Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.32614 * 123.42642 * 90.00107 * 3 2 1 5 5 C 1.50700 * 124.61089 * 359.97438 * 4 3 2 6 6 S 1.75473 * 110.78028 * 179.97438 * 4 3 2 7 7 C 1.70446 * 92.51915 * 0.02562 * 6 4 3 8 8 N 1.38800 * 124.64149 * 179.97438 * 7 6 4 9 9 C 1.34770 * 120.00172 * 359.97246 * 8 7 6 10 10 O 1.21287 * 120.00658 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47143 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47558 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00492 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99549 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00316 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47180 * 119.99983 * 17 15 13 20 20 H 1.48500 * 109.46943 * 240.00442 * 17 15 13 21 21 C 1.36986 * 110.70738 * 359.72309 * 7 6 4 22 22 C 1.43195 * 123.57947 * 180.25305 * 21 7 6 23 23 N 3.80009 * 96.80873 * 288.86141 * 2 1 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09001 * 109.47604 * 89.99746 * 5 4 3 30 30 H 1.09002 * 109.47485 * 209.99968 * 5 4 3 31 31 H 1.09001 * 109.47066 * 329.99891 * 5 4 3 32 32 H 0.97003 * 119.99567 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47505 * 300.00294 * 11 9 8 34 34 H 1.09002 * 109.47083 * 60.00731 * 11 9 8 35 35 H 1.09003 * 109.47327 * 300.00443 * 12 11 9 36 36 H 1.09001 * 109.46976 * 60.00037 * 12 11 9 37 37 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2758 2.1096 1.1068 5 6 2.0874 1.5784 2.5044 6 16 2.8471 3.7236 0.7226 7 6 2.7468 3.4412 -0.9553 8 7 3.0750 4.3704 -1.9328 9 6 3.5080 5.5965 -1.5787 10 8 3.6114 5.8881 -0.4060 11 6 3.8649 6.6051 -2.6401 12 6 4.3242 7.9043 -1.9753 13 6 4.6805 8.9131 -3.0366 14 1 4.5889 8.6534 -4.0809 15 6 5.1244 10.1672 -2.6745 16 7 5.2374 10.4829 -1.4027 17 14 5.5654 11.4180 -3.9900 18 1 5.3531 10.8198 -5.3327 19 1 4.7040 12.6183 -3.8405 20 1 6.9902 11.8097 -3.8429 21 6 2.3032 2.1698 -1.2068 22 6 2.1226 1.6403 -2.5249 23 7 1.9805 1.2198 -3.5707 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.0108 1.1074 2.8417 30 1 1.8330 2.3998 3.1742 31 1 1.2823 0.8436 2.5084 32 1 2.9926 4.1371 -2.8707 33 1 4.6696 6.2106 -3.2604 34 1 2.9913 6.8036 -3.2612 35 1 3.5198 8.2991 -1.3547 36 1 5.1979 7.7056 -1.3545 37 1 5.5500 11.3651 -1.1480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361724279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -5.685613 kcal Electronic energy + Delta-G solvation = -19917.145319 eV Core-core repulsion = 16785.236677 eV Total energy + Delta-G solvation = -3131.908642 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.26691 -38.80113 -36.23155 -35.38815 -33.69351 -32.38501 -31.55085 -30.91714 -26.94379 -25.70480 -24.81250 -23.21378 -21.92209 -20.46719 -19.15999 -18.37086 -17.75403 -16.49856 -16.09616 -15.72713 -15.43965 -14.69756 -14.52644 -14.18701 -13.98626 -13.77213 -13.50005 -13.30741 -13.00710 -12.96988 -12.70854 -12.39359 -12.31026 -12.08539 -11.96935 -11.62113 -11.38799 -11.16647 -11.03566 -10.85671 -10.65757 -10.47262 -10.16078 -9.82039 -9.48894 -9.22416 -8.43875 -8.35872 -8.01810 -6.07376 -4.12423 0.69055 1.21421 1.81944 1.93796 2.65060 2.68935 2.88537 3.26674 3.34564 3.37465 3.43739 4.05247 4.38709 4.62595 4.75526 4.96910 5.07107 5.13899 5.20915 5.27057 5.28458 5.42647 5.48858 5.64553 5.72216 5.75388 5.85651 5.92459 5.94989 6.03611 6.22200 6.32626 6.58184 7.08920 7.49342 7.59550 7.65721 7.91201 7.98117 8.27552 8.94646 9.52261 11.03448 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029090 B = 0.003255 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.311659 B = 8601.066345 C = 9436.659712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.065 4.065 3 C -0.043 4.043 4 C -0.262 4.262 5 C -0.075 4.075 6 S 0.326 5.674 7 C 0.076 3.924 8 N -0.642 5.642 9 C 0.504 3.496 10 O -0.489 6.489 11 C -0.126 4.126 12 C 0.036 3.964 13 C -0.531 4.531 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.888 5.888 17 Si 0.894 3.106 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.137 4.137 22 C 0.283 3.717 23 N -0.436 5.436 24 H 0.057 0.943 25 H 0.059 0.941 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.418 0.582 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.027 0.973 36 H 0.027 0.973 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.374 -19.482 6.296 21.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.105 4.105 3 C -0.054 4.054 4 C -0.379 4.379 5 C -0.134 4.134 6 S 0.589 5.411 7 C -0.147 4.147 8 N -0.286 5.286 9 C 0.294 3.706 10 O -0.362 6.362 11 C -0.166 4.166 12 C -0.001 4.001 13 C -0.569 4.569 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.526 5.526 17 Si 0.722 3.278 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.159 4.159 22 C -0.032 4.032 23 N -0.114 5.114 24 H 0.076 0.924 25 H 0.078 0.922 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.255 0.745 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.045 0.955 36 H 0.045 0.955 37 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.984 -18.405 6.474 20.722 hybrid contribution -0.142 -0.435 -1.916 1.969 sum -7.125 -18.840 4.558 20.652 Atomic orbital electron populations 1.21717 0.94566 1.01638 1.02400 1.20234 0.96156 0.91227 1.02863 1.19106 1.00792 0.96563 0.88958 1.24684 1.12063 1.01922 0.99278 1.20237 1.02380 1.00902 0.89840 1.84578 1.60609 1.06379 0.89500 1.22154 1.01290 0.92110 0.99109 1.43554 1.63869 1.12247 1.08936 1.22344 0.74722 0.81099 0.92444 1.90604 1.49871 1.76110 1.19589 1.21974 1.02589 0.95948 0.96039 1.18962 0.97586 0.87793 0.95787 1.21186 1.45140 0.97735 0.92815 0.92421 1.25011 0.95475 0.98402 0.95357 1.69994 1.46225 1.21078 1.15303 0.86513 0.78138 0.81359 0.81838 1.19713 1.20924 1.20931 1.15720 1.19614 0.92959 0.87558 1.24922 0.92821 0.93578 0.91910 1.81259 1.11118 1.07952 1.11034 0.92388 0.92191 0.92683 0.90308 0.91345 0.90998 0.91320 0.90848 0.74502 0.89163 0.89164 0.95459 0.95456 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.89 37.16 0.37 -0.77 16 2 C -0.07 -0.56 5.44 -27.88 -0.15 -0.71 16 3 C -0.04 -0.45 5.26 -104.02 -0.55 -1.00 16 4 C -0.26 -2.67 6.43 -36.21 -0.23 -2.90 16 5 C -0.08 -0.54 9.74 36.01 0.35 -0.19 16 6 S 0.33 4.15 19.94 -107.50 -2.14 2.00 16 7 C 0.08 1.02 6.98 -14.85 -0.10 0.92 16 8 N -0.64 -8.83 5.37 -11.61 -0.06 -8.90 16 9 C 0.50 8.56 7.79 -10.99 -0.09 8.47 16 10 O -0.49 -9.64 13.41 5.55 0.07 -9.57 16 11 C -0.13 -2.29 5.64 -27.88 -0.16 -2.45 16 12 C 0.04 0.90 4.26 -27.88 -0.12 0.78 16 13 C -0.53 -14.30 9.11 -34.44 -0.31 -14.61 16 14 H 0.06 1.48 7.74 -52.48 -0.41 1.07 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 17 Si 0.89 21.01 29.54 -169.99 -5.02 15.99 16 18 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 19 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 C -0.14 -1.70 5.88 -105.92 -0.62 -2.33 16 22 C 0.28 3.75 14.22 -22.48 -0.32 3.43 16 23 N -0.44 -6.40 18.54 41.84 0.78 -5.62 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.43 7.88 -51.93 -0.41 0.02 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 0.54 7.28 -51.93 -0.38 0.16 16 28 H 0.07 0.63 7.67 -51.93 -0.40 0.23 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.44 7.05 -51.93 -0.37 0.07 16 32 H 0.42 4.87 8.15 -40.82 -0.33 4.53 16 33 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.09 1.49 8.14 -51.93 -0.42 1.07 16 35 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 36 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 37 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 336.63 15.07 5.07 5.07 Total: -1.00 -31.28 336.63 -7.40 -38.68 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -4.80 Total: -2.38 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -2.03 Total: -9.79 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 1.45 Total: -40.01 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.07 Total: -9.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: 4.15 SS G_CDS: -2.14 Total: 2.00 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.28 -7.40 -38.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361724279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.992 kcal (2) G-P(sol) polarization free energy of solvation -31.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.402 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.678 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds