Wall clock time and date at job start Tue Mar 31 2020 06:17:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86800 * 119.99552 * 2 1 4 4 H 1.48501 * 109.47145 * 239.99892 * 3 2 1 5 5 H 1.48496 * 109.47291 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47229 * 120.00083 * 3 2 1 7 7 C 1.38798 * 120.00155 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99590 * 179.72397 * 7 2 1 9 9 S 1.76199 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 179.72368 * 9 7 2 11 11 C 1.50698 * 109.47116 * 179.97438 * 10 9 7 12 12 O 1.21276 * 119.99994 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00022 * 179.97438 * 11 10 9 14 14 C 1.47425 * 125.64874 * 359.69686 * 13 11 10 15 15 C 1.55132 * 104.72352 * 155.81402 * 14 13 11 16 16 C 1.55156 * 101.48345 * 37.29314 * 15 14 13 17 17 C 1.47017 * 125.64994 * 179.97438 * 13 11 10 18 18 H 1.09004 * 109.88576 * 300.44684 * 17 13 11 19 19 C 1.50706 * 109.88195 * 61.60634 * 17 13 11 20 20 C 1.38677 * 120.42123 * 218.26825 * 19 17 13 21 21 C 1.38626 * 118.41800 * 179.78630 * 20 19 17 22 22 C 1.38226 * 119.16446 * 0.50886 * 21 20 19 23 23 N 1.31856 * 120.76045 * 359.73182 * 22 21 20 24 24 C 1.31890 * 121.72809 * 359.97438 * 23 22 21 25 25 H 0.97004 * 120.00604 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47163 * 300.00283 * 10 9 7 27 27 H 1.08999 * 109.47347 * 59.99806 * 10 9 7 28 28 H 1.09000 * 110.36548 * 274.74739 * 14 13 11 29 29 H 1.09004 * 110.36624 * 37.06360 * 14 13 11 30 30 H 1.08996 * 111.19386 * 279.19042 * 15 14 13 31 31 H 1.09001 * 110.93684 * 155.29005 * 15 14 13 32 32 H 1.08998 * 110.72290 * 205.96613 * 16 15 14 33 33 H 1.09003 * 110.87129 * 82.77124 * 16 15 14 34 34 H 1.07998 * 120.78707 * 0.02562 * 20 19 17 35 35 H 1.07998 * 120.41475 * 180.26499 * 21 20 19 36 36 H 1.07999 * 119.62246 * 179.74987 * 22 21 20 37 37 H 1.07999 * 119.61793 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2851 2.7464 0.0006 6 1 3.1039 1.6966 1.2125 7 6 2.0103 -1.2020 0.0005 8 1 3.0902 -1.2019 -0.0040 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8913 -0.0073 11 6 1.9875 -5.3026 -0.0077 12 8 0.7913 -5.5023 -0.0037 13 7 2.8443 -6.3430 -0.0136 14 6 4.3152 -6.2446 -0.0264 15 6 4.8052 -7.5831 0.5859 16 6 3.7733 -8.5851 0.0041 17 6 2.4668 -7.7639 -0.0143 18 1 1.8739 -7.9904 0.8719 19 6 1.6779 -8.0841 -1.2577 20 6 0.6037 -8.9594 -1.2019 21 6 -0.0957 -9.2208 -2.3698 22 6 0.3045 -8.6130 -3.5450 23 7 1.3342 -7.7897 -3.5617 24 6 2.0191 -7.5133 -2.4690 25 1 -0.4851 0.8400 -0.0004 26 1 3.1212 -3.7293 -0.8992 27 1 3.1279 -3.7332 0.8807 28 1 4.6793 -6.1363 -1.0481 29 1 4.6446 -5.4049 0.5856 30 1 4.7561 -7.5598 1.6746 31 1 5.8138 -7.8202 0.2474 32 1 3.6725 -9.4552 0.6527 33 1 4.0528 -8.8884 -1.0049 34 1 0.3165 -9.4232 -0.2698 35 1 -0.9402 -9.8940 -2.3624 36 1 -0.2326 -8.8146 -4.4601 37 1 2.8566 -6.8335 -2.5216 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000372618812.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:03 Heat of formation + Delta-G solvation = -19.859160 kcal Electronic energy + Delta-G solvation = -20687.154905 eV Core-core repulsion = 17554.631652 eV Total energy + Delta-G solvation = -3132.523253 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.76750 -40.40214 -38.40745 -34.60610 -34.04083 -32.93269 -32.53435 -30.44756 -28.96503 -27.68189 -25.00691 -24.55279 -23.39943 -22.03828 -20.50339 -19.57722 -18.24129 -18.19799 -17.50423 -16.89986 -16.72681 -16.60929 -16.03805 -15.88023 -15.19996 -15.01290 -14.63693 -14.41894 -14.17331 -14.07086 -13.96349 -13.70113 -13.24501 -13.13978 -13.06788 -12.87594 -12.64817 -12.25473 -12.10707 -11.75741 -11.68863 -11.14417 -11.00975 -10.71454 -10.48240 -10.30886 -9.99055 -9.66513 -8.70105 -8.36152 -6.15239 0.13661 0.33845 1.22516 1.42998 1.43571 1.53782 1.56061 2.07074 2.26015 2.83868 2.98008 3.23399 3.43130 3.56245 3.65246 3.76598 3.91088 3.96559 4.06817 4.10844 4.18572 4.25961 4.39058 4.41929 4.55891 4.61193 4.74212 4.85136 4.92726 4.97405 5.10426 5.15850 5.22292 5.35875 5.39184 5.40943 5.76685 6.17611 6.38060 7.00909 7.04676 7.11691 8.73054 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020225 B = 0.004143 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1384.115529 B = 6757.272459 C = 7566.877569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.015 3.985 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.278 1.278 6 H -0.260 1.260 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.120 4.120 11 C 0.547 3.453 12 O -0.559 6.559 13 N -0.612 5.612 14 C 0.083 3.917 15 C -0.118 4.118 16 C -0.110 4.110 17 C 0.176 3.824 18 H 0.081 0.919 19 C -0.141 4.141 20 C -0.074 4.074 21 C -0.167 4.167 22 C 0.076 3.924 23 N -0.517 5.517 24 C 0.094 3.906 25 H 0.271 0.729 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.109 0.891 33 H 0.082 0.918 34 H 0.156 0.844 35 H 0.167 0.833 36 H 0.177 0.823 37 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.166 -21.623 -0.305 24.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.190 4.190 3 Si 0.820 3.180 4 H -0.187 1.187 5 H -0.203 1.203 6 H -0.184 1.184 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.271 4.271 11 C 0.335 3.665 12 O -0.437 6.437 13 N -0.347 5.347 14 C -0.038 4.038 15 C -0.156 4.156 16 C -0.148 4.148 17 C 0.072 3.928 18 H 0.099 0.901 19 C -0.144 4.144 20 C -0.101 4.101 21 C -0.186 4.186 22 C -0.081 4.081 23 N -0.226 5.226 24 C -0.063 4.063 25 H 0.080 0.920 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.104 0.896 31 H 0.132 0.868 32 H 0.127 0.873 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.185 0.815 36 H 0.194 0.806 37 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 9.454 -21.366 -1.085 23.389 hybrid contribution 0.924 1.203 0.597 1.630 sum 10.378 -20.163 -0.487 22.682 Atomic orbital electron populations 1.70180 1.08054 1.28723 1.47911 1.26139 0.95946 1.03341 0.93595 0.84999 0.77826 0.75573 0.79574 1.18676 1.20321 1.18439 1.23159 0.95315 0.91901 1.59126 0.89927 1.85590 1.10527 0.99289 1.97027 1.23310 1.03398 0.94211 1.06176 1.19742 0.85546 0.85885 0.75338 1.90689 1.17018 1.85650 1.50309 1.48572 1.08079 1.04709 1.73339 1.22794 0.77566 1.01074 1.02408 1.22833 0.99975 0.91390 1.01353 1.22709 0.90685 0.98034 1.03376 1.20620 0.97469 0.80741 0.93975 0.90092 1.21217 0.98205 0.98468 0.96467 1.21790 0.92722 0.95564 1.00007 1.22471 1.01508 1.01673 0.92950 1.23253 0.92959 0.92199 0.99669 1.67630 1.08218 1.14978 1.31754 1.22461 0.98427 0.97206 0.88220 0.91960 0.88021 0.87424 0.90178 0.89657 0.89583 0.86769 0.87254 0.89961 0.82617 0.81504 0.80628 0.84207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -57.00 13.22 21.65 0.29 -56.71 16 2 C 0.01 0.84 5.49 84.86 0.47 1.31 16 3 Si 1.00 44.05 29.55 68.60 2.03 46.08 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 6 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 7 C -0.55 -31.85 9.50 67.95 0.65 -31.21 16 8 H 0.08 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 10 C -0.12 -5.00 5.16 71.24 0.37 -4.63 16 11 C 0.55 21.41 7.51 87.66 0.66 22.07 16 12 O -0.56 -27.08 15.70 -3.02 -0.05 -27.13 16 13 N -0.61 -16.66 2.34 -791.75 -1.85 -18.51 16 14 C 0.08 1.48 6.70 86.93 0.58 2.07 16 15 C -0.12 -1.25 7.10 32.06 0.23 -1.02 16 16 C -0.11 -1.37 6.46 31.78 0.21 -1.17 16 17 C 0.18 3.92 3.07 44.60 0.14 4.06 16 18 H 0.08 1.87 8.06 -2.38 -0.02 1.85 16 19 C -0.14 -3.66 4.09 -19.77 -0.08 -3.74 16 20 C -0.07 -1.69 9.84 22.47 0.22 -1.46 16 21 C -0.17 -3.50 10.11 22.36 0.23 -3.27 16 22 C 0.08 1.88 11.18 84.69 0.95 2.83 16 23 N -0.52 -16.18 10.36 -195.84 -2.03 -18.21 16 24 C 0.09 2.81 10.33 84.67 0.87 3.68 16 25 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 26 H 0.10 3.93 8.14 -2.39 -0.02 3.91 16 27 H 0.11 4.04 7.85 -2.40 -0.02 4.02 16 28 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.09 1.49 7.48 -2.39 -0.02 1.47 16 30 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.02 7.81 -2.39 -0.02 1.00 16 34 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 35 H 0.17 2.25 8.06 -2.91 -0.02 2.23 16 36 H 0.18 3.25 8.06 -2.91 -0.02 3.23 16 37 H 0.14 4.13 7.69 -2.91 -0.02 4.11 16 Total: -1.00 -82.73 329.49 3.76 -78.97 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.06 Total: 15.85 kcal Atomic # 6 Polarization: -15.97 SS G_CDS: 5.48 Total: -10.49 kcal Atomic # 7 Polarization: -89.84 SS G_CDS: -3.59 Total: -93.44 kcal Atomic # 8 Polarization: -27.08 SS G_CDS: -0.05 Total: -27.13 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -82.73 3.76 -78.97 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372618812.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.108 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds