Wall clock time and date at job start Tue Mar 31 2020 06:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50702 * 119.99963 * 2 1 4 4 N 1.46498 * 109.46978 * 125.00769 * 3 2 1 5 5 C 1.46505 * 119.99880 * 265.57447 * 4 3 2 6 6 C 1.50703 * 109.47042 * 270.00107 * 5 4 3 7 7 H 1.08005 * 119.99814 * 359.97438 * 6 5 4 8 8 C 1.37879 * 120.00164 * 179.97438 * 6 5 4 9 9 N 1.31510 * 119.99991 * 179.97438 * 8 6 5 10 10 Si 1.86796 * 119.99608 * 0.02562 * 8 6 5 11 11 H 1.48506 * 109.47183 * 89.99917 * 10 8 6 12 12 H 1.48500 * 109.46861 * 209.99651 * 10 8 6 13 13 H 1.48501 * 109.47413 * 329.99712 * 10 8 6 14 14 C 1.34771 * 120.00215 * 85.57279 * 4 3 2 15 15 O 1.21630 * 120.00119 * 174.62457 * 14 4 3 16 16 C 1.47270 * 120.00084 * 354.90510 * 14 4 3 17 17 C 1.35207 * 123.14299 * 173.69790 * 16 14 4 18 18 S 1.70934 * 108.82494 * 180.02562 * 17 16 14 19 19 C 1.70776 * 91.13291 * 0.02562 * 18 17 16 20 20 C 1.50697 * 124.72071 * 180.02562 * 19 18 17 21 21 C 1.53001 * 117.49895 * 8.59104 * 20 19 18 22 22 C 1.52998 * 60.00097 * 252.51358 * 21 20 19 23 23 N 1.28641 * 110.55539 * 359.72796 * 19 18 17 24 24 H 1.07992 * 120.00048 * 359.97438 * 1 2 3 25 25 H 1.08002 * 120.00173 * 180.02562 * 1 2 3 26 26 H 1.08001 * 120.00167 * 180.02562 * 2 1 3 27 27 H 1.09006 * 109.46904 * 5.00769 * 3 2 1 28 28 H 1.08999 * 109.47108 * 245.00790 * 3 2 1 29 29 H 1.09003 * 109.47134 * 29.99847 * 5 4 3 30 30 H 1.08994 * 109.46998 * 150.00382 * 5 4 3 31 31 H 0.97006 * 119.99981 * 179.97438 * 9 8 6 32 32 H 1.07994 * 125.58236 * 0.02562 * 17 16 14 33 33 H 1.08997 * 115.54793 * 154.30833 * 20 19 18 34 34 H 1.08991 * 117.50055 * 0.02562 * 21 20 19 35 35 H 1.09010 * 117.49667 * 145.02303 * 21 20 19 36 36 H 1.09001 * 117.50218 * 252.51164 * 22 21 20 37 37 H 1.08998 * 117.51781 * 107.48334 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9939 1.3318 1.1313 5 6 2.5917 1.9525 2.3960 6 6 2.9647 3.4126 2.3799 7 1 3.4530 3.8357 1.5144 8 6 2.6827 4.2082 3.4701 9 7 3.0088 5.4822 3.4563 10 14 1.8389 3.4761 4.9672 11 1 2.8640 2.9697 5.9150 12 1 1.0210 4.5206 5.6345 13 1 0.9611 2.3562 4.5425 14 6 4.2197 0.7854 1.0088 15 8 5.0267 0.8930 1.9124 16 6 4.5843 0.0632 -0.2219 17 6 5.8306 -0.4017 -0.4644 18 16 5.8438 -1.1749 -1.9888 19 6 4.1861 -0.8326 -2.2147 20 6 3.3861 -1.2263 -3.4296 21 6 4.0539 -2.1569 -4.4441 22 6 3.8430 -0.6800 -4.7838 23 7 3.7138 -0.1972 -1.2008 24 1 -0.5400 0.9352 0.0004 25 1 -0.5400 -0.9353 0.0004 26 1 1.8500 -0.9353 -0.0004 27 1 1.3585 2.1317 0.0897 28 1 2.6212 1.4027 -0.9314 29 1 1.5134 1.8544 2.5221 30 1 3.1009 1.4565 3.2222 31 1 2.8100 6.0420 4.2231 32 1 6.6786 -0.3009 0.1966 33 1 2.3142 -1.3420 -3.2694 34 1 5.0716 -2.4846 -4.2325 35 1 3.4213 -2.8853 -4.9514 36 1 3.0718 -0.4368 -5.5146 37 1 4.7220 -0.0356 -4.7959 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359384448.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:48:03 Heat of formation + Delta-G solvation = 54.649579 kcal Electronic energy + Delta-G solvation = -20927.998257 eV Core-core repulsion = 17798.705946 eV Total energy + Delta-G solvation = -3129.292312 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.74532 -39.83409 -37.92888 -37.38079 -35.06721 -33.77997 -31.65717 -30.43000 -27.19867 -26.96333 -25.29575 -23.32366 -23.21012 -21.51541 -21.12734 -20.15475 -19.19013 -18.99633 -17.78966 -17.23974 -16.81995 -16.55198 -16.07150 -15.71222 -15.55912 -15.01594 -14.88622 -14.57464 -14.41980 -14.19696 -13.61664 -13.27636 -13.13682 -13.06328 -12.80473 -12.53366 -12.35895 -12.24975 -11.96033 -11.83514 -11.77294 -11.45317 -11.11116 -10.86111 -10.58933 -10.56366 -10.16632 -9.83960 -9.46726 -8.36864 -6.42827 -0.53264 0.22267 0.55903 0.92126 1.30263 1.34613 1.39659 1.44466 2.21851 2.28840 2.37628 2.79346 2.96781 3.03461 3.62406 3.85600 4.02399 4.07628 4.16212 4.16472 4.25505 4.44125 4.56794 4.63951 4.70305 4.80359 4.86938 4.97154 5.05897 5.13110 5.16010 5.25087 5.40059 5.48269 5.77801 5.98357 6.17959 6.40704 6.57032 6.58183 7.11756 7.25569 8.80381 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.023101 B = 0.004545 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.780735 B = 6159.663161 C = 6767.042829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.143 4.143 3 C 0.144 3.856 4 N -0.579 5.579 5 C 0.228 3.772 6 C -0.538 4.538 7 H 0.025 0.975 8 C 0.014 3.986 9 N -0.943 5.943 10 Si 0.949 3.051 11 H -0.273 1.273 12 H -0.270 1.270 13 H -0.240 1.240 14 C 0.569 3.431 15 O -0.583 6.583 16 C -0.004 4.004 17 C -0.247 4.247 18 S 0.291 5.709 19 C 0.044 3.956 20 C -0.105 4.105 21 C -0.150 4.150 22 C -0.156 4.156 23 N -0.448 5.448 24 H 0.098 0.902 25 H 0.117 0.883 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.100 0.900 29 H 0.050 0.950 30 H 0.021 0.979 31 H 0.270 0.730 32 H 0.185 0.815 33 H 0.135 0.865 34 H 0.104 0.896 35 H 0.131 0.869 36 H 0.123 0.877 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -19.692 -19.053 27.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.162 4.162 3 C 0.022 3.978 4 N -0.307 5.307 5 C 0.106 3.894 6 C -0.577 4.577 7 H 0.043 0.957 8 C -0.184 4.184 9 N -0.583 5.583 10 Si 0.771 3.229 11 H -0.198 1.198 12 H -0.195 1.195 13 H -0.163 1.163 14 C 0.356 3.644 15 O -0.464 6.464 16 C -0.139 4.139 17 C -0.390 4.390 18 S 0.550 5.450 19 C -0.235 4.235 20 C -0.127 4.127 21 C -0.188 4.188 22 C -0.195 4.195 23 N -0.164 5.164 24 H 0.116 0.884 25 H 0.135 0.865 26 H 0.120 0.880 27 H 0.087 0.913 28 H 0.118 0.882 29 H 0.068 0.932 30 H 0.039 0.961 31 H 0.079 0.921 32 H 0.203 0.797 33 H 0.153 0.847 34 H 0.122 0.878 35 H 0.149 0.851 36 H 0.141 0.859 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.064 -19.791 -19.024 27.452 hybrid contribution -0.229 1.192 2.061 2.392 sum -0.165 -18.599 -16.962 25.173 Atomic orbital electron populations 1.23965 0.95089 1.02689 1.00431 1.22985 0.95843 0.97583 0.99812 1.20897 0.91893 0.96057 0.88921 1.47844 1.13711 1.54265 1.14870 1.19395 0.95852 0.91536 0.82604 1.21473 1.39662 0.93950 1.02591 0.95675 1.25838 0.95919 0.94958 1.01675 1.70046 1.48830 1.07063 1.32372 0.85706 0.79292 0.79293 0.78650 1.19845 1.19499 1.16336 1.17765 0.81969 0.78883 0.85816 1.90732 1.50348 1.62631 1.42706 1.20172 0.91179 1.06203 0.96302 1.26839 1.02031 1.04959 1.05157 1.82107 1.07664 1.48125 1.07099 1.26977 0.97283 1.00406 0.98800 1.20522 0.99180 1.08251 0.84752 1.23297 1.02375 0.93748 0.99370 1.23271 1.04057 0.97121 0.95042 1.67272 1.34124 1.14367 1.00649 0.88382 0.86478 0.87969 0.91346 0.88235 0.93163 0.96089 0.92088 0.79737 0.84682 0.87803 0.85129 0.85926 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.77 14.32 67.78 0.97 -3.80 16 2 C -0.14 -4.47 8.63 25.65 0.22 -4.25 16 3 C 0.14 5.52 5.43 85.63 0.46 5.98 16 4 N -0.58 -27.34 2.45 -834.54 -2.04 -29.39 16 5 C 0.23 12.09 4.17 85.63 0.36 12.45 16 6 C -0.54 -33.58 9.94 25.60 0.25 -33.33 16 7 H 0.02 1.76 8.06 -2.91 -0.02 1.73 16 8 C 0.01 0.88 5.47 84.66 0.46 1.34 16 9 N -0.94 -61.33 13.96 21.45 0.30 -61.03 16 10 Si 0.95 45.94 27.47 68.60 1.88 47.83 16 11 H -0.27 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 13 H -0.24 -10.59 6.54 99.48 0.65 -9.94 16 14 C 0.57 27.05 7.60 86.62 0.66 27.71 16 15 O -0.58 -32.13 16.36 -4.13 -0.07 -32.19 16 16 C 0.00 -0.15 6.41 40.56 0.26 0.11 16 17 C -0.25 -7.29 10.62 67.12 0.71 -6.58 16 18 S 0.29 5.36 21.65 -56.49 -1.22 4.14 16 19 C 0.04 0.96 6.99 88.57 0.62 1.58 16 20 C -0.11 -1.55 6.33 -11.54 -0.07 -1.62 16 21 C -0.15 -1.21 10.01 30.59 0.31 -0.90 16 22 C -0.16 -1.61 10.23 30.59 0.31 -1.29 16 23 N -0.45 -13.62 5.18 -180.83 -0.94 -14.56 16 24 H 0.10 2.50 7.84 -2.91 -0.02 2.48 16 25 H 0.12 2.43 8.06 -2.91 -0.02 2.41 16 26 H 0.10 3.24 7.15 -2.91 -0.02 3.22 16 27 H 0.07 2.69 7.69 -2.38 -0.02 2.67 16 28 H 0.10 3.72 5.75 -2.39 -0.01 3.71 16 29 H 0.05 2.47 7.13 -2.39 -0.02 2.45 16 30 H 0.02 1.17 6.93 -2.39 -0.02 1.15 16 31 H 0.27 16.20 8.31 -92.70 -0.77 15.43 16 32 H 0.19 5.38 8.04 -2.91 -0.02 5.36 16 33 H 0.14 1.98 8.14 -2.39 -0.02 1.96 16 34 H 0.10 0.72 7.21 -2.39 -0.02 0.70 16 35 H 0.13 0.55 8.14 -2.38 -0.02 0.53 16 36 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 Total: -1.00 -80.57 328.69 4.46 -76.11 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: 1.02 Total: 11.69 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: 5.53 Total: -2.60 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -2.68 Total: -104.97 kcal Atomic # 8 Polarization: -32.13 SS G_CDS: -0.07 Total: -32.19 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.88 Total: 47.83 kcal Atomic # 16 Polarization: 5.36 SS G_CDS: -1.22 Total: 4.14 kcal Total: -80.57 4.46 -76.11 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359384448.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.756 kcal (2) G-P(sol) polarization free energy of solvation -80.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds