Wall clock time and date at job start Tue Mar 31 2020 06:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47536 * 2 1 4 4 C 1.50705 * 109.46997 * 240.00079 * 2 1 3 5 5 H 1.07997 * 120.00508 * 240.00408 * 4 2 1 6 6 C 1.37883 * 119.99633 * 59.99838 * 4 2 1 7 7 N 1.31515 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99703 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46867 * 60.00433 * 8 6 4 10 10 H 1.48500 * 109.46809 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47265 * 300.00197 * 8 6 4 12 12 N 1.46507 * 109.47191 * 120.00606 * 2 1 3 13 13 C 1.34774 * 119.99835 * 274.99418 * 12 2 1 14 14 O 1.21284 * 119.99712 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99935 * 179.97438 * 13 12 2 16 16 C 1.50706 * 109.47098 * 180.02562 * 15 13 12 17 17 N 1.29743 * 126.28979 * 270.04373 * 16 15 13 18 18 O 1.41340 * 109.73744 * 179.97438 * 17 16 15 19 19 C 1.34891 * 109.33072 * 359.97438 * 18 17 16 20 20 C 1.38963 * 133.33485 * 179.97438 * 19 18 17 21 21 C 1.37752 * 119.97064 * 180.30865 * 20 19 18 22 22 C 1.39005 * 120.58313 * 359.43878 * 21 20 19 23 23 F 1.35095 * 119.84393 * 180.30849 * 22 21 20 24 24 C 1.37793 * 120.31392 * 0.56139 * 22 21 20 25 25 C 1.39728 * 119.65986 * 359.72226 * 24 22 21 26 26 H 1.09002 * 109.46991 * 59.99594 * 1 2 3 27 27 H 1.08998 * 109.47536 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46843 * 299.99448 * 1 2 3 29 29 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 30 30 H 0.96998 * 119.99535 * 94.99853 * 12 2 1 31 31 H 1.08998 * 109.47084 * 60.00606 * 15 13 12 32 32 H 1.09001 * 109.47289 * 300.00201 * 15 13 12 33 33 H 1.08002 * 120.01044 * 0.02589 * 20 19 18 34 34 H 1.07998 * 119.70861 * 179.70170 * 21 20 19 35 35 H 1.07998 * 120.17450 * 179.74852 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8276 -0.4190 -5.2204 11 1 3.8073 -1.1188 -4.0079 12 7 2.0184 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8584 1.1582 2.4117 15 6 2.6490 -0.7291 3.5876 16 6 2.6993 0.2391 4.7414 17 7 3.7070 0.9855 5.0741 18 8 3.3740 1.7589 6.2093 19 6 2.1106 1.4755 6.5876 20 6 1.2972 1.9354 7.6162 21 6 0.0190 1.4412 7.7562 22 6 -0.4730 0.4912 6.8687 23 9 -1.7310 0.0213 7.0162 24 6 0.3180 0.0227 5.8423 25 6 1.6184 0.5117 5.6930 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7093 1.1619 -3.4843 30 1 2.2490 -1.6319 1.1524 31 1 3.6481 -1.1216 3.3985 32 1 1.9760 -1.5509 3.8324 33 1 1.6687 2.6766 8.3083 34 1 -0.6078 1.7981 8.5600 35 1 -0.0652 -0.7184 5.1565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416141421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:27 Heat of formation + Delta-G solvation = -22.748658 kcal Electronic energy + Delta-G solvation = -22330.778441 eV Core-core repulsion = 18631.916714 eV Total energy + Delta-G solvation = -3698.861727 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.10365 -41.93903 -39.04597 -37.66117 -35.14282 -34.41174 -32.50032 -31.02904 -30.19250 -29.77803 -28.15981 -25.30622 -23.88932 -22.91951 -22.05108 -20.40965 -19.52661 -18.41930 -17.64634 -17.24307 -16.80202 -16.24330 -15.79651 -15.51193 -15.41738 -15.27329 -14.70481 -14.42593 -14.24986 -13.79618 -13.25602 -13.16524 -13.06289 -12.49429 -12.34176 -12.08659 -11.76433 -11.66417 -11.31647 -11.20622 -11.11185 -10.98977 -10.79657 -10.38778 -10.28249 -9.36583 -9.20158 -9.11694 -8.66890 -8.60759 -8.04639 -6.16729 -4.26780 0.29166 0.81631 1.81665 2.32582 3.11970 3.15626 3.23083 3.28727 3.29567 3.64974 3.83668 4.04786 4.13661 4.24731 4.33884 4.58241 4.81845 4.99978 5.09913 5.15648 5.22274 5.29039 5.48267 5.56462 5.65123 5.68425 5.83591 6.32784 6.75459 6.88288 7.06581 7.07489 7.33460 7.46111 7.62336 7.83909 8.08660 8.51443 8.69426 8.96337 9.40614 10.89207 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.003457 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.558123 B = 8096.716850 C = 8720.944613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.265 3.735 3 H 0.049 0.951 4 C -0.537 4.537 5 H 0.062 0.938 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.703 5.703 13 C 0.506 3.494 14 O -0.544 6.544 15 C -0.083 4.083 16 C 0.165 3.835 17 N -0.268 5.268 18 O -0.089 6.089 19 C 0.076 3.924 20 C -0.096 4.096 21 C -0.096 4.096 22 C 0.069 3.931 23 F -0.134 7.134 24 C -0.069 4.069 25 C -0.155 4.155 26 H 0.091 0.909 27 H 0.027 0.973 28 H 0.014 0.986 29 H 0.266 0.734 30 H 0.391 0.609 31 H 0.121 0.879 32 H 0.121 0.879 33 H 0.149 0.851 34 H 0.152 0.848 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 -3.958 19.325 19.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.163 3.837 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.351 5.351 13 C 0.288 3.712 14 O -0.422 6.422 15 C -0.124 4.124 16 C -0.017 4.017 17 N -0.011 5.011 18 O -0.099 6.099 19 C 0.022 3.978 20 C -0.116 4.116 21 C -0.116 4.116 22 C 0.049 3.951 23 F -0.113 7.113 24 C -0.090 4.090 25 C -0.159 4.159 26 H 0.109 0.891 27 H 0.046 0.954 28 H 0.033 0.967 29 H 0.076 0.924 30 H 0.224 0.776 31 H 0.139 0.861 32 H 0.139 0.861 33 H 0.167 0.833 34 H 0.169 0.831 35 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -0.111 -2.546 18.986 19.156 hybrid contribution -0.562 -1.188 -0.803 1.540 sum -0.673 -3.734 18.183 18.575 Atomic orbital electron populations 1.22080 0.98296 0.99182 1.00995 1.18797 0.91113 0.94046 0.79725 0.93269 1.21161 1.32744 1.13364 0.90243 0.92008 1.24891 0.94742 0.94929 0.99098 1.69890 1.35673 1.22320 1.24107 0.86487 0.79199 0.79558 0.81735 1.20114 1.21104 1.20137 1.46490 1.64773 1.13653 1.10184 1.19869 0.79458 0.87552 0.84286 1.90731 1.50817 1.15774 1.84892 1.20420 1.06029 0.96267 0.89648 1.23814 0.89730 0.94062 0.94135 1.79920 1.18970 1.05315 0.96857 1.89184 1.24872 1.56078 1.39734 1.20268 0.86862 0.94952 0.95749 1.19800 0.92028 1.02402 0.97372 1.21054 0.95457 0.95898 0.99212 1.17258 0.80905 0.98821 0.98094 1.91528 1.36980 1.87367 1.95390 1.20602 0.91511 0.99947 0.96946 1.20366 0.96175 1.01912 0.97402 0.89059 0.95352 0.96669 0.92436 0.77630 0.86136 0.86137 0.83298 0.83058 0.83448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.26 37.16 0.34 -3.21 16 2 C 0.26 6.54 2.56 -69.08 -0.18 6.36 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.54 -13.85 8.73 -34.44 -0.30 -14.15 16 5 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -24.58 11.32 55.43 0.63 -23.95 16 8 Si 0.90 20.29 29.54 -169.99 -5.02 15.26 16 9 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 11 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 12 N -0.70 -13.63 5.07 -54.93 -0.28 -13.91 16 13 C 0.51 9.45 7.79 -10.99 -0.09 9.37 16 14 O -0.54 -12.80 15.70 5.55 0.09 -12.71 16 15 C -0.08 -1.06 6.30 -29.03 -0.18 -1.25 16 16 C 0.16 2.47 5.96 -80.11 -0.48 1.99 16 17 N -0.27 -4.48 12.81 34.91 0.45 -4.03 16 18 O -0.09 -1.39 12.07 7.49 0.09 -1.30 16 19 C 0.08 1.02 7.48 -38.49 -0.29 0.73 16 20 C -0.10 -0.93 10.06 -39.49 -0.40 -1.33 16 21 C -0.10 -0.85 9.99 -39.48 -0.39 -1.24 16 22 C 0.07 0.74 7.29 -39.46 -0.29 0.46 16 23 F -0.13 -1.49 17.26 2.25 0.04 -1.45 16 24 C -0.07 -0.82 10.08 -39.19 -0.39 -1.22 16 25 C -0.15 -2.14 6.32 -105.16 -0.66 -2.81 16 26 H 0.09 2.42 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 30 H 0.39 6.23 8.54 -40.82 -0.35 5.88 16 31 H 0.12 1.28 8.14 -51.93 -0.42 0.85 16 32 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 34 H 0.15 0.86 8.06 -52.49 -0.42 0.43 16 35 H 0.15 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 317.17 15.07 4.78 4.78 Total: -1.00 -32.60 317.17 -6.19 -38.79 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -3.56 Total: 3.13 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: -3.40 Total: -4.61 kcal Atomic # 7 Polarization: -42.68 SS G_CDS: 0.80 Total: -41.89 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.18 Total: -14.01 kcal Atomic # 9 Polarization: -1.49 SS G_CDS: 0.04 Total: -1.45 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.26 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -32.60 -6.19 -38.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416141421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.037 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds