Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46947 * 2 1 4 4 C 1.37095 * 120.00014 * 264.74574 * 3 2 1 5 5 H 1.08005 * 120.00161 * 146.16580 * 4 3 2 6 6 C 1.38957 * 120.00284 * 326.16791 * 4 3 2 7 7 N 1.31406 * 119.99484 * 337.68320 * 6 4 3 8 8 Si 1.86792 * 120.00273 * 157.68485 * 6 4 3 9 9 H 1.48496 * 109.47221 * 89.99843 * 8 6 4 10 10 H 1.48496 * 109.47182 * 210.00087 * 8 6 4 11 11 H 1.48504 * 109.46996 * 330.00352 * 8 6 4 12 12 C 1.34781 * 120.00045 * 84.74744 * 3 2 1 13 13 O 1.21289 * 119.99667 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99767 * 359.97438 * 12 3 2 15 15 C 1.50697 * 109.46952 * 179.97438 * 14 12 3 16 16 N 1.29744 * 126.29328 * 269.96322 * 15 14 12 17 17 O 1.41351 * 109.74070 * 180.02562 * 16 15 14 18 18 C 1.34896 * 109.32630 * 359.97438 * 17 16 15 19 19 C 1.38959 * 133.33423 * 179.97438 * 18 17 16 20 20 C 1.37758 * 119.97395 * 180.02562 * 19 18 17 21 21 C 1.38993 * 120.57795 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.83693 * 180.02562 * 21 20 19 23 23 C 1.37793 * 120.32256 * 359.97438 * 21 20 19 24 24 C 1.39724 * 119.65749 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47307 * 60.00085 * 1 2 3 26 26 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47073 * 299.99468 * 1 2 3 28 28 H 1.09004 * 109.47136 * 239.99799 * 2 1 3 29 29 H 1.09006 * 109.47125 * 119.99962 * 2 1 3 30 30 H 0.97000 * 119.99826 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47268 * 60.00387 * 14 12 3 32 32 H 1.09000 * 109.47054 * 299.99728 * 14 12 3 33 33 H 1.08000 * 120.00816 * 359.75641 * 19 18 17 34 34 H 1.07998 * 119.70961 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.17705 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9007 1.2466 -2.2179 7 7 3.5051 0.1088 -1.9594 8 14 2.7826 1.8630 -3.9772 9 1 3.9648 2.7067 -4.2865 10 1 2.7444 0.7049 -4.9059 11 1 1.5448 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3817 2.4619 15 6 2.0060 2.3397 3.6026 16 7 3.1037 2.4796 4.2800 17 8 2.9308 3.4746 5.2690 18 6 1.6764 3.9651 5.1944 19 6 0.9881 4.9366 5.9109 20 6 -0.3210 5.2267 5.5948 21 6 -0.9647 4.5548 4.5623 22 9 -2.2486 4.8516 4.2647 23 6 -0.2993 3.5882 3.8400 24 6 1.0287 3.2846 4.1507 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8897 -0.4112 -2.6823 31 1 2.3992 0.4971 2.6011 32 1 0.7283 1.0885 2.4377 33 1 1.4779 5.4608 6.7181 34 1 -0.8520 5.9822 6.1548 35 1 -0.8016 3.0678 3.0380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415071577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = -9.151722 kcal Electronic energy + Delta-G solvation = -22909.433508 eV Core-core repulsion = 19211.161389 eV Total energy + Delta-G solvation = -3698.272120 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.97419 -41.71332 -38.72272 -37.48345 -35.27612 -34.22294 -32.17196 -30.80005 -29.77033 -29.58491 -29.03980 -24.95837 -23.68273 -22.73733 -22.44216 -20.92894 -18.91705 -18.23362 -17.22248 -16.95882 -16.61346 -16.31175 -15.81881 -15.39203 -15.24847 -14.91337 -14.52292 -14.22978 -14.02674 -13.62223 -13.15281 -13.00383 -12.84210 -12.78123 -12.26361 -11.92444 -11.86081 -11.56812 -11.43495 -11.18667 -11.10222 -11.06145 -10.82487 -10.43166 -10.40026 -10.17631 -9.13340 -9.03789 -8.61442 -8.47946 -7.60921 -6.42315 -4.03378 0.48313 0.97876 2.08212 2.56951 3.11981 3.22072 3.26699 3.30672 3.71155 3.90588 4.03477 4.14907 4.32537 4.44292 4.71927 4.77047 4.94396 5.05550 5.22518 5.37032 5.51292 5.56750 5.64472 5.75101 5.82671 5.82973 5.89471 6.05456 6.11502 6.23072 6.40555 6.49871 6.78846 7.16617 7.31883 7.51914 8.11888 8.38910 9.06712 9.28502 9.85475 10.61413 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.004326 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.413554 B = 6470.448877 C = 6880.567296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.090 3.910 3 N -0.432 5.432 4 C -0.309 4.309 5 H 0.094 0.906 6 C 0.037 3.963 7 N -0.866 5.866 8 Si 0.919 3.081 9 H -0.276 1.276 10 H -0.282 1.282 11 H -0.269 1.269 12 C 0.459 3.541 13 O -0.574 6.574 14 C -0.076 4.076 15 C 0.173 3.827 16 N -0.272 5.272 17 O -0.094 6.094 18 C 0.075 3.925 19 C -0.098 4.098 20 C -0.098 4.098 21 C 0.065 3.935 22 F -0.136 7.136 23 C -0.067 4.067 24 C -0.152 4.152 25 H 0.059 0.941 26 H 0.053 0.947 27 H 0.041 0.959 28 H 0.117 0.883 29 H 0.049 0.951 30 H 0.269 0.731 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.148 0.852 34 H 0.150 0.850 35 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.550 1.741 11.844 15.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 N -0.151 5.151 4 C -0.436 4.436 5 H 0.111 0.889 6 C -0.167 4.167 7 N -0.504 5.504 8 Si 0.745 3.255 9 H -0.202 1.202 10 H -0.207 1.207 11 H -0.193 1.193 12 C 0.245 3.755 13 O -0.457 6.457 14 C -0.118 4.118 15 C -0.009 4.009 16 N -0.015 5.015 17 O -0.103 6.103 18 C 0.021 3.979 19 C -0.118 4.118 20 C -0.118 4.118 21 C 0.046 3.954 22 F -0.115 7.115 23 C -0.088 4.088 24 C -0.156 4.156 25 H 0.078 0.922 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.134 0.866 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.130 0.870 32 H 0.127 0.873 33 H 0.165 0.835 34 H 0.168 0.832 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.982 1.815 11.971 14.502 hybrid contribution -0.915 0.336 -1.090 1.463 sum -8.897 2.151 10.880 14.219 Atomic orbital electron populations 1.22219 0.97972 1.00604 1.01548 1.21691 0.91895 0.85315 1.04514 1.43484 1.55198 1.11865 1.04527 1.19461 1.40195 0.95596 0.88369 0.88858 1.25346 0.94282 0.96432 1.00651 1.69913 1.32169 1.15202 1.33124 0.86060 0.79162 0.78424 0.81864 1.20218 1.20706 1.19314 1.19752 0.83591 0.88209 0.83911 1.90584 1.50211 1.18519 1.86403 1.20466 1.04644 0.96706 0.89947 1.23998 0.89326 0.93497 0.94050 1.79941 1.17722 1.03197 1.00662 1.89174 1.25509 1.47050 1.48526 1.20287 0.86385 0.95569 0.95676 1.19768 0.93233 0.97415 1.01385 1.21007 0.94241 0.99877 0.96711 1.17240 0.80177 0.99362 0.98661 1.91514 1.34638 1.92497 1.92809 1.20607 0.92683 0.96506 0.99000 1.20426 0.95885 1.00386 0.98882 0.92202 0.92806 0.94031 0.86557 0.93223 0.92053 0.87038 0.87276 0.83453 0.83219 0.83545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 10.15 37.16 0.38 -2.30 16 2 C 0.09 1.81 5.43 -4.04 -0.02 1.79 16 3 N -0.43 -10.43 2.56 -114.81 -0.29 -10.72 16 4 C -0.31 -8.29 8.98 -14.93 -0.13 -8.43 16 5 H 0.09 2.65 7.70 -52.48 -0.40 2.24 16 6 C 0.04 0.96 4.92 -17.47 -0.09 0.87 16 7 N -0.87 -22.56 11.33 55.50 0.63 -21.93 16 8 Si 0.92 20.04 29.61 -169.99 -5.03 15.01 16 9 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 10 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 11 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 12 C 0.46 10.83 7.59 -10.98 -0.08 10.75 16 13 O -0.57 -15.92 15.86 5.55 0.09 -15.83 16 14 C -0.08 -1.36 4.91 -29.04 -0.14 -1.50 16 15 C 0.17 3.19 5.96 -80.12 -0.48 2.72 16 16 N -0.27 -5.35 12.81 34.91 0.45 -4.91 16 17 O -0.09 -1.68 12.07 7.47 0.09 -1.59 16 18 C 0.08 1.16 7.48 -38.49 -0.29 0.88 16 19 C -0.10 -1.11 10.06 -39.49 -0.40 -1.51 16 20 C -0.10 -1.01 9.99 -39.48 -0.39 -1.41 16 21 C 0.07 0.81 7.28 -39.46 -0.29 0.52 16 22 F -0.14 -1.69 17.26 2.25 0.04 -1.65 16 23 C -0.07 -0.94 10.08 -39.19 -0.39 -1.34 16 24 C -0.15 -2.49 6.32 -105.16 -0.66 -3.15 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 26 H 0.05 0.73 8.14 -51.92 -0.42 0.30 16 27 H 0.04 0.60 6.59 -51.93 -0.34 0.26 16 28 H 0.12 2.63 5.34 -51.93 -0.28 2.35 16 29 H 0.05 0.89 6.66 -51.93 -0.35 0.54 16 30 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.11 1.82 7.41 -51.93 -0.38 1.44 16 32 H 0.11 1.55 6.53 -51.93 -0.34 1.21 16 33 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.15 1.04 8.06 -52.49 -0.42 0.61 16 35 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 310.96 15.07 4.69 4.69 Total: -1.00 -31.98 310.96 -5.68 -37.67 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: -3.34 Total: 1.39 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: -2.99 Total: -2.13 kcal Atomic # 7 Polarization: -38.34 SS G_CDS: 0.78 Total: -37.56 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.18 Total: -17.42 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.04 Total: -1.65 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -5.03 Total: 15.01 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.98 -5.68 -37.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415071577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.518 kcal (2) G-P(sol) polarization free energy of solvation -31.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds