Wall clock time and date at job start Tue Mar 31 2020 06:56:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47536 * 2 1 4 4 C 1.50705 * 109.46997 * 240.00079 * 2 1 3 5 5 H 1.07997 * 120.00508 * 240.00408 * 4 2 1 6 6 C 1.37883 * 119.99633 * 59.99838 * 4 2 1 7 7 N 1.31515 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99703 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46867 * 60.00433 * 8 6 4 10 10 H 1.48500 * 109.46809 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47265 * 300.00197 * 8 6 4 12 12 N 1.46507 * 109.47191 * 120.00606 * 2 1 3 13 13 C 1.34774 * 119.99835 * 274.99418 * 12 2 1 14 14 O 1.21284 * 119.99712 * 0.02562 * 13 12 2 15 15 C 1.50695 * 119.99935 * 179.97438 * 13 12 2 16 16 C 1.50706 * 109.47098 * 180.02562 * 15 13 12 17 17 N 1.29743 * 126.28979 * 270.04373 * 16 15 13 18 18 O 1.41340 * 109.73744 * 179.97438 * 17 16 15 19 19 C 1.34891 * 109.33072 * 359.97438 * 18 17 16 20 20 C 1.38963 * 133.33485 * 179.97438 * 19 18 17 21 21 C 1.37752 * 119.97064 * 180.30865 * 20 19 18 22 22 C 1.39005 * 120.58313 * 359.43878 * 21 20 19 23 23 F 1.35095 * 119.84393 * 180.30849 * 22 21 20 24 24 C 1.37793 * 120.31392 * 0.56139 * 22 21 20 25 25 C 1.39728 * 119.65986 * 359.72226 * 24 22 21 26 26 H 1.09002 * 109.46991 * 59.99594 * 1 2 3 27 27 H 1.08998 * 109.47536 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.46843 * 299.99448 * 1 2 3 29 29 H 0.97000 * 119.99706 * 179.97438 * 7 6 4 30 30 H 0.96998 * 119.99535 * 94.99853 * 12 2 1 31 31 H 1.08998 * 109.47084 * 60.00606 * 15 13 12 32 32 H 1.09001 * 109.47289 * 300.00201 * 15 13 12 33 33 H 1.08002 * 120.01044 * 0.02589 * 20 19 18 34 34 H 1.07998 * 119.70861 * 179.70170 * 21 20 19 35 35 H 1.07998 * 120.17450 * 179.74852 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1316 6 6 1.6991 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3223 -1.1194 -4.0080 9 1 1.8278 -2.5197 -4.0082 10 1 1.8276 -0.4190 -5.2204 11 1 3.8073 -1.1188 -4.0079 12 7 2.0184 -0.6908 1.1961 13 6 2.1472 -0.0185 2.3571 14 8 1.8584 1.1582 2.4117 15 6 2.6490 -0.7291 3.5876 16 6 2.6993 0.2391 4.7414 17 7 3.7070 0.9855 5.0741 18 8 3.3740 1.7589 6.2093 19 6 2.1106 1.4755 6.5876 20 6 1.2972 1.9354 7.6162 21 6 0.0190 1.4412 7.7562 22 6 -0.4730 0.4912 6.8687 23 9 -1.7310 0.0213 7.0162 24 6 0.3180 0.0227 5.8423 25 6 1.6184 0.5117 5.6930 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 0.7093 1.1619 -3.4843 30 1 2.2490 -1.6319 1.1524 31 1 3.6481 -1.1216 3.3985 32 1 1.9760 -1.5509 3.8324 33 1 1.6687 2.6766 8.3083 34 1 -0.6078 1.7981 8.5600 35 1 -0.0652 -0.7184 5.1565 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416141421.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:56:26 Heat of formation + Delta-G solvation = -44.761971 kcal Electronic energy + Delta-G solvation = -22331.733010 eV Core-core repulsion = 18631.916714 eV Total energy + Delta-G solvation = -3699.816296 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 292.101 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.96056 -42.95301 -40.62129 -38.55200 -36.86159 -35.65579 -34.36825 -32.00355 -31.57374 -30.78266 -29.66733 -27.33451 -24.78400 -23.84001 -23.64464 -21.84024 -21.06346 -19.34562 -19.07881 -18.41170 -17.75449 -17.61743 -17.13644 -17.04117 -16.50299 -16.48147 -16.03326 -15.81198 -15.33370 -14.82041 -14.65053 -14.44810 -14.25526 -14.02250 -13.76781 -13.38246 -12.98681 -12.97605 -12.86267 -12.74224 -12.62748 -12.32638 -12.26335 -12.18705 -12.15794 -11.12372 -10.87365 -10.58923 -10.18808 -9.81141 -9.57990 -8.17555 -6.35301 -0.61475 -0.07300 0.78157 1.31929 1.46104 1.48029 1.55668 1.69279 2.22051 2.36831 2.57355 2.80267 2.95701 3.13387 3.22234 3.39948 3.77355 3.88188 4.02124 4.15149 4.21531 4.31627 4.53250 4.75446 4.75826 4.84494 4.87892 4.92067 4.95370 5.09003 5.42446 5.50153 5.58465 5.67667 5.88881 6.03488 6.09217 6.72371 6.87727 7.31525 7.49672 8.88518 Molecular weight = 292.10amu Principal moments of inertia in cm(-1) A = 0.025505 B = 0.003457 C = 0.003210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1097.558123 B = 8096.716850 C = 8720.944613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.270 3.730 3 H -0.005 1.005 4 C -0.547 4.547 5 H 0.078 0.922 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.289 1.289 11 H -0.272 1.272 12 N -0.696 5.696 13 C 0.505 3.495 14 O -0.598 6.598 15 C -0.069 4.069 16 C 0.158 3.842 17 N -0.306 5.306 18 O -0.105 6.105 19 C 0.052 3.948 20 C -0.090 4.090 21 C -0.079 4.079 22 C 0.065 3.935 23 F -0.135 7.135 24 C -0.079 4.079 25 C -0.177 4.177 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.012 0.988 29 H 0.265 0.735 30 H 0.411 0.589 31 H 0.149 0.851 32 H 0.168 0.832 33 H 0.181 0.819 34 H 0.191 0.809 35 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.377 -5.822 20.689 21.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.096 0.904 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.186 1.186 10 H -0.215 1.215 11 H -0.197 1.197 12 N -0.346 5.346 13 C 0.290 3.710 14 O -0.480 6.480 15 C -0.109 4.109 16 C -0.023 4.023 17 N -0.049 5.049 18 O -0.116 6.116 19 C -0.002 4.002 20 C -0.109 4.109 21 C -0.098 4.098 22 C 0.045 3.955 23 F -0.114 7.114 24 C -0.100 4.100 25 C -0.180 4.180 26 H 0.082 0.918 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.074 0.926 30 H 0.248 0.752 31 H 0.167 0.833 32 H 0.185 0.815 33 H 0.199 0.801 34 H 0.208 0.792 35 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -0.423 -4.465 20.379 20.867 hybrid contribution -0.541 -0.548 -1.119 1.358 sum -0.964 -5.013 19.260 19.925 Atomic orbital electron populations 1.21885 0.98053 0.99722 0.99504 1.18358 0.91280 0.91821 0.81878 0.98726 1.21539 1.32666 1.13694 0.90643 0.90408 1.25812 0.94861 0.95555 1.02412 1.70055 1.37033 1.23950 1.24655 0.85394 0.78597 0.78809 0.77524 1.18576 1.21460 1.19666 1.46161 1.64768 1.14489 1.09157 1.20727 0.77947 0.86964 0.85344 1.90712 1.52935 1.18468 1.85855 1.20467 1.08437 0.96124 0.85856 1.24167 0.89883 0.93704 0.94538 1.79830 1.20587 1.06505 0.98006 1.89107 1.26310 1.56390 1.39751 1.20837 0.86475 0.95769 0.97093 1.20269 0.91691 1.02370 0.96559 1.21494 0.95169 0.94093 0.99072 1.17469 0.80722 0.99071 0.98204 1.91531 1.37018 1.87449 1.95369 1.20760 0.90996 1.00503 0.97760 1.20488 0.96824 1.02977 0.97747 0.91752 0.93565 0.96924 0.92606 0.75237 0.83311 0.81489 0.80122 0.79155 0.82336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.53 9.26 71.98 0.67 -5.87 16 2 C 0.27 13.61 2.56 44.25 0.11 13.73 16 3 H -0.01 -0.32 7.58 -2.39 -0.02 -0.33 16 4 C -0.55 -28.11 8.73 25.60 0.22 -27.88 16 5 H 0.08 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.39 11.32 21.45 0.24 -52.15 16 8 Si 0.97 41.24 29.54 68.60 2.03 43.26 16 9 H -0.26 -10.41 7.11 99.48 0.71 -9.71 16 10 H -0.29 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 12 N -0.70 -26.56 5.07 -446.08 -2.26 -28.82 16 13 C 0.50 18.74 7.79 87.66 0.68 19.42 16 14 O -0.60 -29.07 15.70 -3.04 -0.05 -29.12 16 15 C -0.07 -1.65 6.30 29.10 0.18 -1.47 16 16 C 0.16 4.70 5.96 45.04 0.27 4.97 16 17 N -0.31 -10.41 12.81 -43.47 -0.56 -10.96 16 18 O -0.11 -3.35 12.07 29.19 0.35 -3.00 16 19 C 0.05 1.36 7.48 22.97 0.17 1.53 16 20 C -0.09 -1.53 10.06 22.33 0.22 -1.30 16 21 C -0.08 -1.14 9.99 22.34 0.22 -0.91 16 22 C 0.06 1.26 7.29 22.35 0.16 1.42 16 23 F -0.14 -2.69 17.26 44.97 0.78 -1.92 16 24 C -0.08 -1.78 10.08 22.52 0.23 -1.55 16 25 C -0.18 -4.77 6.32 -20.22 -0.13 -4.90 16 26 H 0.06 3.52 6.07 -2.39 -0.01 3.51 16 27 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 28 H 0.01 0.57 8.14 -2.38 -0.02 0.55 16 29 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 30 H 0.41 12.25 8.54 -92.71 -0.79 11.45 16 31 H 0.15 2.76 8.14 -2.39 -0.02 2.74 16 32 H 0.17 2.41 8.14 -2.39 -0.02 2.40 16 33 H 0.18 1.83 8.06 -2.91 -0.02 1.81 16 34 H 0.19 1.24 8.06 -2.91 -0.02 1.21 16 35 H 0.16 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -74.97 317.17 4.35 -70.61 By element: Atomic # 1 Polarization: 13.39 SS G_CDS: 0.36 Total: 13.74 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: 3.47 Total: -1.65 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -2.58 Total: -91.93 kcal Atomic # 8 Polarization: -32.42 SS G_CDS: 0.30 Total: -32.12 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.78 Total: -1.92 kcal Atomic # 14 Polarization: 41.24 SS G_CDS: 2.03 Total: 43.26 kcal Total: -74.97 4.35 -70.61 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416141421.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.849 kcal (2) G-P(sol) polarization free energy of solvation -74.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds