Wall clock time and date at job start Tue Mar 31 2020 06:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 119.99749 * 2 1 4 4 H 1.48503 * 109.46828 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47171 * 299.99597 * 3 2 1 6 6 H 1.48501 * 109.47022 * 60.00157 * 3 2 1 7 7 C 1.37879 * 120.00078 * 179.97438 * 2 1 3 8 8 H 1.07990 * 119.99775 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99737 * 359.97438 * 7 2 1 10 10 N 1.46902 * 109.46700 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99948 * 190.00155 * 10 9 7 12 12 C 1.52999 * 109.47137 * 75.43619 * 11 10 9 13 13 C 1.50692 * 109.47169 * 174.82007 * 12 11 10 14 14 C 1.33638 * 126.04090 * 89.71322 * 13 12 11 15 15 N 1.31780 * 114.50356 * 179.78482 * 14 13 12 16 16 C 1.29021 * 117.12175 * 0.53079 * 15 14 13 17 17 S 1.70978 * 110.17006 * 359.70624 * 16 15 14 18 18 C 1.46908 * 110.99598 * 66.05043 * 10 9 7 19 19 C 1.50702 * 109.46811 * 199.71190 * 18 10 9 20 20 C 1.34518 * 125.78428 * 84.72039 * 19 18 10 21 21 C 1.41389 * 106.83642 * 179.88807 * 20 19 18 22 22 C 1.34510 * 106.84171 * 0.37083 * 21 20 19 23 23 O 1.34297 * 125.79067 * 265.02504 * 19 18 10 24 24 H 0.96997 * 120.00276 * 0.02562 * 1 2 3 25 25 H 1.08998 * 109.46672 * 60.00778 * 9 7 2 26 26 H 1.08998 * 109.47186 * 299.99937 * 9 7 2 27 27 H 1.08998 * 109.46771 * 195.43658 * 11 10 9 28 28 H 1.09001 * 109.46685 * 315.43250 * 11 10 9 29 29 H 1.08998 * 109.46884 * 294.82549 * 12 11 10 30 30 H 1.09002 * 109.46579 * 54.81691 * 12 11 10 31 31 H 1.08004 * 122.74665 * 359.97438 * 14 13 12 32 32 H 1.08005 * 124.91786 * 179.67443 * 16 15 14 33 33 H 1.09000 * 109.47008 * 319.71259 * 18 10 9 34 34 H 1.08995 * 109.46884 * 79.71425 * 18 10 9 35 35 H 1.07997 * 126.58301 * 0.02842 * 20 19 18 36 36 H 1.07992 * 126.57738 * 180.16690 * 21 20 19 37 37 H 1.07998 * 125.79323 * 179.75044 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0017 10 7 2.2057 -3.6157 0.0015 11 6 1.5211 -4.8936 -0.2356 12 6 1.1493 -5.0061 -1.7155 13 6 0.5622 -6.3678 -1.9838 14 6 -0.7302 -6.6974 -1.8997 15 7 -0.9932 -7.9559 -2.1886 16 6 0.0067 -8.7090 -2.5014 17 16 1.4595 -7.8087 -2.4563 18 6 2.9719 -3.6534 1.2543 19 6 4.2299 -4.4575 1.0497 20 6 5.3891 -3.9913 0.5512 21 6 6.2948 -5.0769 0.5369 22 6 5.6324 -6.1434 1.0197 23 8 4.3821 -5.7623 1.3288 24 1 -0.4850 0.8400 -0.0004 25 1 0.6242 -2.5574 -0.8881 26 1 0.6247 -2.5563 0.8919 27 1 2.1827 -5.7161 0.0364 28 1 0.6165 -4.9391 0.3709 29 1 0.4165 -4.2388 -1.9653 30 1 2.0419 -4.8685 -2.3258 31 1 -1.4967 -5.9894 -1.6210 32 1 -0.0638 -9.7566 -2.7546 33 1 3.2340 -2.6377 1.5506 34 1 2.3684 -4.1155 2.0355 35 1 5.5901 -2.9811 0.2266 36 1 7.3205 -5.0549 0.1996 37 1 6.0371 -7.1377 1.1385 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411307590.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:20:41 Heat of formation + Delta-G solvation = 44.890129 kcal Electronic energy + Delta-G solvation = -20563.106133 eV Core-core repulsion = 17433.390619 eV Total energy + Delta-G solvation = -3129.715513 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 292.099 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.36444 -40.61385 -38.75153 -34.95625 -34.24580 -33.67407 -31.43878 -29.82346 -28.37856 -26.61114 -25.57329 -24.12234 -22.59946 -22.08128 -21.11224 -20.92227 -18.99394 -18.58366 -18.14712 -17.23138 -16.67182 -16.57884 -15.96457 -15.86737 -15.38293 -15.23810 -14.99776 -14.74459 -14.22993 -13.90507 -13.65369 -13.57451 -13.36507 -13.27369 -13.00410 -12.78562 -12.67069 -12.48190 -12.40096 -12.03301 -11.66611 -11.28233 -10.73279 -10.62364 -10.59426 -10.20322 -9.88098 -9.32254 -9.12047 -8.19010 -6.27910 -0.23708 0.41917 0.81307 0.89782 1.42436 1.44318 1.56433 1.81428 1.85531 2.18415 2.41978 3.14709 3.23479 3.50050 3.84625 3.93730 4.13705 4.14898 4.25373 4.30651 4.36231 4.46351 4.55450 4.58143 4.71877 4.96824 5.00508 5.05625 5.15569 5.19002 5.22282 5.23348 5.32767 5.66355 5.73371 6.03278 6.21303 6.33600 6.54111 6.72779 6.87401 7.41703 8.92160 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.011554 B = 0.005295 C = 0.003829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.810804 B = 5287.210406 C = 7310.277433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.007 3.993 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.521 4.521 8 H 0.066 0.934 9 C 0.208 3.792 10 N -0.533 5.533 11 C 0.069 3.931 12 C -0.027 4.027 13 C -0.217 4.217 14 C 0.016 3.984 15 N -0.500 5.500 16 C 0.016 3.984 17 S 0.154 5.846 18 C 0.142 3.858 19 C -0.013 4.013 20 C -0.207 4.207 21 C -0.222 4.222 22 C -0.043 4.043 23 O -0.194 6.194 24 H 0.264 0.736 25 H 0.019 0.981 26 H -0.033 1.033 27 H 0.071 0.929 28 H 0.023 0.977 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.172 0.828 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.039 0.961 35 H 0.140 0.860 36 H 0.170 0.830 37 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.441 -16.740 -2.191 18.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.191 4.191 3 Si 0.788 3.212 4 H -0.186 1.186 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.559 4.559 8 H 0.084 0.916 9 C 0.083 3.917 10 N -0.258 5.258 11 C -0.060 4.060 12 C -0.067 4.067 13 C -0.338 4.338 14 C -0.134 4.134 15 N -0.213 5.213 16 C -0.281 4.281 17 S 0.406 5.594 18 C 0.014 3.986 19 C -0.063 4.063 20 C -0.227 4.227 21 C -0.241 4.241 22 C -0.110 4.110 23 O -0.091 6.091 24 H 0.073 0.927 25 H 0.037 0.963 26 H -0.015 1.015 27 H 0.090 0.910 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.189 0.811 32 H 0.250 0.750 33 H 0.119 0.881 34 H 0.057 0.943 35 H 0.158 0.842 36 H 0.187 0.813 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 8.869 -17.243 -2.647 19.570 hybrid contribution -1.199 1.767 0.809 2.283 sum 7.671 -15.476 -1.838 17.370 Atomic orbital electron populations 1.70076 1.07629 1.27769 1.51794 1.25805 0.95592 1.02847 0.94877 0.85431 0.79184 0.79078 0.77538 1.18620 1.20705 1.20668 1.21468 0.93703 0.90823 1.49900 0.91631 1.19460 0.89856 0.88089 0.94331 1.61977 1.27131 1.03202 1.33445 1.22014 0.96620 0.92016 0.95350 1.19825 1.00783 0.89673 0.96416 1.25983 0.97122 1.01061 1.09681 1.21877 0.95451 0.92865 1.03245 1.66355 1.34958 1.04676 1.15336 1.28991 0.90397 1.05894 1.02799 1.83873 1.12859 1.00497 1.62184 1.20331 0.89057 0.98165 0.91037 1.22351 0.97805 0.81858 1.04331 1.21746 0.93713 1.01506 1.05763 1.22103 1.02147 0.92521 1.07330 1.24776 0.81470 1.01753 1.02988 1.83996 1.32788 1.25226 1.67120 0.92747 0.96340 1.01531 0.91046 0.95852 0.90847 0.90064 0.81084 0.74950 0.88116 0.94304 0.84217 0.81288 0.74301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.54 13.29 21.45 0.28 -54.26 16 2 C 0.01 0.40 5.46 84.65 0.46 0.86 16 3 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 4 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 5 H -0.28 -12.43 7.11 99.48 0.71 -11.73 16 6 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.52 -28.15 8.23 25.60 0.21 -27.93 16 8 H 0.07 3.48 7.31 -2.92 -0.02 3.45 16 9 C 0.21 10.55 4.55 85.56 0.39 10.94 16 10 N -0.53 -22.33 4.35 -905.34 -3.94 -26.26 16 11 C 0.07 2.49 4.79 86.30 0.41 2.90 16 12 C -0.03 -0.88 5.78 29.85 0.17 -0.71 16 13 C -0.22 -6.19 5.85 24.64 0.14 -6.04 16 14 C 0.02 0.46 11.25 83.66 0.94 1.40 16 15 N -0.50 -13.68 10.54 -203.74 -2.15 -15.82 16 16 C 0.02 0.33 12.23 130.66 1.60 1.93 16 17 S 0.15 3.31 23.22 -56.49 -1.31 2.00 16 18 C 0.14 5.51 5.33 85.56 0.46 5.96 16 19 C -0.01 -0.46 6.16 24.83 0.15 -0.31 16 20 C -0.21 -6.66 10.81 22.19 0.24 -6.42 16 21 C -0.22 -5.52 10.91 22.19 0.24 -5.28 16 22 C -0.04 -0.98 12.09 66.97 0.81 -0.17 16 23 O -0.19 -5.94 10.18 -2.52 -0.03 -5.97 16 24 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.02 1.00 6.70 -2.39 -0.02 0.99 16 26 H -0.03 -1.83 8.12 -2.39 -0.02 -1.84 16 27 H 0.07 2.45 6.91 -2.39 -0.02 2.43 16 28 H 0.02 0.88 8.00 -2.39 -0.02 0.86 16 29 H 0.07 2.67 6.94 -2.39 -0.02 2.65 16 30 H 0.08 2.69 8.14 -2.39 -0.02 2.67 16 31 H 0.17 4.89 8.06 -2.91 -0.02 4.87 16 32 H 0.23 2.64 8.06 -2.91 -0.02 2.62 16 33 H 0.10 4.21 6.57 -2.39 -0.02 4.19 16 34 H 0.04 1.47 8.00 -2.39 -0.02 1.45 16 35 H 0.14 4.59 8.06 -2.91 -0.02 4.56 16 36 H 0.17 3.16 8.06 -2.91 -0.02 3.13 16 37 H 0.24 2.96 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -65.35 331.17 2.19 -63.16 By element: Atomic # 1 Polarization: 13.77 SS G_CDS: 1.07 Total: 14.84 kcal Atomic # 6 Polarization: -29.11 SS G_CDS: 6.23 Total: -22.88 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -5.80 Total: -96.35 kcal Atomic # 8 Polarization: -5.94 SS G_CDS: -0.03 Total: -5.97 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.31 Total: 2.00 kcal Total: -65.35 2.19 -63.16 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411307590.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.054 kcal (2) G-P(sol) polarization free energy of solvation -65.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.164 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds