Wall clock time and date at job start Tue Mar 31 2020 06:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86801 * 119.99952 * 2 1 4 4 H 1.48497 * 109.47112 * 240.00103 * 3 2 1 5 5 H 1.48497 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47280 * 120.00116 * 3 2 1 7 7 C 1.38803 * 120.00061 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99657 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99926 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99979 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47318 * 179.97438 * 10 9 7 12 12 O 1.21287 * 119.99493 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00052 * 180.02562 * 11 10 9 14 14 C 1.39948 * 119.99749 * 184.67800 * 13 11 10 15 15 C 1.38911 * 120.64908 * 145.05471 * 14 13 11 16 16 N 1.31435 * 120.50013 * 180.02562 * 15 14 13 17 17 C 1.32725 * 122.50944 * 0.06921 * 16 15 14 18 18 C 1.37671 * 120.21497 * 359.76476 * 17 16 15 19 19 C 1.39009 * 120.65613 * 325.03032 * 14 13 11 20 20 C 1.50507 * 122.84126 * 180.45371 * 18 17 16 21 21 C 1.52757 * 110.56942 * 342.47956 * 20 18 17 22 22 C 1.53326 * 108.34725 * 50.84642 * 21 20 18 23 23 C 1.50749 * 117.47958 * 179.59663 * 17 16 15 24 24 H 0.96993 * 119.99942 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46839 * 59.99516 * 10 9 7 26 26 H 1.08997 * 109.47110 * 300.00349 * 10 9 7 27 27 H 0.97000 * 119.99435 * 4.67505 * 13 11 10 28 28 H 1.07999 * 119.74750 * 359.79977 * 15 14 13 29 29 H 1.07995 * 120.58612 * 359.95057 * 19 14 13 30 30 H 1.08997 * 109.25905 * 102.76632 * 20 18 17 31 31 H 1.09001 * 109.25071 * 222.20012 * 20 18 17 32 32 H 1.08999 * 109.69088 * 170.56368 * 21 20 18 33 33 H 1.09002 * 109.68808 * 291.13524 * 21 20 18 34 34 H 1.08999 * 109.63894 * 49.79952 * 22 21 20 35 35 H 1.09003 * 109.64147 * 170.42822 * 22 21 20 36 36 H 1.08998 * 109.25551 * 41.99143 * 23 17 16 37 37 H 1.08999 * 109.22564 * 282.53657 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3028 0.0012 12 8 0.7912 -5.5023 0.0011 13 7 2.8443 -6.3431 0.0018 14 6 2.3566 -7.6512 -0.0965 15 6 3.0692 -8.6225 -0.7882 16 7 2.6082 -9.8500 -0.8791 17 6 1.4598 -10.2233 -0.3282 18 6 0.7014 -9.3151 0.3756 19 6 1.1500 -8.0042 0.4966 20 6 -0.6038 -9.6764 1.0321 21 6 -1.1489 -10.9835 0.4594 22 6 -0.0346 -12.0354 0.5122 23 6 1.0346 -11.6580 -0.5108 24 1 -0.4850 0.8400 -0.0004 25 1 3.1246 -3.7313 0.8905 26 1 3.1246 -3.7313 -0.8894 27 1 3.7989 -6.1851 0.0703 28 1 4.0072 -8.3662 -1.2579 29 1 0.5717 -7.2738 1.0427 30 1 -0.4470 -9.7916 2.1046 31 1 -1.3263 -8.8789 0.8586 32 1 -1.9989 -11.3187 1.0538 33 1 -1.4604 -10.8300 -0.5738 34 1 0.4036 -12.0551 1.5100 35 1 -0.4445 -13.0158 0.2692 36 1 1.8999 -12.3084 -0.3829 37 1 0.6326 -11.7881 -1.5156 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360196206.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:41 Heat of formation + Delta-G solvation = -40.480291 kcal Electronic energy + Delta-G solvation = -19950.307986 eV Core-core repulsion = 16816.890534 eV Total energy + Delta-G solvation = -3133.417452 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -42.06524 -40.58935 -37.68123 -35.90956 -34.60041 -33.86241 -31.67433 -30.90814 -29.35226 -27.67114 -25.52387 -24.16691 -23.60577 -22.03500 -20.72730 -19.97405 -18.62758 -18.03868 -17.34260 -17.26902 -16.89140 -16.37398 -16.16610 -15.80153 -15.13272 -15.01399 -14.83577 -14.60380 -14.51782 -14.04701 -13.77956 -13.70094 -13.42254 -13.18882 -12.88516 -12.82788 -12.66292 -11.98700 -11.82693 -11.74389 -11.66873 -11.47338 -11.21894 -11.14152 -10.47921 -10.32223 -10.21022 -9.23804 -8.69386 -8.36420 -6.14907 -0.02676 0.20419 1.19810 1.41740 1.43487 1.45826 1.54015 2.04876 2.25302 2.71055 2.98191 3.22590 3.32927 3.61769 3.75148 3.85709 3.90851 3.96000 4.03228 4.23759 4.25348 4.44618 4.49139 4.51347 4.62310 4.66519 4.81668 4.96570 5.01292 5.08007 5.09186 5.24187 5.29551 5.40669 5.42874 5.45098 5.75960 6.18064 6.24864 6.91929 7.01049 7.05232 8.72476 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.039381 B = 0.002905 C = 0.002739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.825796 B = 9635.328087 C =10220.088178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.085 0.915 9 S -0.147 6.147 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.541 6.541 13 N -0.650 5.650 14 C 0.085 3.915 15 C 0.084 3.916 16 N -0.485 5.485 17 C 0.102 3.898 18 C -0.113 4.113 19 C -0.103 4.103 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.113 4.113 23 C -0.063 4.063 24 H 0.271 0.729 25 H 0.118 0.882 26 H 0.117 0.883 27 H 0.432 0.568 28 H 0.187 0.813 29 H 0.127 0.873 30 H 0.088 0.912 31 H 0.067 0.933 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.054 -22.721 1.304 23.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.695 4.695 8 H 0.103 0.897 9 S 0.080 5.920 10 C -0.279 4.279 11 C 0.323 3.677 12 O -0.417 6.417 13 N -0.298 5.298 14 C -0.012 4.012 15 C -0.078 4.078 16 N -0.193 5.193 17 C -0.034 4.034 18 C -0.115 4.115 19 C -0.131 4.131 20 C -0.118 4.118 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.101 4.101 24 H 0.080 0.920 25 H 0.136 0.864 26 H 0.135 0.865 27 H 0.272 0.728 28 H 0.204 0.796 29 H 0.145 0.855 30 H 0.106 0.894 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.108 0.892 37 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 4.418 -23.517 0.838 23.943 hybrid contribution 1.501 2.499 0.456 2.951 sum 5.919 -21.018 1.294 21.874 Atomic orbital electron populations 1.70168 1.07979 1.28724 1.47909 1.26126 0.95953 1.03339 0.93709 0.85007 0.77801 0.75699 0.79529 1.18645 1.20523 1.18608 1.23177 0.95444 0.91852 1.59009 0.89654 1.85599 1.10089 0.99194 1.97101 1.23357 1.03958 0.93018 1.07573 1.20359 0.86199 0.86689 0.74478 1.90699 1.17205 1.85638 1.48127 1.43165 1.11557 1.02353 1.72758 1.18933 0.96885 0.85836 0.99547 1.22891 1.01246 0.87594 0.96084 1.67569 1.14151 1.18352 1.19242 1.21490 0.89863 0.97682 0.94317 1.20659 0.98859 0.92404 0.99619 1.21833 0.96503 0.96470 0.98319 1.20505 0.91841 0.99285 1.00146 1.21587 0.98766 0.93532 1.01630 1.21579 0.94971 0.99552 0.98999 1.20412 1.00028 0.88581 1.01061 0.91973 0.86372 0.86454 0.72792 0.79595 0.85466 0.89388 0.91402 0.89207 0.91957 0.91292 0.88560 0.89179 0.89567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.34 13.22 21.65 0.29 -55.05 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 42.85 29.55 68.60 2.03 44.88 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 6 H -0.26 -10.63 7.11 99.48 0.71 -9.92 16 7 C -0.55 -30.48 9.50 67.96 0.65 -29.83 16 8 H 0.09 4.37 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -7.92 20.57 -56.49 -1.16 -9.08 16 10 C -0.13 -4.78 6.16 71.24 0.44 -4.34 16 11 C 0.54 19.03 7.71 87.66 0.68 19.71 16 12 O -0.54 -24.05 13.35 -3.05 -0.04 -24.09 16 13 N -0.65 -16.62 5.35 -303.35 -1.62 -18.24 16 14 C 0.08 2.31 6.32 38.19 0.24 2.55 16 15 C 0.08 1.96 11.14 84.91 0.95 2.91 16 16 N -0.48 -12.17 10.17 -183.44 -1.87 -14.04 16 17 C 0.10 2.41 6.62 42.31 0.28 2.69 16 18 C -0.11 -2.88 5.74 -19.86 -0.11 -2.99 16 19 C -0.10 -3.12 8.40 22.66 0.19 -2.93 16 20 C -0.08 -1.62 5.68 29.71 0.17 -1.45 16 21 C -0.12 -1.71 5.98 30.62 0.18 -1.53 16 22 C -0.11 -1.39 5.97 30.61 0.18 -1.21 16 23 C -0.06 -1.03 5.91 29.77 0.18 -0.86 16 24 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 25 H 0.12 3.87 8.14 -2.39 -0.02 3.85 16 26 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 27 H 0.43 7.25 8.83 -92.71 -0.82 6.44 16 28 H 0.19 3.01 8.06 -2.91 -0.02 2.99 16 29 H 0.13 4.45 6.32 -2.91 -0.02 4.43 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.53 8.13 -2.39 -0.02 1.51 16 32 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 0.98 8.10 -2.39 -0.02 0.96 16 34 H 0.07 0.84 8.10 -2.39 -0.02 0.82 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 Total: -1.00 -75.34 324.80 2.37 -72.96 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: 0.27 Total: 18.71 kcal Atomic # 6 Polarization: -20.53 SS G_CDS: 4.48 Total: -16.05 kcal Atomic # 7 Polarization: -84.12 SS G_CDS: -3.20 Total: -87.33 kcal Atomic # 8 Polarization: -24.05 SS G_CDS: -0.04 Total: -24.09 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.08 kcal Total: -75.34 2.37 -72.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360196206.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.481 kcal (2) G-P(sol) polarization free energy of solvation -75.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds