Wall clock time and date at job start Tue Mar 31 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48504 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47147 * 299.99651 * 3 2 1 6 6 H 1.48503 * 109.46994 * 59.99872 * 3 2 1 7 7 C 1.37885 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99439 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47372 * 179.97438 * 10 9 7 12 12 N 1.31135 * 126.55008 * 90.24691 * 11 10 9 13 13 C 1.34492 * 105.61228 * 180.12396 * 12 11 10 14 14 C 1.50703 * 126.28699 * 179.90726 * 13 12 11 15 15 C 1.53000 * 109.46912 * 269.71262 * 14 13 12 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 C 1.38430 * 122.54088 * 89.99747 * 17 16 15 19 19 C 1.33383 * 114.92357 * 179.97438 * 18 17 16 20 20 S 1.75877 * 109.59246 * 359.97438 * 19 18 17 21 21 C 1.33387 * 122.53982 * 269.71002 * 17 16 15 22 22 N 1.29949 * 107.42542 * 359.64449 * 13 12 11 23 23 O 1.21299 * 110.25146 * 0.22641 * 22 13 12 24 24 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47426 * 60.00129 * 9 7 2 26 26 H 1.08998 * 109.47405 * 300.00108 * 9 7 2 27 27 H 1.09002 * 109.46933 * 59.99749 * 10 9 7 28 28 H 1.08998 * 109.47010 * 300.00273 * 10 9 7 29 29 H 1.09001 * 109.46980 * 149.71390 * 14 13 12 30 30 H 1.08992 * 109.47158 * 29.71495 * 14 13 12 31 31 H 1.09002 * 109.47398 * 300.00078 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00258 * 15 14 13 33 33 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 34 34 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 35 35 H 1.08005 * 122.53446 * 359.96097 * 18 17 16 36 36 H 1.07997 * 125.20085 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.20269 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 7 1.1056 -5.6457 -1.0557 13 6 0.4731 -6.7311 -0.5756 14 6 -0.1598 -7.8285 -1.3918 15 6 -1.6234 -7.4791 -1.6683 16 6 -2.2658 -8.5929 -2.4975 17 6 -3.7073 -8.2485 -2.7704 18 6 -4.1031 -7.5307 -3.8859 19 6 -5.4157 -7.3120 -3.9770 20 16 -6.2315 -8.0372 -2.5979 21 6 -4.6991 -8.6171 -1.9583 22 7 0.5128 -6.6627 0.7215 23 8 1.0936 -5.6569 1.0713 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6239 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8909 29 1 -0.1082 -8.7674 -0.8404 30 1 0.3737 -7.9324 -2.3366 31 1 -2.1570 -7.3753 -0.7234 32 1 -1.6750 -6.5403 -2.2197 33 1 -1.7322 -8.6963 -3.4424 34 1 -2.2143 -9.5320 -1.9466 35 1 -3.4020 -7.1745 -4.6263 36 1 -5.9030 -6.7729 -4.7759 37 1 -4.5794 -9.1836 -1.0466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361267518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:07 Heat of formation + Delta-G solvation = 71.055842 kcal Electronic energy + Delta-G solvation = -19502.906831 eV Core-core repulsion = 16374.325948 eV Total energy + Delta-G solvation = -3128.580883 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -45.09442 -38.71202 -36.12928 -34.90543 -33.74979 -32.40383 -30.47374 -29.77787 -27.53986 -25.84080 -24.08770 -23.09194 -22.19908 -21.54366 -20.24444 -18.88751 -17.81882 -17.60133 -16.91849 -16.38326 -15.73376 -14.93962 -14.56168 -14.39948 -14.05093 -13.83755 -13.28511 -13.07858 -13.01769 -12.78051 -12.45041 -12.13542 -11.96570 -11.82395 -11.66396 -11.53958 -11.04629 -11.02038 -10.91399 -10.76666 -10.65850 -10.54367 -10.13413 -9.99877 -9.32139 -9.16518 -8.97648 -8.54129 -8.45999 -6.09952 -4.14659 0.83193 1.49203 1.62305 1.81241 2.49730 2.67479 3.27546 3.34263 3.37232 3.40665 3.97238 4.36805 4.42452 4.63269 4.73726 4.93186 5.06353 5.11061 5.26708 5.27761 5.38474 5.42033 5.50624 5.58124 5.69650 5.83738 5.94349 6.04168 6.12650 6.18246 6.25525 6.26245 6.34066 6.44998 6.62803 7.48918 7.55855 7.85721 8.21122 8.61924 8.90878 9.50330 11.01315 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015046 B = 0.002893 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.573543 B = 9674.759905 C =11048.376282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.059 3.941 3 Si 0.897 3.103 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.525 4.525 8 H 0.062 0.938 9 C 0.028 3.972 10 C -0.029 4.029 11 C 0.214 3.786 12 N -0.496 5.496 13 C 0.164 3.836 14 C -0.023 4.023 15 C -0.109 4.109 16 C -0.057 4.057 17 C -0.098 4.098 18 C -0.129 4.129 19 C -0.211 4.211 20 S 0.083 5.917 21 C -0.212 4.212 22 N -0.400 5.400 23 O 0.066 5.934 24 H 0.262 0.738 25 H 0.026 0.974 26 H 0.023 0.977 27 H 0.090 0.910 28 H 0.100 0.900 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.067 0.933 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.142 0.858 36 H 0.164 0.836 37 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.263 -18.419 -5.986 20.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.563 4.563 8 H 0.080 0.920 9 C -0.011 4.011 10 C -0.068 4.068 11 C -0.005 4.005 12 N -0.230 5.230 13 C -0.109 4.109 14 C -0.062 4.062 15 C -0.148 4.148 16 C -0.097 4.097 17 C -0.110 4.110 18 C -0.159 4.159 19 C -0.346 4.346 20 S 0.347 5.653 21 C -0.347 4.347 22 N -0.111 5.111 23 O 0.011 5.989 24 H 0.072 0.928 25 H 0.045 0.955 26 H 0.042 0.958 27 H 0.109 0.891 28 H 0.118 0.882 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.160 0.840 36 H 0.181 0.819 37 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -9.337 -19.089 -5.422 21.931 hybrid contribution 1.774 1.281 -0.383 2.221 sum -7.563 -17.807 -5.805 20.199 Atomic orbital electron populations 1.69978 1.06157 1.26858 1.49934 1.25019 0.94871 0.99462 0.94931 0.86455 0.80055 0.83363 0.77654 1.19557 1.20933 1.20932 1.21108 0.93196 0.90201 1.51833 0.91973 1.19157 0.93582 0.89853 0.98460 1.20750 0.97965 0.83708 1.04355 1.29628 0.94153 0.97020 0.79748 1.71925 1.16661 1.05288 1.29109 1.25730 0.99497 0.97028 0.88608 1.19893 0.95131 0.92695 0.98475 1.21536 0.93239 0.99274 1.00743 1.20312 0.90148 0.98458 1.00816 1.18946 0.96531 1.00361 0.95160 1.20163 0.95504 1.01015 0.99262 1.25603 0.97735 1.08141 1.03106 1.84264 1.10317 1.52360 1.18361 1.25475 0.94981 1.09067 1.05179 1.74536 1.16489 1.04449 1.15675 1.85263 1.52421 1.24994 1.36262 0.92805 0.95542 0.95827 0.89124 0.88225 0.89461 0.88791 0.91415 0.90755 0.90417 0.90761 0.84032 0.81866 0.81943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.15 13.29 55.43 0.74 -25.41 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.53 -14.03 9.11 -34.44 -0.31 -14.35 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.68 4.96 -27.88 -0.14 0.55 16 10 C -0.03 -0.55 5.78 -27.88 -0.16 -0.71 16 11 C 0.21 4.10 7.77 -13.06 -0.10 4.00 16 12 N -0.50 -9.44 11.55 -9.87 -0.11 -9.56 16 13 C 0.16 2.78 7.47 -156.37 -1.17 1.61 16 14 C -0.02 -0.28 5.84 -27.88 -0.16 -0.44 16 15 C -0.11 -1.25 5.18 -26.73 -0.14 -1.39 16 16 C -0.06 -0.51 5.47 -27.89 -0.15 -0.66 16 17 C -0.10 -0.99 5.06 -106.25 -0.54 -1.52 16 18 C -0.13 -1.29 9.98 -41.21 -0.41 -1.70 16 19 C -0.21 -1.99 11.23 29.04 0.33 -1.67 16 20 S 0.08 0.78 23.34 -107.50 -2.51 -1.73 16 21 C -0.21 -2.07 10.98 29.04 0.32 -1.75 16 22 N -0.40 -7.31 12.16 30.90 0.38 -6.94 16 23 O 0.07 1.26 11.31 18.11 0.20 1.46 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 26 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.09 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.10 1.82 8.14 -51.93 -0.42 1.39 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 32 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 33 H 0.08 0.60 8.13 -51.93 -0.42 0.18 16 34 H 0.07 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.14 1.24 8.06 -52.48 -0.42 0.81 16 36 H 0.16 1.21 8.06 -52.49 -0.42 0.78 16 37 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 338.38 15.07 5.10 5.10 Total: -1.00 -30.80 338.38 -9.00 -39.80 By element: Atomic # 1 Polarization: 2.93 SS G_CDS: -5.04 Total: -2.10 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -2.74 Total: -16.49 kcal Atomic # 7 Polarization: -42.90 SS G_CDS: 1.00 Total: -41.91 kcal Atomic # 8 Polarization: 1.26 SS G_CDS: 0.20 Total: 1.46 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.78 SS G_CDS: -2.51 Total: -1.73 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.80 -9.00 -39.80 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361267518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.854 kcal (2) G-P(sol) polarization free energy of solvation -30.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds