Wall clock time and date at job start Tue Mar 31 2020 06:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00151 * 2 1 4 4 H 1.48504 * 109.46980 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47147 * 299.99651 * 3 2 1 6 6 H 1.48503 * 109.46994 * 59.99872 * 3 2 1 7 7 C 1.37885 * 119.99733 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99439 * 179.97438 * 7 2 1 9 9 C 1.50692 * 119.99978 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47113 * 180.02562 * 9 7 2 11 11 C 1.50699 * 109.47372 * 179.97438 * 10 9 7 12 12 N 1.31135 * 126.55008 * 90.24691 * 11 10 9 13 13 C 1.34492 * 105.61228 * 180.12396 * 12 11 10 14 14 C 1.50703 * 126.28699 * 179.90726 * 13 12 11 15 15 C 1.53000 * 109.46912 * 269.71262 * 14 13 12 16 16 C 1.52997 * 109.47060 * 179.97438 * 15 14 13 17 17 C 1.50697 * 109.47466 * 180.02562 * 16 15 14 18 18 C 1.38430 * 122.54088 * 89.99747 * 17 16 15 19 19 C 1.33383 * 114.92357 * 179.97438 * 18 17 16 20 20 S 1.75877 * 109.59246 * 359.97438 * 19 18 17 21 21 C 1.33387 * 122.53982 * 269.71002 * 17 16 15 22 22 N 1.29949 * 107.42542 * 359.64449 * 13 12 11 23 23 O 1.21299 * 110.25146 * 0.22641 * 22 13 12 24 24 H 0.97000 * 120.00251 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47426 * 60.00129 * 9 7 2 26 26 H 1.08998 * 109.47405 * 300.00108 * 9 7 2 27 27 H 1.09002 * 109.46933 * 59.99749 * 10 9 7 28 28 H 1.08998 * 109.47010 * 300.00273 * 10 9 7 29 29 H 1.09001 * 109.46980 * 149.71390 * 14 13 12 30 30 H 1.08992 * 109.47158 * 29.71495 * 14 13 12 31 31 H 1.09002 * 109.47398 * 300.00078 * 15 14 13 32 32 H 1.09001 * 109.47194 * 60.00258 * 15 14 13 33 33 H 1.09002 * 109.47153 * 300.00319 * 16 15 14 34 34 H 1.08998 * 109.47533 * 59.99948 * 16 15 14 35 35 H 1.08005 * 122.53446 * 359.96097 * 18 17 16 36 36 H 1.07997 * 125.20085 * 180.02562 * 19 18 17 37 37 H 1.08000 * 125.20269 * 0.02562 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0017 10 6 2.2452 -3.6622 -0.0015 11 6 1.4917 -4.9672 -0.0020 12 7 1.1056 -5.6457 -1.0557 13 6 0.4731 -6.7311 -0.5756 14 6 -0.1598 -7.8285 -1.3918 15 6 -1.6234 -7.4791 -1.6683 16 6 -2.2658 -8.5929 -2.4975 17 6 -3.7073 -8.2485 -2.7704 18 6 -4.1031 -7.5307 -3.8859 19 6 -5.4157 -7.3120 -3.9770 20 16 -6.2315 -8.0372 -2.5979 21 6 -4.6991 -8.6171 -1.9583 22 7 0.5128 -6.6627 0.7215 23 8 1.0936 -5.6569 1.0713 24 1 -0.4850 0.8400 -0.0004 25 1 0.6246 -2.5563 -0.8920 26 1 0.6239 -2.5575 0.8880 27 1 2.8712 -3.6048 0.8890 28 1 2.8725 -3.6040 -0.8909 29 1 -0.1082 -8.7674 -0.8404 30 1 0.3737 -7.9324 -2.3366 31 1 -2.1570 -7.3753 -0.7234 32 1 -1.6750 -6.5403 -2.2197 33 1 -1.7322 -8.6963 -3.4424 34 1 -2.2143 -9.5320 -1.9466 35 1 -3.4020 -7.1745 -4.6263 36 1 -5.9030 -6.7729 -4.7759 37 1 -4.5794 -9.1836 -1.0466 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361267518.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:25:07 Heat of formation + Delta-G solvation = 53.619670 kcal Electronic energy + Delta-G solvation = -19503.662920 eV Core-core repulsion = 16374.325948 eV Total energy + Delta-G solvation = -3129.336972 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -46.52885 -39.45682 -37.40020 -36.50894 -35.14600 -34.05417 -31.99890 -30.79942 -28.42586 -27.73465 -25.14187 -24.54361 -23.54753 -22.71372 -21.65213 -19.63178 -19.12910 -18.62444 -18.49635 -18.13373 -16.59041 -16.48878 -15.96068 -15.62600 -15.42556 -14.90571 -14.62961 -14.31560 -13.90292 -13.85309 -13.65039 -13.52763 -13.37119 -12.94897 -12.85695 -12.71651 -12.56971 -12.52546 -12.23934 -12.08468 -11.93596 -11.80732 -11.66632 -11.54829 -11.31968 -10.74036 -10.57918 -9.71825 -9.29133 -8.20579 -6.32650 0.08632 0.15187 0.77199 1.07906 1.23979 1.45720 1.46337 1.59503 1.77149 1.88964 2.43735 2.73485 3.09629 3.14950 3.84514 3.91188 4.01971 4.13308 4.30658 4.33539 4.41838 4.53168 4.56417 4.58610 4.66130 4.73835 4.79533 4.90872 4.93376 5.03249 5.04993 5.17859 5.27097 5.43212 5.52871 5.53266 5.60252 5.77514 6.13001 6.83392 7.16617 7.37657 8.92073 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.015046 B = 0.002893 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.573543 B = 9674.759905 C =11048.376282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.001 4.001 3 Si 0.970 3.030 4 H -0.254 1.254 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.537 4.537 8 H 0.079 0.921 9 C 0.034 3.966 10 C -0.014 4.014 11 C 0.206 3.794 12 N -0.511 5.511 13 C 0.169 3.831 14 C -0.022 4.022 15 C -0.100 4.100 16 C -0.048 4.048 17 C -0.111 4.111 18 C -0.145 4.145 19 C -0.218 4.218 20 S 0.080 5.920 21 C -0.221 4.221 22 N -0.413 5.413 23 O 0.054 5.946 24 H 0.263 0.737 25 H -0.007 1.007 26 H -0.005 1.005 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.113 0.887 30 H 0.113 0.887 31 H 0.051 0.949 32 H 0.050 0.950 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.151 0.849 36 H 0.180 0.820 37 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.035 -19.189 -6.498 21.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.199 4.199 3 Si 0.795 3.205 4 H -0.177 1.177 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.575 4.575 8 H 0.097 0.903 9 C -0.004 4.004 10 C -0.053 4.053 11 C -0.013 4.013 12 N -0.246 5.246 13 C -0.104 4.104 14 C -0.061 4.061 15 C -0.139 4.139 16 C -0.088 4.088 17 C -0.124 4.124 18 C -0.175 4.175 19 C -0.353 4.353 20 S 0.344 5.656 21 C -0.357 4.357 22 N -0.126 5.126 23 O 0.002 5.998 24 H 0.072 0.928 25 H 0.011 0.989 26 H 0.014 0.986 27 H 0.133 0.867 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.111 0.889 34 H 0.112 0.888 35 H 0.168 0.832 36 H 0.198 0.802 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -8.086 -19.863 -5.920 22.248 hybrid contribution 1.315 1.466 -0.241 1.984 sum -6.772 -18.397 -6.161 20.549 Atomic orbital electron populations 1.70126 1.08105 1.27867 1.51451 1.26019 0.95680 1.03653 0.94564 0.85314 0.79414 0.78362 0.77444 1.17706 1.20826 1.20752 1.21599 0.94188 0.90933 1.50771 0.90292 1.18941 0.93978 0.92014 0.95485 1.20511 0.96727 0.81775 1.06311 1.29542 0.94423 0.97230 0.80105 1.71945 1.17131 1.06130 1.29370 1.26593 0.98132 0.97131 0.88522 1.20193 0.94922 0.91948 0.98997 1.21424 0.93077 0.99363 1.00082 1.20275 0.89257 0.97966 1.01294 1.19166 0.97262 1.00604 0.95321 1.20410 0.96003 1.01366 0.99755 1.25905 0.97836 1.08062 1.03484 1.84247 1.10480 1.52353 1.18524 1.25751 0.95011 1.09211 1.05688 1.74531 1.17112 1.04477 1.16499 1.85245 1.52772 1.25391 1.36371 0.92790 0.98886 0.98611 0.86705 0.86747 0.86910 0.86833 0.92996 0.93133 0.88870 0.88813 0.83158 0.80229 0.80621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.09 13.29 21.45 0.28 -55.81 16 2 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 3 Si 0.97 42.55 29.54 68.60 2.03 44.58 16 4 H -0.25 -10.31 7.11 99.48 0.71 -9.61 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.28 -12.19 7.11 99.48 0.71 -11.49 16 7 C -0.54 -28.59 9.11 25.60 0.23 -28.36 16 8 H 0.08 3.85 7.74 -2.91 -0.02 3.83 16 9 C 0.03 1.73 4.96 29.85 0.15 1.87 16 10 C -0.01 -0.55 5.78 29.85 0.17 -0.38 16 11 C 0.21 7.89 7.77 88.38 0.69 8.58 16 12 N -0.51 -19.22 11.55 -303.19 -3.50 -22.73 16 13 C 0.17 5.56 7.47 138.46 1.03 6.59 16 14 C -0.02 -0.48 5.84 29.85 0.17 -0.31 16 15 C -0.10 -2.19 5.18 30.59 0.16 -2.03 16 16 C -0.05 -0.75 5.47 29.85 0.16 -0.59 16 17 C -0.11 -2.12 5.06 -20.92 -0.11 -2.22 16 18 C -0.15 -2.79 9.98 21.22 0.21 -2.57 16 19 C -0.22 -3.96 11.23 66.72 0.75 -3.22 16 20 S 0.08 1.46 23.34 -56.49 -1.32 0.15 16 21 C -0.22 -4.11 10.98 66.72 0.73 -3.38 16 22 N -0.41 -14.86 12.16 -60.32 -0.73 -15.59 16 23 O 0.05 2.07 11.31 74.86 0.85 2.91 16 24 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 25 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 26 H 0.00 -0.25 8.14 -2.39 -0.02 -0.27 16 27 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 28 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 29 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 31 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.09 1.19 8.13 -2.39 -0.02 1.17 16 34 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 35 H 0.15 2.50 8.06 -2.91 -0.02 2.48 16 36 H 0.18 2.49 8.06 -2.91 -0.02 2.47 16 37 H 0.18 2.64 8.06 -2.91 -0.02 2.61 16 Total: -1.00 -66.87 338.38 3.49 -63.38 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 1.06 Total: 8.72 kcal Atomic # 6 Polarization: -30.44 SS G_CDS: 4.82 Total: -25.62 kcal Atomic # 7 Polarization: -90.18 SS G_CDS: -3.95 Total: -94.13 kcal Atomic # 8 Polarization: 2.07 SS G_CDS: 0.85 Total: 2.91 kcal Atomic # 14 Polarization: 42.55 SS G_CDS: 2.03 Total: 44.58 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.15 kcal Total: -66.87 3.49 -63.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361267518.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.004 kcal (2) G-P(sol) polarization free energy of solvation -66.871 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds