.48501 * 109.47413 * 329.99712 * 10 8 6 14 14 C 1.34771 * 120.00215 * 85.57279 * 4 3 2 15 15 O 1.21630 * 120.00119 * 174.62457 * 14 4 3 16 16 C 1.47270 * 120.00084 * 354.90510 * 14 4 3 17 17 C 1.35207 * 123.14299 * 173.69790 * 16 14 4 18 18 S 1.70934 * 108.82494 * 180.02562 * 17 16 14 19 19 C 1.70776 * 91.13291 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.72071 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49895 * 8.59104 * 20 19 18 22 22 C 1.52998 * 60.00097 * 252.51358 * 21 20 19 23 23 N 1.28641 * 110.55539 * 359.72796 * 19 18 17 24 24 H 1.07992 * 120.00048 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00173 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00167 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46904 * 5.00769 * 3 2 1 28 28 H 1.08999 * 109.47108 * 245.00790 * 3 2 1 29 29 H 1.09003 * 109.47134 * 29.99847 * 5 4 3 30 30 H 1.08994 * 109.46998 * 150.00382 * 5 4 3 31 31 H 0.97006 * 119.99981 * 179.97438 * 9 8 6 32 32 H 1.07994 * 125.58236 * 0.02562 * 17 16 14 33 33 H 1.08997 * 115.54793 * 154.30833 * 20 19 18 34 34 H 1.08991 * 117.50055 * 0.02562 * 21 20 19 35 35 H 1.09010 * 117.49667 * 145.02303 * 21 20 19 36 36 H 1.09001 * 117.50218 * 252.51164 * 22 21 20 37 37 H 1.08998 * 117.51781 * 107.48334 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.5917 1.9525 2.3960 6 6 2.9647 3.4126 2.3799 7 1 3.4530 3.8357 1.5144 8 6 2.6827 4.2082 3.4701 9 7 3.0088 5.4822 3.4563 10 14 1.8389 3.4761 4.9672 11 1 2.8640 2.9697 5.9150 12 1 1.0210 4.5206 5.6345 13 1 0.9611 2.3562 4.5425 14 6 4.2197 0.7854 1.0088 15 8 5.0267 0.8930 1.9124 16 6 4.5843 0.0632 -0.2219 17 6 5.8306 -0.4017 -0.4644 18 16 5.8438 -1.1749 -1.9888 19 6 4.1861 -0.8326 -2.2147 20 6 3.3861 -1.2263 -3.4296 21 6 4.0539 -2.1569 -4.4441 22 6 3.8430 -0.6800 -4.7838 23 7 3.7138 -0.1972 -1.2008 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 1.5134 1.8544 2.5221 30 1 3.1009 1.4565 3.2222 31 1 2.8100 6.0420 4.2231 32 1 6.6786 -0.3009 0.1966 33 1 2.3142 -1.3420 -3.2694 34 1 5.0716 -2.4846 -4.2325 35 1 3.4213 -2.8853 -4.9514 36 1 3.0718 -0.4368 -5.5146 37 1 4.7220 -0.0356 -4.7959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359384448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = 76.546398 kcal Electronic energy + Delta-G solvation = -20927.048740 eV Core-core repulsion = 17798.705946 eV Total energy + Delta-G solvation = -3128.342794 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.43409 -38.45102 -37.17537 -35.71985 -33.08981 -32.02717 -30.47737 -28.50729 -25.98128 -25.47537 -23.78862 -22.79943 -21.68644 -20.50005 -19.82321 -18.88918 -17.68780 -16.86696 -16.53857 -16.12138 -15.28050 -15.13355 -14.66269 -14.44972 -14.14287 -13.86923 -13.41145 -13.08070 -12.82535 -12.50976 -12.37587 -12.02655 -11.72745 -11.60160 -11.58097 -11.17801 -10.98330 -10.89361 -10.84477 -10.49321 -10.12002 -9.68652 -9.59111 -9.47575 -9.24181 -8.94646 -8.76951 -8.55390 -7.69612 -6.05196 -4.03716 0.55548 1.19156 1.60853 2.16449 2.63098 3.32356 3.38207 3.40243 3.45145 3.68779 3.86049 4.05099 4.42935 4.43175 4.58091 4.75244 4.99918 5.21726 5.24357 5.29443 5.40024 5.43118 5.49057 5.60389 5.66923 5.70943 5.86440 5.98145 6.25726 6.45078 6.74767 6.93507 6.99034 7.06465 7.39353 7.54287 7.63804 8.23571 8.49032 8.88555 8.99485 9.54783 11.08233 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.004545 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.780735 B = 6159.663161 C = 6767.042829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.129 4.129 3 C 0.141 3.859 4 N -0.569 5.569 5 C 0.217 3.783 6 C -0.527 4.527 7 H 0.075 0.925 8 C 0.073 3.927 9 N -0.898 5.898 10 Si 0.875 3.125 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.265 1.265 14 C 0.579 3.421 15 O -0.531 6.531 16 C 0.026 3.974 17 C -0.229 4.229 18 S 0.184 5.816 19 C 0.049 3.951 20 C -0.080 4.080 21 C -0.171 4.171 22 C -0.160 4.160 23 N -0.426 5.426 24 H 0.095 0.905 25 H 0.089 0.911 26 H 0.103 0.897 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.034 0.966 30 H 0.036 0.964 31 H 0.264 0.736 32 H 0.188 0.812 33 H 0.134 0.866 34 H 0.098 0.902 35 H 0.108 0.892 36 H 0.107 0.893 37 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.691 -16.789 -17.249 24.080 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.148 4.148 3 C 0.018 3.982 4 N -0.298 5.298 5 C 0.097 3.903 6 C -0.565 4.565 7 H 0.093 0.907 8 C -0.129 4.129 9 N -0.536 5.536 10 Si 0.701 3.299 11 H -0.199 1.199 12 H -0.210 1.210 13 H -0.190 1.190 14 C 0.362 3.638 15 O -0.409 6.409 16 C -0.108 4.108 17 C -0.371 4.371 18 S 0.441 5.559 19 C -0.230 4.230 20 C -0.102 4.102 21 C -0.209 4.209 22 C -0.199 4.199 23 N -0.141 5.141 24 H 0.113 0.887 25 H 0.108 0.892 26 H 0.121 0.879 27 H 0.098 0.902 28 H 0.115 0.885 29 H 0.052 0.948 30 H 0.054 0.946 31 H 0.074 0.926 32 H 0.205 0.795 33 H 0.152 0.848 34 H 0.116 0.884 35 H 0.127 0.873 36 H 0.125 0.875 37 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 1.289 -16.863 -17.152 24.088 hybrid contribution -0.695 0.298 1.721 1.879 sum 0.595 -16.564 -15.431 22.646 Atomic orbital electron populations 1.23731 0.95888 1.01269 1.03772 1.23292 0.95411 0.99253 0.96832 1.20802 0.92557 0.94687 0.90187 1.47746 1.12594 1.54566 1.14900 1.19735 0.95389 0.94172 0.81030 1.21312 1.39743 0.91600 1.03864 0.90690 1.24835 0.95294 0.94688 0.98091 1.69897 1.47447 1.05342 1.30925 0.86871 0.80153 0.79209 0.83636 1.19893 1.21022 1.18962 1.17060 0.82770 0.79325 0.84598 1.90796 1.49090 1.60525 1.40441 1.20795 0.89482 1.03878 0.96687 1.26572 1.02996 1.05073 1.02448 1.82550 1.10193 1.51460 1.11725 1.26334 0.95635 1.02075 0.98931 1.20367 0.99150 1.05423 0.85272 1.23140 1.02092 0.93826 1.01846 1.23144 1.03867 0.96383 0.96490 1.67363 1.33940 1.12645 1.00173 0.88661 0.89220 0.87903 0.90186 0.88478 0.94846 0.94641 0.92582 0.79454 0.84803 0.88398 0.87330 0.87451 0.88197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.95 14.32 29.01 0.42 -2.53 16 2 C -0.13 -2.06 8.63 -36.02 -0.31 -2.37 16 3 C 0.14 2.62 5.43 -5.19 -0.03 2.59 16 4 N -0.57 -12.84 2.45 -177.76 -0.44 -13.28 16 5 C 0.22 5.57 4.17 -5.19 -0.02 5.55 16 6 C -0.53 -15.62 9.94 -34.44 -0.34 -15.96 16 7 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 8 C 0.07 2.18 5.47 -17.82 -0.10 2.08 16 9 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 10 Si 0.87 22.03 27.47 -169.99 -4.67 17.36 16 11 H -0.27 -6.90 7.11 56.52 0.40 -6.49 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 13 H -0.26 -6.32 6.54 56.52 0.37 -5.95 16 14 C 0.58 13.00 7.60 -12.59 -0.10 12.90 16 15 O -0.53 -13.71 16.36 5.25 0.09 -13.63 16 16 C 0.03 0.46 6.41 -84.52 -0.54 -0.08 16 17 C -0.23 -3.37 10.62 29.65 0.31 -3.05 16 18 S 0.18 1.91 21.65 -107.50 -2.33 -0.41 16 19 C 0.05 0.58 6.99 -13.62 -0.10 0.49 16 20 C -0.08 -0.70 6.33 -91.77 -0.58 -1.28 16 21 C -0.17 -1.04 10.01 -26.73 -0.27 -1.31 16 22 C -0.16 -1.09 10.23 -26.73 -0.27 -1.36 16 23 N -0.43 -6.50 5.18 -8.51 -0.04 -6.54 16 24 H 0.10 1.32 7.84 -52.49 -0.41 0.91 16 25 H 0.09 1.10 8.06 -52.49 -0.42 0.67 16 26 H 0.10 1.67 7.15 -52.49 -0.38 1.29 16 27 H 0.08 1.52 7.69 -51.93 -0.40 1.12 16 28 H 0.10 1.75 5.75 -51.93 -0.30 1.45 16 29 H 0.03 0.82 7.13 -51.93 -0.37 0.45 16 30 H 0.04 0.96 6.93 -51.93 -0.36 0.60 16 31 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 32 H 0.19 2.63 8.04 -52.49 -0.42 2.21 16 33 H 0.13 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.10 0.57 7.21 -51.93 -0.37 0.19 16 35 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.11 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 328.69 15.07 4.95 4.95 Total: -1.00 -34.47 328.69 -8.30 -42.78 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -4.71 Total: 0.51 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: -1.92 Total: -4.33 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: 0.29 Total: -47.22 kcal Atomic # 8 Polarization: -13.71 SS G_CDS: 0.09 Total: -13.63 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.67 Total: 17.36 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.33 Total: -0.41 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -34.47 -8.30 -42.78 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.322 kcal (2) G-P(sol) polarization free energy of solvation -34.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.776 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds