Wall clock time and date at job start Tue Mar 31 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47112 * 240.00103 * 3 2 1 5 5 H 1.48497 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47280 * 120.00116 * 3 2 1 7 7 C 1.38803 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99657 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99979 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47318 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99493 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00052 * 180.02562 * 11 10 9 14 14 C 1.39948 * 119.99749 * 184.67800 * 13 11 10 15 15 C 1.38911 * 120.64908 * 145.05471 * 14 13 11 16 16 N 1.31435 * 120.50013 * 180.02562 * 15 14 13 17 17 C 1.32725 * 122.50944 * 0.06921 * 16 15 14 18 18 C 1.37671 * 120.21497 * 359.76476 * 17 16 15 19 19 C 1.39009 * 120.65613 * 325.03032 * 14 13 11 20 20 C 1.50507 * 122.84126 * 180.45371 * 18 17 16 21 21 C 1.52757 * 110.56942 * 342.47956 * 20 18 17 22 22 C 1.53326 * 108.34725 * 50.84642 * 21 20 18 23 23 C 1.50749 * 117.47958 * 179.59663 * 17 16 15 24 24 H 0.96993 * 119.99942 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46839 * 59.99516 * 10 9 7 26 26 H 1.08997 * 109.47110 * 300.00349 * 10 9 7 27 27 H 0.97000 * 119.99435 * 4.67505 * 13 11 10 28 28 H 1.07999 * 119.74750 * 359.79977 * 15 14 13 29 29 H 1.07995 * 120.58612 * 359.95057 * 19 14 13 30 30 H 1.08997 * 109.25905 * 102.76632 * 20 18 17 31 31 H 1.09001 * 109.25071 * 222.20012 * 20 18 17 32 32 H 1.08999 * 109.69088 * 170.56368 * 21 20 18 33 33 H 1.09002 * 109.68808 * 291.13524 * 21 20 18 34 34 H 1.08999 * 109.63894 * 49.79952 * 22 21 20 35 35 H 1.09003 * 109.64147 * 170.42822 * 22 21 20 36 36 H 1.08998 * 109.25551 * 41.99143 * 23 17 16 37 37 H 1.08999 * 109.22564 * 282.53657 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3028 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0018 14 6 2.3566 -7.6512 -0.0965 15 6 3.0692 -8.6225 -0.7882 16 7 2.6082 -9.8500 -0.8791 17 6 1.4598 -10.2233 -0.3282 18 6 0.7014 -9.3151 0.3756 19 6 1.1500 -8.0042 0.4966 20 6 -0.6038 -9.6764 1.0321 21 6 -1.1489 -10.9835 0.4594 22 6 -0.0346 -12.0354 0.5122 23 6 1.0346 -11.6580 -0.5108 24 1 -0.4850 0.8400 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1246 -3.7313 -0.8894 27 1 3.7989 -6.1851 0.0703 28 1 4.0072 -8.3662 -1.2579 29 1 0.5717 -7.2738 1.0427 30 1 -0.4470 -9.7916 2.1046 31 1 -1.3263 -8.8789 0.8586 32 1 -1.9989 -11.3187 1.0538 33 1 -1.4604 -10.8300 -0.5738 34 1 0.4036 -12.0551 1.5100 35 1 -0.4445 -13.0158 0.2692 36 1 1.8999 -12.3084 -0.3829 37 1 0.6326 -11.7881 -1.5156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360196206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:41 Heat of formation + Delta-G solvation = -18.775229 kcal Electronic energy + Delta-G solvation = -19949.366784 eV Core-core repulsion = 16816.890534 eV Total energy + Delta-G solvation = -3132.476250 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.99151 -39.34075 -36.77392 -34.72543 -32.87907 -32.49293 -30.45354 -29.97045 -28.17437 -25.55668 -24.59319 -23.21520 -22.69249 -20.81532 -19.81625 -18.20679 -17.26002 -16.77614 -16.35011 -16.14878 -15.08107 -15.02116 -14.85906 -14.31948 -14.12626 -14.08275 -13.69510 -13.50615 -12.97704 -12.94128 -12.68448 -12.61068 -12.30730 -11.94468 -11.16894 -11.11576 -11.08261 -11.06862 -10.86502 -10.82533 -10.56147 -9.92945 -9.88173 -9.40639 -9.13012 -9.11478 -8.35049 -8.17462 -6.59149 -6.27979 -3.99959 1.00748 1.27172 2.77883 2.85241 3.19773 3.22431 3.25667 3.52000 3.72236 4.13675 4.16852 4.48802 4.64758 4.67795 4.79836 4.85344 4.97183 5.06968 5.07475 5.30768 5.33815 5.37249 5.48016 5.53349 5.58625 5.67853 5.73427 5.80425 5.81988 5.89023 6.00572 6.07271 6.11277 6.22420 6.39328 6.80889 7.37340 7.53307 7.93099 8.28343 8.30081 9.17345 10.79408 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039381 B = 0.002905 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.825796 B = 9635.328087 C =10220.088178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.920 3.080 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.538 4.538 8 H 0.073 0.927 9 S -0.056 6.056 10 C -0.154 4.154 11 C 0.532 3.468 12 O -0.497 6.497 13 N -0.675 5.675 14 C 0.103 3.897 15 C 0.077 3.923 16 N -0.472 5.472 17 C 0.105 3.895 18 C -0.105 4.105 19 C -0.083 4.083 20 C -0.078 4.078 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.063 4.063 24 H 0.270 0.730 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.412 0.588 28 H 0.156 0.844 29 H 0.152 0.848 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.081 0.919 37 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.994 -21.384 1.466 21.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.746 3.254 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.686 4.686 8 H 0.092 0.908 9 S 0.170 5.830 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.369 6.369 13 N -0.323 5.323 14 C 0.006 3.994 15 C -0.086 4.086 16 N -0.180 5.180 17 C -0.031 4.031 18 C -0.108 4.108 19 C -0.111 4.111 20 C -0.116 4.116 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.101 4.101 24 H 0.080 0.920 25 H 0.113 0.887 26 H 0.113 0.887 27 H 0.248 0.752 28 H 0.173 0.827 29 H 0.169 0.831 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.090 0.910 36 H 0.099 0.901 37 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 2.308 -22.139 0.997 22.281 hybrid contribution 2.114 2.248 0.405 3.112 sum 4.422 -19.891 1.401 20.425 Atomic orbital electron populations 1.69997 1.05975 1.27709 1.46549 1.24999 0.95048 0.99086 0.94394 0.86203 0.79235 0.81110 0.78847 1.19884 1.20766 1.19893 1.22812 0.94900 0.91488 1.59401 0.90848 1.85415 1.04424 0.96368 1.96776 1.23546 1.07041 0.94399 1.05429 1.20599 0.86490 0.86321 0.74617 1.90698 1.15296 1.85166 1.45787 1.43577 1.11085 1.03336 1.74259 1.18811 0.96548 0.85696 0.98357 1.22456 1.00658 0.88319 0.97153 1.67446 1.13621 1.18109 1.18797 1.20918 0.90387 0.96245 0.95546 1.20386 0.97818 0.93068 0.99491 1.21828 0.95937 0.95838 0.97521 1.20435 0.93222 0.98367 0.99584 1.21575 0.97877 0.94577 1.01792 1.21576 0.95905 0.98788 0.99440 1.20278 0.99050 0.90637 1.00090 0.92032 0.88714 0.88666 0.75191 0.82665 0.83054 0.90353 0.90068 0.91124 0.91418 0.91505 0.91016 0.90072 0.90200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.72 13.22 55.49 0.73 -24.99 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.03 29.55 -169.99 -5.02 16.00 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 8 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 9 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 10 C -0.15 -2.92 6.16 36.01 0.22 -2.70 16 11 C 0.53 9.47 7.71 -10.99 -0.08 9.39 16 12 O -0.50 -10.63 13.35 5.55 0.07 -10.56 16 13 N -0.68 -9.03 5.35 -9.82 -0.05 -9.08 16 14 C 0.10 1.44 6.32 -83.62 -0.53 0.91 16 15 C 0.08 0.96 11.14 -17.47 -0.19 0.77 16 16 N -0.47 -6.31 10.17 -9.33 -0.09 -6.41 16 17 C 0.10 1.31 6.62 -82.39 -0.55 0.76 16 18 C -0.11 -1.34 5.74 -104.61 -0.60 -1.94 16 19 C -0.08 -1.22 8.40 -38.99 -0.33 -1.55 16 20 C -0.08 -0.80 5.68 -28.10 -0.16 -0.96 16 21 C -0.12 -0.98 5.98 -26.69 -0.16 -1.14 16 22 C -0.12 -0.89 5.97 -26.71 -0.16 -1.05 16 23 C -0.06 -0.58 5.91 -28.01 -0.17 -0.75 16 24 H 0.27 7.46 8.31 -40.82 -0.34 7.12 16 25 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 26 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 27 H 0.41 3.96 8.83 -40.82 -0.36 3.60 16 28 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 29 H 0.15 2.47 6.32 -52.49 -0.33 2.14 16 30 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.08 0.87 8.13 -51.93 -0.42 0.44 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 34 H 0.07 0.50 8.10 -51.93 -0.42 0.07 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 LS Contribution 324.80 15.07 4.89 4.89 Total: -1.00 -33.59 324.80 -9.07 -42.65 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.88 Total: 2.09 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -2.51 Total: -10.92 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.59 Total: -40.47 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -33.59 -9.07 -42.65 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360196206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.878 kcal (2) G-P(sol) polarization free energy of solvation -33.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds