Wall clock time and date at job start Tue Mar 31 2020 06:40:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.32614 * 123.42642 * 90.00107 * 3 2 1 5 5 C 1.50700 * 124.61089 * 359.97438 * 4 3 2 6 6 S 1.75473 * 110.78028 * 179.97438 * 4 3 2 7 7 C 1.70446 * 92.51915 * 0.02562 * 6 4 3 8 8 N 1.38800 * 124.64149 * 179.97438 * 7 6 4 9 9 C 1.34770 * 120.00172 * 359.97246 * 8 7 6 10 10 O 1.21287 * 120.00658 * 0.02562 * 9 8 7 11 11 C 1.50705 * 119.99741 * 179.97438 * 9 8 7 12 12 C 1.53000 * 109.47143 * 180.02562 * 11 9 8 13 13 C 1.50696 * 109.47558 * 180.02562 * 12 11 9 14 14 H 1.08003 * 119.99767 * 359.97438 * 13 12 11 15 15 C 1.37877 * 120.00492 * 180.02562 * 13 12 11 16 16 N 1.31517 * 119.99549 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 120.00316 * 180.02562 * 15 13 12 18 18 H 1.48507 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48496 * 109.47180 * 119.99983 * 17 15 13 20 20 H 1.48500 * 109.46943 * 240.00442 * 17 15 13 21 21 C 1.36986 * 110.70738 * 359.72309 * 7 6 4 22 22 C 1.43195 * 123.57947 * 180.25305 * 21 7 6 23 23 N 3.80009 * 96.80873 * 288.86141 * 2 1 3 24 24 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 28 28 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 29 29 H 1.09001 * 109.47604 * 89.99746 * 5 4 3 30 30 H 1.09002 * 109.47485 * 209.99968 * 5 4 3 31 31 H 1.09001 * 109.47066 * 329.99891 * 5 4 3 32 32 H 0.97003 * 119.99567 * 179.97438 * 8 7 6 33 33 H 1.08993 * 109.47505 * 300.00294 * 11 9 8 34 34 H 1.09002 * 109.47083 * 60.00731 * 11 9 8 35 35 H 1.09003 * 109.47327 * 300.00443 * 12 11 9 36 36 H 1.09001 * 109.46976 * 60.00037 * 12 11 9 37 37 H 0.97002 * 119.99658 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2758 2.1096 1.1068 5 6 2.0874 1.5784 2.5044 6 16 2.8471 3.7236 0.7226 7 6 2.7468 3.4412 -0.9553 8 7 3.0750 4.3704 -1.9328 9 6 3.5080 5.5965 -1.5787 10 8 3.6114 5.8881 -0.4060 11 6 3.8649 6.6051 -2.6401 12 6 4.3242 7.9043 -1.9753 13 6 4.6805 8.9131 -3.0366 14 1 4.5889 8.6534 -4.0809 15 6 5.1244 10.1672 -2.6745 16 7 5.2374 10.4829 -1.4027 17 14 5.5654 11.4180 -3.9900 18 1 5.3531 10.8198 -5.3327 19 1 4.7040 12.6183 -3.8405 20 1 6.9902 11.8097 -3.8429 21 6 2.3032 2.1698 -1.2068 22 6 2.1226 1.6403 -2.5249 23 7 1.9805 1.2198 -3.5707 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 3.0108 1.1074 2.8417 30 1 1.8330 2.3998 3.1742 31 1 1.2823 0.8436 2.5084 32 1 2.9926 4.1371 -2.8707 33 1 4.6696 6.2106 -3.2604 34 1 2.9913 6.8036 -3.2612 35 1 3.5198 8.2991 -1.3547 36 1 5.1979 7.7056 -1.3545 37 1 5.5500 11.3651 -1.1480 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361724279.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:40:14 Heat of formation + Delta-G solvation = -23.791969 kcal Electronic energy + Delta-G solvation = -19917.930469 eV Core-core repulsion = 16785.236677 eV Total energy + Delta-G solvation = -3132.693792 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.53359 -39.80409 -37.28385 -36.55868 -35.63105 -33.47334 -32.85432 -32.02396 -28.34928 -26.96382 -25.80860 -24.41820 -23.24101 -21.91510 -20.05245 -19.46567 -19.15450 -18.19115 -17.23887 -17.03193 -16.57989 -16.46433 -15.65862 -15.34218 -15.02173 -14.72754 -14.50062 -14.37504 -14.26743 -14.20773 -13.91217 -13.38590 -13.32104 -13.20882 -13.05268 -12.86091 -12.83061 -12.49436 -12.46275 -12.00138 -11.90365 -11.81912 -11.59980 -11.43106 -11.27137 -10.74521 -10.57402 -9.35306 -9.00168 -8.19450 -6.32193 -0.36532 0.23192 0.93430 0.99788 1.38582 1.42882 1.42991 1.55852 1.59077 1.71319 2.38710 2.42195 3.00871 3.14735 3.71072 3.79026 4.02355 4.28206 4.35223 4.41775 4.44042 4.51866 4.62200 4.69595 4.90255 4.92103 4.96080 5.01974 5.12150 5.18203 5.30928 5.45554 5.49319 5.56862 5.60210 5.83203 5.91580 6.15169 6.41786 6.72246 6.87706 7.37904 8.92915 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.029090 B = 0.003255 C = 0.002966 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 962.311659 B = 8601.066345 C = 9436.659712 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.063 4.063 3 C -0.052 4.052 4 C -0.237 4.237 5 C -0.079 4.079 6 S 0.289 5.711 7 C 0.054 3.946 8 N -0.629 5.629 9 C 0.510 3.490 10 O -0.524 6.524 11 C -0.116 4.116 12 C 0.042 3.958 13 C -0.543 4.543 14 H 0.073 0.927 15 C -0.002 4.002 16 N -0.933 5.933 17 Si 0.968 3.032 18 H -0.256 1.256 19 H -0.281 1.281 20 H -0.281 1.281 21 C -0.126 4.126 22 C 0.296 3.704 23 N -0.458 5.458 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.036 0.964 27 H 0.103 0.897 28 H 0.061 0.939 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.428 0.572 33 H 0.112 0.888 34 H 0.112 0.888 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.979 -21.251 5.697 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.063 4.063 4 C -0.355 4.355 5 C -0.137 4.137 6 S 0.553 5.447 7 C -0.168 4.168 8 N -0.274 5.274 9 C 0.300 3.700 10 O -0.400 6.400 11 C -0.155 4.155 12 C 0.004 3.996 13 C -0.581 4.581 14 H 0.092 0.908 15 C -0.200 4.200 16 N -0.573 5.573 17 Si 0.792 3.208 18 H -0.180 1.180 19 H -0.207 1.207 20 H -0.207 1.207 21 C -0.148 4.148 22 C -0.019 4.019 23 N -0.136 5.136 24 H 0.092 0.908 25 H 0.086 0.914 26 H 0.055 0.945 27 H 0.121 0.879 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.093 0.907 31 H 0.112 0.888 32 H 0.267 0.733 33 H 0.130 0.870 34 H 0.130 0.870 35 H 0.011 0.989 36 H 0.011 0.989 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.605 -20.218 5.848 22.378 hybrid contribution 0.003 -0.008 -1.649 1.649 sum -7.603 -20.226 4.200 22.012 Atomic orbital electron populations 1.21717 0.93962 1.02570 1.01920 1.20315 0.96575 0.89620 1.03744 1.19376 1.01121 0.97702 0.88127 1.24937 1.10006 0.99747 1.00780 1.20430 1.03919 1.01630 0.87757 1.84738 1.61167 1.08936 0.89823 1.22204 1.03130 0.92392 0.99031 1.43119 1.63280 1.11336 1.09640 1.21914 0.74758 0.81874 0.91464 1.90611 1.51572 1.77141 1.20684 1.21704 1.04171 0.93450 0.96185 1.18719 0.95027 0.90844 0.94984 1.21695 1.44279 0.98248 0.93919 0.90837 1.26022 0.95483 1.00928 0.97575 1.70149 1.47610 1.21744 1.17753 0.85357 0.77643 0.78388 0.79378 1.17972 1.20692 1.20705 1.15934 1.18413 0.92626 0.87850 1.24977 0.92187 0.92942 0.91788 1.81272 1.11847 1.08801 1.11675 0.90792 0.91376 0.94464 0.87910 0.92012 0.89492 0.90733 0.88757 0.73285 0.86969 0.86966 0.98945 0.98946 0.92809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.88 9.89 71.98 0.71 -1.17 16 2 C -0.06 -0.90 5.44 29.85 0.16 -0.74 16 3 C -0.05 -1.01 5.26 -19.40 -0.10 -1.11 16 4 C -0.24 -4.37 6.43 24.53 0.16 -4.21 16 5 C -0.08 -0.90 9.74 71.24 0.69 -0.20 16 6 S 0.29 7.32 19.94 -56.49 -1.13 6.20 16 7 C 0.05 1.42 6.98 83.29 0.58 2.00 16 8 N -0.63 -17.07 5.37 -309.04 -1.66 -18.73 16 9 C 0.51 17.55 7.79 87.66 0.68 18.24 16 10 O -0.52 -21.54 13.41 -3.05 -0.04 -21.58 16 11 C -0.12 -4.19 5.64 29.85 0.17 -4.02 16 12 C 0.04 2.15 4.26 29.85 0.13 2.28 16 13 C -0.54 -29.47 9.11 25.60 0.23 -29.24 16 14 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 15 C 0.00 -0.11 5.46 84.65 0.46 0.35 16 16 N -0.93 -56.77 13.29 21.45 0.28 -56.48 16 17 Si 0.97 43.14 29.54 68.60 2.03 45.16 16 18 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 19 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 20 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 21 C -0.13 -2.99 5.88 -20.71 -0.12 -3.11 16 22 C 0.30 7.50 14.22 88.33 1.26 8.76 16 23 N -0.46 -12.95 18.54 19.00 0.35 -12.60 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.07 0.77 7.88 -2.39 -0.02 0.76 16 26 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.10 1.00 7.28 -2.39 -0.02 0.98 16 28 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.09 0.74 7.05 -2.39 -0.02 0.72 16 32 H 0.43 9.55 8.15 -92.71 -0.76 8.79 16 33 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 34 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 35 H -0.01 -0.45 8.10 -2.39 -0.02 -0.47 16 36 H -0.01 -0.46 8.10 -2.39 -0.02 -0.47 16 37 H 0.26 15.02 8.31 -92.71 -0.77 14.25 16 Total: -1.00 -69.47 336.63 5.20 -64.27 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: 0.35 Total: 5.93 kcal Atomic # 6 Polarization: -17.18 SS G_CDS: 5.01 Total: -12.17 kcal Atomic # 7 Polarization: -86.79 SS G_CDS: -1.02 Total: -87.81 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.16 kcal Atomic # 16 Polarization: 7.32 SS G_CDS: -1.13 Total: 6.20 kcal Total: -69.47 5.20 -64.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361724279.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.480 kcal (2) G-P(sol) polarization free energy of solvation -69.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds