Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64874 * 359.69686 * 13 11 10 15 15 C 1.55132 * 104.72352 * 155.81402 * 14 13 11 16 16 C 1.55156 * 101.48345 * 37.29314 * 15 14 13 17 17 C 1.47017 * 125.64994 * 179.97438 * 13 11 10 18 18 H 1.09004 * 109.88576 * 300.44684 * 17 13 11 19 19 C 1.50706 * 109.88195 * 61.60634 * 17 13 11 20 20 C 1.38677 * 120.42123 * 218.26825 * 19 17 13 21 21 C 1.38626 * 118.41800 * 179.78630 * 20 19 17 22 22 C 1.38226 * 119.16446 * 0.50886 * 21 20 19 23 23 N 1.31856 * 120.76045 * 359.73182 * 22 21 20 24 24 C 1.31890 * 121.72809 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 27 27 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 28 28 H 1.09000 * 110.36548 * 274.74739 * 14 13 11 29 29 H 1.09004 * 110.36624 * 37.06360 * 14 13 11 30 30 H 1.08996 * 111.19386 * 279.19042 * 15 14 13 31 31 H 1.09001 * 110.93684 * 155.29005 * 15 14 13 32 32 H 1.08998 * 110.72290 * 205.96613 * 16 15 14 33 33 H 1.09003 * 110.87129 * 82.77124 * 16 15 14 34 34 H 1.07998 * 120.78707 * 0.02562 * 20 19 17 35 35 H 1.07998 * 120.41475 * 180.26499 * 21 20 19 36 36 H 1.07999 * 119.62246 * 179.74987 * 22 21 20 37 37 H 1.07999 * 119.61793 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3152 -6.2446 -0.0264 15 6 4.8052 -7.5831 0.5859 16 6 3.7733 -8.5851 0.0041 17 6 2.4668 -7.7639 -0.0143 18 1 1.8739 -7.9904 0.8719 19 6 1.6779 -8.0841 -1.2577 20 6 0.6037 -8.9594 -1.2019 21 6 -0.0957 -9.2208 -2.3698 22 6 0.3045 -8.6130 -3.5450 23 7 1.3342 -7.7897 -3.5617 24 6 2.0191 -7.5133 -2.4690 25 1 -0.4851 0.8400 -0.0004 26 1 3.1212 -3.7293 -0.8992 27 1 3.1279 -3.7332 0.8807 28 1 4.6793 -6.1363 -1.0481 29 1 4.6446 -5.4049 0.5856 30 1 4.7561 -7.5598 1.6746 31 1 5.8138 -7.8202 0.2474 32 1 3.6725 -9.4552 0.6527 33 1 4.0528 -8.8884 -1.0049 34 1 0.3165 -9.4232 -0.2698 35 1 -0.9402 -9.8940 -2.3624 36 1 -0.2326 -8.8146 -4.4601 37 1 2.8566 -6.8335 -2.5216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372618812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = 3.631310 kcal Electronic energy + Delta-G solvation = -20686.136282 eV Core-core repulsion = 17554.631652 eV Total energy + Delta-G solvation = -3131.504630 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.72370 -39.24012 -37.18445 -33.01679 -32.42288 -31.82461 -31.61977 -29.02371 -28.00446 -25.48707 -24.01942 -23.56279 -22.41040 -21.21332 -19.18123 -17.72889 -17.24133 -16.91054 -16.38685 -15.69062 -15.33564 -14.80070 -14.76999 -14.35449 -13.97770 -13.86893 -13.43819 -13.40677 -13.09899 -13.00177 -12.55899 -12.46654 -12.23551 -11.80464 -11.50737 -11.32615 -11.07884 -11.03342 -11.02910 -10.76302 -9.82553 -9.79278 -9.47580 -9.43039 -9.05104 -8.95306 -8.54303 -8.22952 -6.49477 -6.20565 -3.91420 1.10873 1.30656 2.87628 3.05146 3.24189 3.26052 3.29758 3.59217 3.83391 4.20572 4.26630 4.37508 4.46853 4.64294 4.82380 4.82823 4.96299 5.02489 5.08997 5.14492 5.18371 5.30192 5.47493 5.47941 5.53200 5.60128 5.65284 5.69308 5.80539 5.91153 5.93320 6.09570 6.13088 6.19981 6.42293 6.70597 7.59724 7.64389 8.01102 8.35723 8.55149 9.24446 10.86854 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.004143 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.115529 B = 6757.272459 C = 7566.877569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.507 6.507 13 N -0.623 5.623 14 C 0.098 3.902 15 C -0.131 4.131 16 C -0.122 4.122 17 C 0.183 3.817 18 H 0.084 0.916 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.173 4.173 22 C 0.093 3.907 23 N -0.483 5.483 24 C 0.118 3.882 25 H 0.269 0.731 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.078 0.922 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.863 -20.352 -0.836 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.380 6.380 13 N -0.361 5.361 14 C -0.026 4.026 15 C -0.169 4.169 16 C -0.160 4.160 17 C 0.078 3.922 18 H 0.102 0.898 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.192 4.192 22 C -0.064 4.064 23 N -0.191 5.191 24 C -0.039 4.039 25 H 0.079 0.921 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.097 0.903 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.085 -20.048 -1.619 21.324 hybrid contribution 1.623 0.965 0.786 2.045 sum 8.708 -19.083 -0.833 20.993 Atomic orbital electron populations 1.70007 1.05973 1.27571 1.46762 1.24982 0.95008 0.98998 0.94502 0.86229 0.79250 0.81250 0.78808 1.19909 1.20799 1.19928 1.22815 0.94852 0.91622 1.59104 0.90986 1.85419 1.04883 0.96311 1.96706 1.23513 1.06512 0.94901 1.04763 1.20065 0.85755 0.85400 0.75123 1.90718 1.14909 1.84998 1.47375 1.48663 1.06724 1.04685 1.76001 1.22395 0.80232 0.98769 1.01159 1.22825 0.98957 0.94013 1.01138 1.22703 0.93119 0.97834 1.02378 1.20306 0.95296 0.81858 0.94755 0.89763 1.21047 0.97580 0.98336 0.96631 1.21371 0.93223 0.95767 0.98630 1.22074 1.01176 1.02160 0.93830 1.22743 0.93307 0.92476 0.97889 1.67689 1.06863 1.13604 1.30971 1.22456 0.97810 0.96208 0.87425 0.92125 0.89315 0.89291 0.91284 0.89991 0.90270 0.89668 0.89796 0.90325 0.85021 0.84893 0.82971 0.83508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.45 13.22 55.49 0.73 -25.71 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.54 29.55 -169.99 -5.02 16.51 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 5 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 6 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 7 C -0.54 -15.40 9.50 30.94 0.29 -15.10 16 8 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.03 5.16 36.00 0.19 -2.84 16 11 C 0.55 10.58 7.51 -10.99 -0.08 10.50 16 12 O -0.51 -11.84 15.70 5.56 0.09 -11.75 16 13 N -0.62 -8.75 2.34 -164.18 -0.38 -9.13 16 14 C 0.10 0.98 6.70 -2.41 -0.02 0.96 16 15 C -0.13 -0.94 7.10 -24.46 -0.17 -1.11 16 16 C -0.12 -0.96 6.46 -24.90 -0.16 -1.12 16 17 C 0.18 2.16 3.07 -68.11 -0.21 1.95 16 18 H 0.08 1.03 8.06 -51.93 -0.42 0.61 16 19 C -0.13 -1.77 4.09 -104.48 -0.43 -2.19 16 20 C -0.06 -0.76 9.84 -39.28 -0.39 -1.14 16 21 C -0.17 -1.94 10.11 -39.44 -0.40 -2.34 16 22 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 23 N -0.48 -7.44 10.36 -13.25 -0.14 -7.57 16 24 C 0.12 1.75 10.33 -17.55 -0.18 1.57 16 25 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 26 H 0.09 1.72 8.14 -51.92 -0.42 1.29 16 27 H 0.09 1.69 7.85 -51.92 -0.41 1.28 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.81 7.48 -51.93 -0.39 0.42 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.08 0.60 7.81 -51.93 -0.41 0.20 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.09 8.06 -52.49 -0.42 0.66 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.15 2.10 7.69 -52.49 -0.40 1.69 16 LS Contribution 329.49 15.07 4.97 4.97 Total: -1.00 -36.10 329.49 -8.77 -44.87 By element: Atomic # 1 Polarization: 4.48 SS G_CDS: -4.95 Total: -0.48 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -1.85 Total: -7.85 kcal Atomic # 7 Polarization: -42.63 SS G_CDS: 0.21 Total: -42.42 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.10 -8.77 -44.87 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372618812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.504 kcal (2) G-P(sol) polarization free energy of solvation -36.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.873 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds