Wall clock time and date at job start Tue Mar 31 2020 06:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31636 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48504 * 109.46689 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47217 * 299.99342 * 3 2 1 6 6 H 1.48500 * 109.47498 * 59.99947 * 3 2 1 7 7 C 1.38796 * 120.00067 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00210 * 180.02562 * 7 2 1 9 9 S 1.76202 * 119.99832 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00129 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.47333 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99498 * 359.97438 * 11 10 9 13 13 N 1.34776 * 119.99945 * 180.02562 * 11 10 9 14 14 C 1.47741 * 125.82436 * 359.97438 * 13 11 10 15 15 C 1.54903 * 104.84384 * 204.25283 * 14 13 11 16 16 C 1.55163 * 101.58124 * 322.90709 * 15 14 13 17 17 C 1.47021 * 125.64540 * 179.97438 * 13 11 10 18 18 H 1.09007 * 109.87819 * 59.32534 * 17 13 11 19 19 C 1.50690 * 109.88387 * 298.31327 * 17 13 11 20 20 C 1.38682 * 120.41929 * 141.44192 * 19 17 13 21 21 C 1.38625 * 118.41677 * 180.27483 * 20 19 17 22 22 C 1.38221 * 119.16809 * 0.02562 * 21 20 19 23 23 N 1.31860 * 120.76138 * 359.97438 * 22 21 20 24 24 C 1.31881 * 121.72574 * 359.97438 * 23 22 21 25 25 H 0.96998 * 119.99518 * 0.02562 * 1 2 3 26 26 H 1.08999 * 109.47409 * 59.99738 * 10 9 7 27 27 H 1.09003 * 109.46890 * 300.00028 * 10 9 7 28 28 H 1.09000 * 110.43314 * 85.37097 * 14 13 11 29 29 H 1.09002 * 110.38266 * 323.10610 * 14 13 11 30 30 H 1.08995 * 111.00805 * 204.83238 * 15 14 13 31 31 H 1.09008 * 111.04184 * 80.99463 * 15 14 13 32 32 H 1.08996 * 110.71749 * 277.13819 * 16 15 14 33 33 H 1.08998 * 110.72207 * 153.86466 * 16 15 14 34 34 H 1.07993 * 120.78870 * 0.26805 * 20 19 17 35 35 H 1.08004 * 120.41613 * 179.97438 * 21 20 19 36 36 H 1.07994 * 119.62350 * 179.97438 * 22 21 20 37 37 H 1.08003 * 119.62232 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2126 6 1 1.8916 2.3965 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3028 0.0012 12 8 0.7910 -5.5022 0.0021 13 7 2.8441 -6.3432 0.0018 14 6 4.3185 -6.2492 0.0014 15 6 4.8012 -7.5868 -0.6127 16 6 3.7708 -8.5883 -0.0271 17 6 2.4664 -7.7640 0.0030 18 1 1.8656 -7.9886 -0.8784 19 6 1.6855 -8.0858 1.2510 20 6 0.6072 -8.9563 1.1996 21 6 -0.0854 -9.2184 2.3715 22 6 0.3184 -8.6074 3.5437 23 7 1.3489 -7.7848 3.5552 24 6 2.0315 -7.5130 2.4600 25 1 -0.4849 0.8401 -0.0004 26 1 3.1245 -3.7314 0.8905 27 1 3.1244 -3.7313 -0.8895 28 1 4.6932 -6.1419 1.0193 29 1 4.6452 -5.4100 -0.6127 30 1 5.8113 -7.8270 -0.2811 31 1 4.7455 -7.5605 -1.7010 32 1 4.0579 -8.8926 0.9793 33 1 3.6637 -9.4561 -0.6778 34 1 0.3140 -9.4189 0.2689 35 1 -0.9305 -9.8909 2.3684 36 1 -0.2161 -8.8060 4.4608 37 1 2.8703 -6.8343 2.5083 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000372618813.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:05 Heat of formation + Delta-G solvation = 3.551066 kcal Electronic energy + Delta-G solvation = -20685.372584 eV Core-core repulsion = 17553.864474 eV Total energy + Delta-G solvation = -3131.508109 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.71560 -39.23122 -37.18363 -33.01130 -32.42483 -31.81750 -31.62783 -29.02324 -28.00856 -25.49260 -24.02336 -23.56136 -22.40883 -21.20250 -19.18219 -17.73072 -17.23923 -16.90893 -16.38553 -15.69007 -15.33257 -14.80300 -14.76845 -14.35821 -13.97771 -13.87000 -13.44026 -13.41161 -13.09704 -12.99866 -12.56397 -12.46342 -12.23391 -11.80263 -11.51206 -11.32641 -11.07815 -11.05916 -11.00918 -10.75308 -9.81277 -9.78694 -9.47488 -9.43120 -9.06874 -8.95326 -8.54389 -8.22251 -6.49601 -6.21228 -3.91790 1.10920 1.30835 2.87198 3.05143 3.22043 3.26157 3.31491 3.59170 3.83454 4.19995 4.26419 4.37438 4.47354 4.64346 4.82184 4.82990 4.96456 5.02597 5.08824 5.14110 5.18591 5.30259 5.47374 5.48091 5.53278 5.60003 5.65171 5.69290 5.80568 5.91107 5.93295 6.09665 6.13097 6.19966 6.41854 6.70707 7.60105 7.64278 8.01258 8.35877 8.55146 9.24192 10.86333 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020197 B = 0.004145 C = 0.003700 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.999626 B = 6753.718435 C = 7564.862082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.507 6.507 13 N -0.623 5.623 14 C 0.098 3.902 15 C -0.132 4.132 16 C -0.122 4.122 17 C 0.182 3.818 18 H 0.084 0.916 19 C -0.133 4.133 20 C -0.063 4.063 21 C -0.173 4.173 22 C 0.093 3.907 23 N -0.483 5.483 24 C 0.119 3.881 25 H 0.268 0.732 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.132 0.868 35 H 0.133 0.867 36 H 0.153 0.847 37 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.894 -20.372 0.773 22.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.682 4.682 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.380 6.380 13 N -0.361 5.361 14 C -0.025 4.025 15 C -0.170 4.170 16 C -0.160 4.160 17 C 0.078 3.922 18 H 0.102 0.898 19 C -0.136 4.136 20 C -0.090 4.090 21 C -0.193 4.193 22 C -0.064 4.064 23 N -0.191 5.191 24 C -0.039 4.039 25 H 0.078 0.922 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.104 0.896 31 H 0.097 0.903 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.150 0.850 35 H 0.151 0.849 36 H 0.170 0.830 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 7.126 -20.067 1.563 21.352 hybrid contribution 1.600 0.968 -0.796 2.032 sum 8.726 -19.099 0.768 21.012 Atomic orbital electron populations 1.70034 1.05971 1.27340 1.46962 1.24991 0.95014 0.99026 0.94523 0.86117 0.79594 0.81882 0.77910 1.19591 1.20559 1.20546 1.22897 0.94920 0.91588 1.58838 0.90879 1.85426 1.04914 0.96362 1.96696 1.23512 1.06497 0.94893 1.04766 1.20061 0.85740 0.85387 0.75116 1.90720 1.14892 1.84996 1.47405 1.48732 1.06706 1.04664 1.76000 1.22396 0.80171 0.98763 1.01191 1.22790 0.99008 0.94038 1.01131 1.22703 0.93125 0.97819 1.02345 1.20299 0.95373 0.81888 0.94689 0.89796 1.21051 0.97558 0.98382 0.96645 1.21372 0.93200 0.95792 0.98599 1.22073 1.01229 1.02144 0.93815 1.22741 0.93279 0.92445 0.97935 1.67688 1.06914 1.13700 1.30828 1.22457 0.97833 0.96162 0.87427 0.92239 0.89317 0.89291 0.91273 0.89994 0.89639 0.90297 0.90322 0.89767 0.85025 0.84896 0.82974 0.83506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 2 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 3 Si 0.92 21.55 29.55 -169.99 -5.02 16.53 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 6 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.53 -15.36 9.50 30.94 0.29 -15.06 16 8 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 9 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -3.02 5.18 36.01 0.19 -2.84 16 11 C 0.55 10.59 7.51 -10.98 -0.08 10.51 16 12 O -0.51 -11.84 15.70 5.56 0.09 -11.75 16 13 N -0.62 -8.75 2.35 -164.07 -0.38 -9.14 16 14 C 0.10 0.98 6.71 -2.36 -0.02 0.96 16 15 C -0.13 -0.94 7.09 -24.58 -0.17 -1.11 16 16 C -0.12 -0.95 6.47 -24.89 -0.16 -1.11 16 17 C 0.18 2.16 3.06 -68.11 -0.21 1.95 16 18 H 0.08 1.03 8.05 -51.93 -0.42 0.61 16 19 C -0.13 -1.77 4.10 -104.48 -0.43 -2.20 16 20 C -0.06 -0.76 9.83 -39.27 -0.39 -1.14 16 21 C -0.17 -1.95 10.11 -39.44 -0.40 -2.35 16 22 C 0.09 1.18 11.18 -17.55 -0.20 0.98 16 23 N -0.48 -7.44 10.36 -13.25 -0.14 -7.58 16 24 C 0.12 1.75 10.33 -17.55 -0.18 1.57 16 25 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 27 H 0.09 1.69 7.86 -51.91 -0.41 1.28 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.08 0.81 7.50 -51.93 -0.39 0.42 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.08 0.60 7.82 -51.93 -0.41 0.20 16 33 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 35 H 0.13 1.09 8.06 -52.48 -0.42 0.66 16 36 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.15 2.10 7.69 -52.48 -0.40 1.69 16 LS Contribution 329.56 15.07 4.97 4.97 Total: -1.00 -36.17 329.56 -8.77 -44.94 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -4.95 Total: -0.55 kcal Atomic # 6 Polarization: -5.97 SS G_CDS: -1.85 Total: -7.81 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: 0.21 Total: -42.43 kcal Atomic # 8 Polarization: -11.84 SS G_CDS: 0.09 Total: -11.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -36.17 -8.77 -44.94 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000372618813.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.487 kcal (2) G-P(sol) polarization free energy of solvation -36.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds