Wall clock time and date at job start Tue Mar 31 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.46947 * 2 1 4 4 C 1.37095 * 120.00014 * 264.74574 * 3 2 1 5 5 H 1.08005 * 120.00161 * 146.16580 * 4 3 2 6 6 C 1.38957 * 120.00284 * 326.16791 * 4 3 2 7 7 N 1.31406 * 119.99484 * 337.68320 * 6 4 3 8 8 Si 1.86792 * 120.00273 * 157.68485 * 6 4 3 9 9 H 1.48496 * 109.47221 * 89.99843 * 8 6 4 10 10 H 1.48496 * 109.47182 * 210.00087 * 8 6 4 11 11 H 1.48504 * 109.46996 * 330.00352 * 8 6 4 12 12 C 1.34781 * 120.00045 * 84.74744 * 3 2 1 13 13 O 1.21289 * 119.99667 * 179.97438 * 12 3 2 14 14 C 1.50703 * 119.99767 * 359.97438 * 12 3 2 15 15 C 1.50697 * 109.46952 * 179.97438 * 14 12 3 16 16 N 1.29744 * 126.29328 * 269.96322 * 15 14 12 17 17 O 1.41351 * 109.74070 * 180.02562 * 16 15 14 18 18 C 1.34896 * 109.32630 * 359.97438 * 17 16 15 19 19 C 1.38959 * 133.33423 * 179.97438 * 18 17 16 20 20 C 1.37758 * 119.97395 * 180.02562 * 19 18 17 21 21 C 1.38993 * 120.57795 * 0.02562 * 20 19 18 22 22 F 1.35099 * 119.83693 * 180.02562 * 21 20 19 23 23 C 1.37793 * 120.32256 * 359.97438 * 21 20 19 24 24 C 1.39724 * 119.65749 * 0.02562 * 23 21 20 25 25 H 1.08996 * 109.47307 * 60.00085 * 1 2 3 26 26 H 1.09007 * 109.47175 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47073 * 299.99468 * 1 2 3 28 28 H 1.09004 * 109.47136 * 239.99799 * 2 1 3 29 29 H 1.09006 * 109.47125 * 119.99962 * 2 1 3 30 30 H 0.97000 * 119.99826 * 179.97438 * 7 6 4 31 31 H 1.09002 * 109.47268 * 60.00387 * 14 12 3 32 32 H 1.09000 * 109.47054 * 299.99728 * 14 12 3 33 33 H 1.08000 * 120.00816 * 359.75641 * 19 18 17 34 34 H 1.07998 * 119.70961 * 179.97438 * 20 19 18 35 35 H 1.07998 * 120.17705 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3493 1.9912 -1.1823 5 1 2.1814 3.0506 -1.3089 6 6 2.9007 1.2466 -2.2179 7 7 3.5051 0.1088 -1.9594 8 14 2.7826 1.8630 -3.9772 9 1 3.9648 2.7067 -4.2865 10 1 2.7444 0.7049 -4.9059 11 1 1.5448 2.6675 -4.1379 12 6 2.1422 2.0522 1.1623 13 8 2.5469 3.1956 1.1623 14 6 1.7778 1.3817 2.4619 15 6 2.0060 2.3397 3.6026 16 7 3.1037 2.4796 4.2800 17 8 2.9308 3.4746 5.2690 18 6 1.6764 3.9651 5.1944 19 6 0.9881 4.9366 5.9109 20 6 -0.3210 5.2267 5.5948 21 6 -0.9647 4.5548 4.5623 22 9 -2.2486 4.8516 4.2647 23 6 -0.2993 3.5882 3.8400 24 6 1.0287 3.2846 4.1507 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8897 -0.4112 -2.6823 31 1 2.3992 0.4971 2.6011 32 1 0.7283 1.0885 2.4377 33 1 1.4779 5.4608 6.7181 34 1 -0.8520 5.9822 6.1548 35 1 -0.8016 3.0678 3.0380 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415071577.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:58:39 Heat of formation + Delta-G solvation = -28.883126 kcal Electronic energy + Delta-G solvation = -22910.289126 eV Core-core repulsion = 19211.161389 eV Total energy + Delta-G solvation = -3699.127737 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.95579 -42.92814 -40.51693 -38.54098 -37.07394 -35.63857 -34.05609 -31.85293 -31.22951 -30.93614 -30.43672 -26.84623 -24.74048 -24.00931 -23.81583 -22.39454 -20.50751 -19.32580 -18.82259 -18.39884 -17.98023 -17.59796 -17.19160 -16.87950 -16.47757 -16.32074 -16.03526 -15.74493 -15.28195 -14.68577 -14.58772 -14.58048 -14.18544 -14.02059 -13.74632 -13.57611 -13.16682 -12.96677 -12.88255 -12.67793 -12.65665 -12.34448 -12.19748 -12.17582 -12.05545 -11.78585 -10.92365 -10.51407 -10.16940 -9.56984 -9.51633 -8.37833 -6.07047 -0.59398 -0.06333 0.82490 1.35536 1.37206 1.42111 1.54187 1.92890 2.23990 2.31093 2.74340 2.93490 2.99663 3.10534 3.24036 3.40846 3.82850 3.88730 4.00196 4.15020 4.18290 4.28306 4.35925 4.56203 4.64890 4.76690 4.83466 4.88062 4.89986 4.96311 5.07290 5.35034 5.45125 5.51950 5.59653 6.07328 6.16375 6.47549 7.12620 7.40322 7.97688 8.64274 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.020868 B = 0.004326 C = 0.004068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.413554 B = 6470.448877 C = 6880.567296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.085 3.915 3 N -0.442 5.442 4 C -0.343 4.343 5 H 0.064 0.936 6 C 0.007 3.993 7 N -0.884 5.884 8 Si 0.980 3.020 9 H -0.282 1.282 10 H -0.265 1.265 11 H -0.266 1.266 12 C 0.449 3.551 13 O -0.628 6.628 14 C -0.063 4.063 15 C 0.162 3.838 16 N -0.312 5.312 17 O -0.104 6.104 18 C 0.052 3.948 19 C -0.087 4.087 20 C -0.077 4.077 21 C 0.067 3.933 22 F -0.134 7.134 23 C -0.082 4.082 24 C -0.176 4.176 25 H 0.041 0.959 26 H 0.087 0.913 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.071 0.929 30 H 0.275 0.725 31 H 0.125 0.875 32 H 0.147 0.853 33 H 0.185 0.815 34 H 0.195 0.805 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.569 1.926 12.931 17.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.037 4.037 3 N -0.160 5.160 4 C -0.471 4.471 5 H 0.082 0.918 6 C -0.196 4.196 7 N -0.521 5.521 8 Si 0.803 3.197 9 H -0.208 1.208 10 H -0.189 1.189 11 H -0.191 1.191 12 C 0.237 3.763 13 O -0.515 6.515 14 C -0.103 4.103 15 C -0.019 4.019 16 N -0.055 5.055 17 O -0.114 6.114 18 C -0.002 4.002 19 C -0.106 4.106 20 C -0.096 4.096 21 C 0.048 3.952 22 F -0.112 7.112 23 C -0.102 4.102 24 C -0.180 4.180 25 H 0.060 0.940 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.143 0.857 32 H 0.165 0.835 33 H 0.202 0.798 34 H 0.212 0.788 35 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -10.025 1.948 13.053 16.574 hybrid contribution -0.334 0.350 -1.364 1.447 sum -10.359 2.298 11.689 15.787 Atomic orbital electron populations 1.22123 0.94747 1.02830 1.01632 1.21852 0.94554 0.83014 1.04328 1.43754 1.55023 1.13180 1.04085 1.19378 1.42232 0.94927 0.90527 0.91812 1.26036 0.93353 0.96507 1.03722 1.69976 1.31997 1.15808 1.34363 0.85162 0.78738 0.78292 0.77514 1.20759 1.18917 1.19076 1.20560 0.82527 0.87679 0.85525 1.90537 1.52481 1.20974 1.87492 1.20368 1.07090 0.96320 0.86548 1.24169 0.89889 0.93924 0.93906 1.79831 1.18917 1.04776 1.01984 1.89091 1.27096 1.47019 1.48222 1.20887 0.85634 0.96960 0.96715 1.20292 0.93311 0.95783 1.01250 1.21504 0.93574 0.99246 0.95312 1.17419 0.80164 0.98862 0.98759 1.91527 1.34512 1.92360 1.92847 1.20728 0.92094 0.97577 0.99832 1.20482 0.96713 1.00951 0.99805 0.93969 0.89420 0.92114 0.89021 0.91029 0.91488 0.85669 0.83516 0.79814 0.78756 0.82958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.76 10.15 71.98 0.73 -4.03 16 2 C 0.09 3.39 5.43 86.38 0.47 3.86 16 3 N -0.44 -21.83 2.56 -635.52 -1.63 -23.45 16 4 C -0.34 -19.09 8.98 84.04 0.75 -18.34 16 5 H 0.06 3.84 7.70 -2.91 -0.02 3.82 16 6 C 0.01 0.36 4.92 84.93 0.42 0.78 16 7 N -0.88 -46.44 11.33 21.66 0.25 -46.19 16 8 Si 0.98 41.54 29.61 68.60 2.03 43.57 16 9 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 11 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 12 C 0.45 21.75 7.59 87.66 0.66 22.41 16 13 O -0.63 -36.50 15.86 -3.06 -0.05 -36.55 16 14 C -0.06 -2.22 4.91 29.10 0.14 -2.08 16 15 C 0.16 6.07 5.96 45.04 0.27 6.34 16 16 N -0.31 -12.67 12.81 -43.47 -0.56 -13.23 16 17 O -0.10 -3.78 12.07 29.11 0.35 -3.43 16 18 C 0.05 1.56 7.48 22.97 0.17 1.73 16 19 C -0.09 -1.70 10.06 22.33 0.22 -1.48 16 20 C -0.08 -1.27 9.99 22.34 0.22 -1.05 16 21 C 0.07 1.50 7.28 22.35 0.16 1.66 16 22 F -0.13 -2.94 17.26 44.97 0.78 -2.17 16 23 C -0.08 -2.20 10.08 22.52 0.23 -1.97 16 24 C -0.18 -5.71 6.32 -20.21 -0.13 -5.84 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 27 H 0.06 1.61 6.59 -2.39 -0.02 1.59 16 28 H 0.09 4.15 5.34 -2.38 -0.01 4.14 16 29 H 0.07 2.47 6.66 -2.38 -0.02 2.46 16 30 H 0.28 13.47 8.31 -92.71 -0.77 12.70 16 31 H 0.13 4.03 7.41 -2.39 -0.02 4.01 16 32 H 0.15 3.93 6.53 -2.39 -0.02 3.92 16 33 H 0.18 2.20 8.06 -2.91 -0.02 2.18 16 34 H 0.20 1.51 8.06 -2.91 -0.02 1.49 16 35 H 0.15 3.75 8.06 -2.91 -0.02 3.72 16 Total: -1.00 -74.13 310.96 6.64 -67.48 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: 1.14 Total: 11.96 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: 4.33 Total: 2.01 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -1.94 Total: -82.87 kcal Atomic # 8 Polarization: -40.27 SS G_CDS: 0.30 Total: -39.97 kcal Atomic # 9 Polarization: -2.94 SS G_CDS: 0.78 Total: -2.17 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Total: -74.13 6.64 -67.48 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415071577.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.600 kcal (2) G-P(sol) polarization free energy of solvation -74.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds